Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016470

Physical Location & Seq

Genomic Coordinates Reverse (-)

53787629 .. 53791091

Gene Structure 3463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG363100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAGAAGCAGCGACTCGTTTTGATGGGAAATCAGTTCAAAAAGTTCTAGCTGCATTGGAAGAAAAGCTGGTGCTTAAAAAGGTTTCCAAGAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGATGATCAAGCTCAGGTGCATGATGACCCTATAGGAACTGGGTTTGTGTCCAATTTCTCAGGGGAGACGGTGGCGAGTAGCAGTGGGAAGAATGAGAGTGGTGGTGGGTTTGATTTGGAGAGGGGTTTTAGAGGTGGAAGTGGGTTCGGCGGTCCAGCCGCGAGGCACAGCCAGCGATGGAAACCTAAATATGTTGATCGATATCAAAATATGGTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

135

Amino Acids

14.72

Weight (kDa)

8.78

Isoelectric Point (pI)

25.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016470)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001218.1_g000051
rosa_roxburghii	Rroxscaffold_2G00088580 Rroxscaffold_2G00091280
rosa_rugosa	Rorug07G0202600.1
rosa_samantha	Rh1AG329100 Rh1DG304000 Rh2AG183900 Rh2AG363100 Rh2BG380700 Rh4AG001700 Rh4AG112000 Rh5AG202700 Rh6AG079400 Rh6BG156600 Rh6BG176400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	347
AciI	CCGC	2 cut(s)	336, 345
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	3 cut(s)	53, 70, 197
AluI	AGCT	3 cut(s)	53, 70, 197
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	11, 53
AspS9I	GGNCC	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	23, 40
BccI	CCATC	2 cut(s)	20, 357
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	50, 406
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	12, 54, 345
BlsI	GCNGC	3 cut(s)	13, 55, 346
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	234
Bpu10I	CCTNAGC	2 cut(s)	159, 198
Bsa29I	ATCGAT	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	186, 229
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	150, 212, 258
BseNI	ACTGG	2 cut(s)	186, 229
BseXI	GCAGC	2 cut(s)	23, 40
Bsh1236I	CGCG	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	245
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	190, 382
BspACI	CCGC	2 cut(s)	336, 345
BspCNI	CTCAG	3 cut(s)	151, 211, 257
BspDI	ATCGAT	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	186, 229
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	190, 382
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	159, 198, 244
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	193, 385
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	190, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	2 cut(s)	23, 40
Bsu15I	ATCGAT	1 cut(s)	385
BsuTUI	ATCGAT	1 cut(s)	385
BtgZI	GCGATG	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	338
ClaI	ATCGAT	1 cut(s)	385
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	6 cut(s)	53, 70, 158, 197, 344, 357
CviKI_1	RGCY	6 cut(s)	53, 70, 158, 197, 344, 357
DdeI	CTNAG	3 cut(s)	159, 198, 244
DpnI	GATC	2 cut(s)	192, 384
DpnII	GATC	2 cut(s)	190, 382
Eco32I	GATATC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	389
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	1 cut(s)	209
FaiI	YATR	5 cut(s)	138, 207, 218, 378, 398
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	12, 54, 345
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	12, 54, 345
FspBI	CTAG	2 cut(s)	50, 406
GluI	GCNGC	3 cut(s)	12, 54, 345
Hin1II	CATG	1 cut(s)	209
HinfI	GANTC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	91, 97
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	56, 176, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	3 cut(s)	159, 198, 244
Hsp92II	CATG	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	190, 382
LpnPI	CCDG	9 cut(s)	56, 131, 158, 167, 185, 210, 231, 354, 371
Lsp1109I	GCAGC	2 cut(s)	23, 40
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	50, 406
MalI	GATC	2 cut(s)	192, 384
MboI	GATC	2 cut(s)	190, 382
MboII	GAAGA	5 cut(s)	17, 74, 106, 197, 286
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	4 cut(s)	154, 300, 311, 342
MseI	TTAA	2 cut(s)	78, 126
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	2 cut(s)	190, 382
NlaIII	CATG	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	13, 55, 346
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	78, 126
SatI	GCNGC	3 cut(s)	12, 54, 345
Sau3AI	GATC	2 cut(s)	190, 382
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	8 cut(s)	55, 72, 87, 165, 199, 204, 322, 373
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	338
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	2 cut(s)	336, 345
SspMI	CTAG	2 cut(s)	50, 406
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	385
TasI	AATT	1 cut(s)	238
TauI	GCSGC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	78, 126
Tru9I	TTAA	2 cut(s)	78, 126
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	2 cut(s)	11, 53
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	338
XspI	CTAG	2 cut(s)	50, 406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.