Rmu_sc0001351.1_g000010
ERF Family

Radical SAM superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001351.1
Physical Location & Seq
Forward (+)
32102 .. 35610
3509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001351.1_g000010.1.cds

Sequence Viewer

Length: 1494 bp
atggaagggttgcttccccttctataccatgccatcaagaagcgaagatcaaaacacaagcacagatgcttttcggagagcaattcaaaaagtagctaccgtctcctcggttgtggccatgacctaaccttggaaggcttgtctcattgtcaaaaaggatccgagttccaacctctggtcactgctgaattattagagcagcgatctgcacttgactttaatcattcgtgtagctacgaggaagaagatggtgtctctgcgggggttccttttgtgccaagttcctcaaaagataggatttcacagcgaagtcataactcatccgcctccgtcaccgcaacccccaaaacgcccaaaatcatgcaaagtgctcgcaaaacgacgccgttccggtcaattttcgacgccggagctctgaaatcagagctggaaaactccgggatcaagcccagcttcatgccctacatatggaagcaggtgatccaaaacccctccgcccaactcgaccaaatcccctccttgccctccgccgcataccctcttctaaactccaaattcaaaaccctaacctcctccgtccactccgccaccgactcctccgaccacctcaccaccaagctcctcatcaagctccagaacggcgctctggtggaggccgtgatcatgaggtacgatagcagcttggggaagcacaatggcaagtcccaccacggcggcgcaaggtccaccttgtgcgtatcgtctcaggttggttgtaaaatgggttgcacgttctgtgccaccgggagtatggggtttaagagcaatttgacctctggggagattgtggagcagttggttcatgcttctcgcatttcgcctatacgcaatgttgttttcatgggaatgggggaaccgttgaataactataatgccttagtggaagcaattcatgtcatgactggattaccatttcagctgtcgccaaagagaatcacagtgtcaacggttggtattattcatgctatcaacaagttccataatgatctccctggactgaatttagcagtttcactgcatgcacctgtccaagaaattcgttgtcagataatgcctgcagctcgggcctttcccttagtaaaacttatggattcactgcaacaatatcaaaagaacagtcagcagaaaattttcattgaatacataatgcttgacggagtgaacgatgaagaagaacatgcgcaccagcttgggaaattgctagatacatttcaagtggtaattaatttaataccttttaacccaattggtagtctgagcaaattcaaaaccactgccgaagaaaaagtatctgtttttcagaagattctaagaggtacgtatggcatccgaacaaccgttcgcaaggaaatgggtcaggacataagtggagcgtgtggtcagttggtggtgaacatacccaataagaggtcaagtgaccctctaactgatatagaagatcttcaggtcagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

497

Amino Acids

54.68

Weight (kDa)

9.08

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 466
Acc16I TGCGCA 1 cut(s) 1221
Acc36I ACCTGC 1 cut(s) 466
AccB7I CCANNNNNTGG 1 cut(s) 175
AciI CCGC 8 cut(s) 260, 324, 336, 495, 528, 531, 585, 714
AclWI GGATC 4 cut(s) 153, 166, 449, 475
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 5 cut(s) 554, 1039, 1074, 1167, 1301
AcuI CTGAAG 1 cut(s) 1466
AcyI GRCGYC 2 cut(s) 383, 405
AdeI CACNNNGTG 1 cut(s) 732
AfaI GTAC 2 cut(s) 671, 1357
AfiI CCNNNNNNNGG 4 cut(s) 130, 175, 468, 1446
AgsI TTSAA 6 cut(s) 87, 559, 901, 1178, 1253, 1306
AjnI CCWGG 1 cut(s) 1030
Alw21I GWGCWC 2 cut(s) 373, 415
Alw26I GTCTC 4 cut(s) 107, 147, 259, 747
AlwI GGATC 4 cut(s) 153, 166, 449, 475
Ama87I CYCGRG 1 cut(s) 1101
AoxI GGCC 3 cut(s) 115, 654, 1104
ApeKI GCWGC 3 cut(s) 199, 678, 1097
ApoI RAATTY 5 cut(s) 554, 1039, 1074, 1167, 1301
ArsI GACNNNNNNTTYG 2 cut(s) 1141, 1173
AseI ATTAAT 1 cut(s) 1263
Asp700I GAANNNNTTC 3 cut(s) 927, 1169, 1479
AspLEI GCGC 3 cut(s) 644, 719, 1222
AspS9I GGNCC 2 cut(s) 723, 1104
AsuC2I CCSGG 2 cut(s) 439, 784
AsuHPI GGTGA 4 cut(s) 325, 490, 601, 1441
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 1 cut(s) 723
BalI TGGCCA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 415
Bbv12I GWGCWC 2 cut(s) 373, 415
BbvI GCAGC 3 cut(s) 211, 690, 1109
BccI CCATC 2 cut(s) 41, 242
BceAI ACGGC 4 cut(s) 370, 641, 655, 727
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 1 cut(s) 1032
BclI TGATCA 1 cut(s) 660
BcnI CCSGG 2 cut(s) 439, 784
BcoDI GTCTC 4 cut(s) 107, 147, 259, 747
BfaI CTAG 1 cut(s) 1241
BfmI CTRYAG 1 cut(s) 1095
BfoI RGCGCY 1 cut(s) 645
BfuAI ACCTGC 1 cut(s) 466
BglII AGATCT 1 cut(s) 1477
BisI GCNGC 5 cut(s) 200, 531, 679, 715, 1098
BlsI GCNGC 5 cut(s) 201, 532, 680, 716, 1099
Bme1390I CCNGG 3 cut(s) 439, 784, 1032
Bme18I GGWCC 1 cut(s) 723
BmeT110I CYCGRG 1 cut(s) 1101
BmgT120I GGNCC 2 cut(s) 723, 1104
BmiI GGNNCC 3 cut(s) 160, 267, 894
BmrFI CCNGG 3 cut(s) 439, 784, 1032
BmsI GCATC 2 cut(s) 56, 1374
BpmI CTGGAG 1 cut(s) 617
BpuMI CCSGG 2 cut(s) 439, 784
BsaAI YACGTR 1 cut(s) 1359
BsaHI GRCGYC 2 cut(s) 383, 405
BsaJI CCNNGG 4 cut(s) 106, 129, 709, 1030
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 175, 468, 1446
Bse1I ACTGG 1 cut(s) 946
Bse3DI GCAATG 1 cut(s) 874
BseBI CCWGG 1 cut(s) 1032
BseDI CCNNGG 4 cut(s) 106, 129, 709, 1030
BseGI GGATG 2 cut(s) 320, 1365
BseLI CCNNNNNNNGG 4 cut(s) 130, 175, 468, 1446
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 2 cut(s) 758, 1286
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 4 cut(s) 95, 562, 586, 611
BseXI GCAGC 3 cut(s) 211, 690, 1109
BseYI CCCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 3 cut(s) 117, 656, 1106
BsiHKAI GWGCWC 2 cut(s) 373, 415
BsiHKCI CYCGRG 1 cut(s) 1101
BsiSI CCGG 4 cut(s) 391, 408, 438, 783
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 4 cut(s) 130, 175, 468, 1446
BsmAI GTCTC 4 cut(s) 107, 147, 259, 747
BsmBI CGTCTC 2 cut(s) 107, 747
BsmFI GGGAC 1 cut(s) 688
BsnI GGCC 3 cut(s) 117, 656, 1106
BsoBI CYCGRG 1 cut(s) 1101
Bsp1286I GDGCHC 2 cut(s) 373, 415
Bsp143I GATC 8 cut(s) 47, 158, 203, 441, 480, 660, 1024, 1477
BspACI CCGC 8 cut(s) 260, 324, 336, 495, 528, 531, 585, 714
BspANI GGCC 3 cut(s) 117, 656, 1106
BspCNI CTCAG 2 cut(s) 757, 1287
BspHI TCATGA 2 cut(s) 663, 936
BspLI GGNNCC 3 cut(s) 160, 267, 894
BspMAI CTGCAG 1 cut(s) 1099
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 4 cut(s) 153, 166, 449, 475
BsrDI GCAATG 1 cut(s) 874
BsrI ACTGG 1 cut(s) 946
BssECI CCNNGG 4 cut(s) 106, 129, 709, 1030
BssMI GATC 8 cut(s) 47, 158, 203, 441, 480, 660, 1024, 1477
BssNI GRCGYC 2 cut(s) 383, 405
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 1032
Bst4CI ACNGT 6 cut(s) 101, 897, 979, 988, 1157, 1378
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 2 cut(s) 383, 405
BstBAI YACGTR 1 cut(s) 1359
BstC8I GCNNGC 3 cut(s) 373, 1059, 1095
BstDEI CTNAG 5 cut(s) 744, 916, 1114, 1295, 1349
BstDSI CCRYGG 1 cut(s) 709
BstF5I GGATG 2 cut(s) 320, 1365
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 3 cut(s) 644, 719, 1222
BstKTI GATC 8 cut(s) 50, 161, 206, 444, 483, 663, 1027, 1480
BstMAI GTCTC 4 cut(s) 107, 147, 259, 747
BstMBI GATC 8 cut(s) 47, 158, 203, 441, 480, 660, 1024, 1477
BstMWI GCNNNNNNNGC 1 cut(s) 1103
BstNI CCWGG 1 cut(s) 1032
BstNSI RCATGY 2 cut(s) 1061, 1220
BstSCI CCNGG 3 cut(s) 437, 782, 1030
BstSFI CTRYAG 1 cut(s) 1095
BstSNI TACGTA 1 cut(s) 1359
BstV1I GCAGC 3 cut(s) 211, 690, 1109
BstX2I RGATCY 2 cut(s) 158, 1477
BstYI RGATCY 2 cut(s) 158, 1477
BsuRI GGCC 3 cut(s) 117, 656, 1106
BtgI CCRYGG 1 cut(s) 709
BtsCI GGATG 2 cut(s) 320, 1365
BtsI GCAGTG 4 cut(s) 180, 1052, 1133, 1311
BtsIMutI CAGTG 5 cut(s) 180, 984, 1052, 1133, 1311
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 3 cut(s) 373, 1059, 1095
CciI TCATGA 2 cut(s) 663, 936
CfoI GCGC 3 cut(s) 644, 719, 1222
Cfr13I GGNCC 2 cut(s) 723, 1104
CseI GACGC 2 cut(s) 391, 413
Csp6I GTAC 2 cut(s) 670, 1356
CviQI GTAC 2 cut(s) 670, 1356
DdeI CTNAG 5 cut(s) 744, 916, 1114, 1295, 1349
DpnI GATC 8 cut(s) 49, 160, 205, 443, 482, 662, 1026, 1479
DpnII GATC 8 cut(s) 47, 158, 203, 441, 480, 660, 1024, 1477
DraIII CACNNNGTG 1 cut(s) 732
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 4 cut(s) 313, 484, 517, 574
Ecl136II GAGCTC 1 cut(s) 413
Eco105I TACGTA 1 cut(s) 1359
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 723
Eco53kI GAGCTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 1466
Eco88I CYCGRG 1 cut(s) 1101
EcoICRI GAGCTC 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 1030
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 129
Esp3I CGTCTC 2 cut(s) 107, 747
FalI AAGNNNNNCTT 3 cut(s) 29, 437, 469
FaqI GGGAC 1 cut(s) 688
FauI CCCGC 1 cut(s) 253
FauNDI CATATG 1 cut(s) 467
FbaI TGATCA 1 cut(s) 660
Fnu4HI GCNGC 5 cut(s) 200, 531, 679, 715, 1098
FokI GGATG 2 cut(s) 307, 1352
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 5 cut(s) 200, 531, 679, 715, 1098
FspAI RTGCGCAY 1 cut(s) 1221
FspBI CTAG 1 cut(s) 1241
FspI TGCGCA 1 cut(s) 1221
GlaI GCGC 3 cut(s) 643, 718, 1221
GluI GCNGC 5 cut(s) 200, 531, 679, 715, 1098
GsaI CCCAGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 617
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 3 cut(s) 117, 656, 1106
HapII CCGG 4 cut(s) 391, 408, 438, 783
HgaI GACGC 2 cut(s) 391, 413
HhaI GCGC 3 cut(s) 644, 719, 1222
Hin1I GRCGYC 2 cut(s) 383, 405
Hin6I GCGC 3 cut(s) 642, 717, 1220
HinP1I GCGC 3 cut(s) 642, 717, 1220
HincII GTYRAC 1 cut(s) 984
HindII GTYRAC 1 cut(s) 984
HinfI GANTC 4 cut(s) 593, 972, 1130, 1345
HpaII CCGG 4 cut(s) 391, 408, 438, 783
HphI GGTGA 4 cut(s) 325, 490, 601, 1441
Hpy166II GTNNAC 5 cut(s) 580, 726, 984, 1201, 1432
Hpy188III TCNNGA 5 cut(s) 37, 634, 664, 937, 1397
Hpy8I GTNNAC 5 cut(s) 580, 726, 984, 1201, 1432
Hpy99I CGWCG 2 cut(s) 385, 407
HpyAV CCTTC 2 cut(s) 29, 128
HpyCH4III ACNGT 6 cut(s) 101, 897, 979, 988, 1157, 1378
HpyCH4IV ACGT 2 cut(s) 770, 1358
HpyCH4V TGCA 7 cut(s) 209, 364, 768, 1057, 1061, 1097, 1138
HpyF10VI GCNNNNNNNGC 1 cut(s) 1103
HpyF3I CTNAG 5 cut(s) 744, 916, 1114, 1295, 1349
HpySE526I ACGT 2 cut(s) 770, 1358
Hsp92I GRCGYC 2 cut(s) 383, 405
HspAI GCGC 3 cut(s) 642, 717, 1220
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 8 cut(s) 47, 158, 203, 441, 480, 660, 1024, 1477
LmnI GCTCC 5 cut(s) 410, 624, 636, 829, 1409
Lsp1109I GCAGC 3 cut(s) 211, 690, 1109
LweI GCATC 2 cut(s) 56, 1374
MaeI CTAG 1 cut(s) 1241
MaeII ACGT 2 cut(s) 770, 1358
MaeIII GTNAC 3 cut(s) 178, 331, 1454
MalI GATC 8 cut(s) 49, 160, 205, 443, 482, 662, 1026, 1479
MboI GATC 8 cut(s) 47, 158, 203, 441, 480, 660, 1024, 1477
MfeI CAATTG 1 cut(s) 1284
MflI RGATCY 2 cut(s) 158, 1477
MhlI GDGCHC 2 cut(s) 373, 415
MlsI TGGCCA 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 2 cut(s) 193, 624
Mox20I TGGCCA 1 cut(s) 117
MroXI GAANNNNTTC 3 cut(s) 927, 1169, 1479
MscI TGGCCA 1 cut(s) 117
MseI TTAA 5 cut(s) 219, 798, 1263, 1268, 1278
MslI CAYNNNNRTG 1 cut(s) 884
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 958
MspI CCGG 4 cut(s) 391, 408, 438, 783
MspR9I CCNGG 3 cut(s) 439, 784, 1032
MunI CAATTG 1 cut(s) 1284
MvaI CCWGG 1 cut(s) 1032
MwoI GCNNNNNNNGC 1 cut(s) 1103
NciI CCSGG 2 cut(s) 439, 784
NdeI CATATG 1 cut(s) 467
NdeII GATC 8 cut(s) 47, 158, 203, 441, 480, 660, 1024, 1477
NlaIV GGNNCC 3 cut(s) 160, 267, 894
NmuCI GTSAC 3 cut(s) 178, 331, 1454
NsbI TGCGCA 1 cut(s) 1221
NspI RCATGY 2 cut(s) 1061, 1220
PaeI GCATGC 1 cut(s) 1061
PagI TCATGA 2 cut(s) 663, 936
PaqCI CACCTGC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 1200
PdmI GAANNNNTTC 3 cut(s) 927, 1169, 1479
PfeI GAWTC 3 cut(s) 972, 1130, 1345
PflMI CCANNNNNTGG 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 5 cut(s) 201, 532, 680, 716, 1099
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
Ppu21I YACGTR 1 cut(s) 1359
PshBI ATTAAT 1 cut(s) 1263
Psp124BI GAGCTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 1030
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 1030
PspN4I GGNNCC 3 cut(s) 160, 267, 894
PspPI GGNCC 2 cut(s) 723, 1104
PstI CTGCAG 1 cut(s) 1099
PsuI RGATCY 2 cut(s) 158, 1477
PvuII CAGCTG 1 cut(s) 958
RsaI GTAC 2 cut(s) 671, 1357
RsaNI GTAC 2 cut(s) 670, 1356
RseI CAYNNNNRTG 1 cut(s) 884
SacI GAGCTC 1 cut(s) 415
SaqAI TTAA 5 cut(s) 219, 798, 1263, 1268, 1278
SatI GCNGC 5 cut(s) 200, 531, 679, 715, 1098
Sau3AI GATC 8 cut(s) 47, 158, 203, 441, 480, 660, 1024, 1477
Sau96I GGNCC 2 cut(s) 723, 1104
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 3 cut(s) 439, 784, 1032
SduI GDGCHC 2 cut(s) 373, 415
SfaNI GCATC 2 cut(s) 56, 1374
SfcI CTRYAG 1 cut(s) 1095
SinI GGWCC 1 cut(s) 723
SmiMI CAYNNNNRTG 1 cut(s) 884
SnaBI TACGTA 1 cut(s) 1359
SphI GCATGC 1 cut(s) 1061
SsiI CCGC 8 cut(s) 260, 324, 336, 495, 528, 531, 585, 714
SspMI CTAG 1 cut(s) 1241
SstI GAGCTC 1 cut(s) 415
StyD4I CCNGG 3 cut(s) 437, 782, 1030
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 6 cut(s) 101, 897, 979, 988, 1157, 1378
TaiI ACGT 2 cut(s) 773, 1361
TaqI TCGA 2 cut(s) 402, 504
TauI GCSGC 2 cut(s) 533, 717
TfiI GAWTC 3 cut(s) 972, 1130, 1345
Tru1I TTAA 5 cut(s) 219, 798, 1263, 1268, 1278
Tru9I TTAA 5 cut(s) 219, 798, 1263, 1268, 1278
TscAI CASTG 5 cut(s) 187, 984, 1059, 1140, 1318
TseFI GTSAC 3 cut(s) 178, 331, 1454
TseI GCWGC 3 cut(s) 199, 678, 1097
Tsp45I GTSAC 3 cut(s) 178, 331, 1454
TspDTI ATGAA 7 cut(s) 445, 830, 868, 920, 989, 1162, 1221
TspGWI ACGGA 3 cut(s) 319, 565, 1209
TspRI CASTG 5 cut(s) 187, 984, 1059, 1140, 1318
Van91I CCANNNNNTGG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 723
VspI ATTAAT 1 cut(s) 1263
XapI RAATTY 5 cut(s) 554, 1039, 1074, 1167, 1301
XceI RCATGY 2 cut(s) 1061, 1220
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XmnI GAANNNNTTC 3 cut(s) 927, 1169, 1479
XspI CTAG 1 cut(s) 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.