Radical SAM superfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G19630 |
| fragaria_vesca | FvH4_2g04300 FvH4_2g04300 |
| malus_domestica | MD05G1099600.v1.1 MD10G1105300.v1.1 |
| prunus_persica | Prupe.8G144200_v2.0.a1 Prupe.8G144200_v2.0.a1 Prupe.8G144200_v2.0.a1 Prupe.8G144200_v2.0.a1 Prupe.8G144200_v2.0.a1 Prupe.8G144200_v2.0.a1 |
| pyrus_communis | pycom05g09850 pycom10g09070 |
| rosa_chinensis | RchiOBHm_Chr6g0253741 |
| rosa_laevigata | RLG00000014990 |
| rosa_multiflora | Rmu_sc0001351.1_g000010 Rmu_sc0006378.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00211690 |
| rosa_rugosa | Rorug05G0546000 |
| rosa_samantha | Rh6AG061500 Rh6BG055100 Rh6CG055100 Rh6DG052600 |
| rosa_wichuraiana | Rw6G005470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 83 |
| AccI | GTMKAC | 2 cut(s) | 45, 357 |
| AciI | CCGC | 1 cut(s) | 135 |
| AcoI | YGGCCR | 1 cut(s) | 225 |
| AcsI | RAATTY | 2 cut(s) | 7, 37 |
| AgsI | TTSAA | 4 cut(s) | 127, 275, 314, 332 |
| AluBI | AGCT | 3 cut(s) | 99, 252, 324 |
| AluI | AGCT | 3 cut(s) | 99, 252, 324 |
| Alw26I | GTCTC | 1 cut(s) | 950 |
| AoxI | GGCC | 3 cut(s) | 54, 120, 225 |
| ApoI | RAATTY | 2 cut(s) | 7, 37 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 211 |
| BalI | TGGCCA | 1 cut(s) | 227 |
| BfmI | CTRYAG | 1 cut(s) | 165 |
| BisI | GCNGC | 1 cut(s) | 135 |
| BlsI | GCNGC | 1 cut(s) | 136 |
| Bse118I | RCCGGY | 1 cut(s) | 137 |
| Bse1I | ACTGG | 1 cut(s) | 365 |
| Bse3DI | GCAATG | 1 cut(s) | 163 |
| BseMI | GCAATG | 1 cut(s) | 163 |
| BseMII | CTCAG | 3 cut(s) | 93, 108, 262 |
| BseNI | ACTGG | 1 cut(s) | 365 |
| BshFI | GGCC | 3 cut(s) | 56, 122, 227 |
| BsiSI | CCGG | 1 cut(s) | 138 |
| BsnI | GGCC | 3 cut(s) | 56, 122, 227 |
| Bsp143I | GATC | 1 cut(s) | 195 |
| BspACI | CCGC | 1 cut(s) | 135 |
| BspANI | GGCC | 3 cut(s) | 56, 122, 227 |
| BspCNI | CTCAG | 3 cut(s) | 94, 109, 261 |
| BsrDI | GCAATG | 1 cut(s) | 163 |
| BsrFI | RCCGGY | 1 cut(s) | 137 |
| BsrI | ACTGG | 1 cut(s) | 365 |
| BssAI | RCCGGY | 1 cut(s) | 137 |
| BssMI | GATC | 1 cut(s) | 195 |
| BssNAI | GTATAC | 1 cut(s) | 46 |
| Bst1107I | GTATAC | 1 cut(s) | 46 |
| Bst4CI | ACNGT | 3 cut(s) | 64, 319, 347 |
| Bst6I | CTCTTC | 1 cut(s) | 55 |
| BstC8I | GCNNGC | 1 cut(s) | 139 |
| BstDEI | CTNAG | 3 cut(s) | 102, 117, 248 |
| BstKTI | GATC | 1 cut(s) | 198 |
| BstMBI | GATC | 1 cut(s) | 195 |
| BstSFI | CTRYAG | 1 cut(s) | 165 |
| BstZ17I | GTATAC | 1 cut(s) | 46 |
| BsuRI | GGCC | 3 cut(s) | 56, 122, 227 |
| BtsIMutI | CAGTG | 1 cut(s) | 343 |
| Cac8I | GCNNGC | 1 cut(s) | 139 |
| Cfr10I | RCCGGY | 1 cut(s) | 137 |
| CviJI | RGCY | 9 cut(s) | 56, 99, 122, 141, 227, 252, 289, 304, 324 |
| CviKI_1 | RGCY | 9 cut(s) | 56, 99, 122, 141, 227, 252, 289, 304, 324 |
| DdeI | CTNAG | 3 cut(s) | 102, 117, 248 |
| DpnI | GATC | 1 cut(s) | 197 |
| DpnII | GATC | 1 cut(s) | 195 |
| DraI | TTTAAA | 1 cut(s) | 145 |
| EaeI | YGGCCR | 1 cut(s) | 225 |
| Eam1104I | CTCTTC | 1 cut(s) | 55 |
| EarI | CTCTTC | 1 cut(s) | 55 |
| Eco147I | AGGCCT | 1 cut(s) | 122 |
| FaiI | YATR | 5 cut(s) | 13, 46, 83, 167, 327 |
| FblI | GTMKAC | 2 cut(s) | 45, 357 |
| Fnu4HI | GCNGC | 1 cut(s) | 135 |
| Fsp4HI | GCNGC | 1 cut(s) | 135 |
| GluI | GCNGC | 1 cut(s) | 135 |
| HaeIII | GGCC | 3 cut(s) | 56, 122, 227 |
| HapII | CCGG | 1 cut(s) | 138 |
| HinfI | GANTC | 2 cut(s) | 201, 212 |
| HpaII | CCGG | 1 cut(s) | 138 |
| Hpy166II | GTNNAC | 2 cut(s) | 46, 358 |
| Hpy188I | TCNGA | 4 cut(s) | 28, 103, 200, 206 |
| Hpy188III | TCNNGA | 1 cut(s) | 127 |
| Hpy8I | GTNNAC | 2 cut(s) | 46, 358 |
| HpyAV | CCTTC | 1 cut(s) | 133 |
| HpyCH4III | ACNGT | 3 cut(s) | 64, 319, 347 |
| HpyCH4V | TGCA | 2 cut(s) | 91, 343 |
| HpyF3I | CTNAG | 3 cut(s) | 102, 117, 248 |
| KroI | GCCGGC | 1 cut(s) | 137 |
| KroNI | GCCGGC | 1 cut(s) | 139 |
| Kzo9I | GATC | 1 cut(s) | 195 |
| LpnPI | CCDG | 2 cut(s) | 151, 346 |
| MalI | GATC | 1 cut(s) | 197 |
| MboI | GATC | 1 cut(s) | 195 |
| MboII | GAAGA | 5 cut(s) | 42, 253, 287, 295, 305 |
| MlsI | TGGCCA | 1 cut(s) | 227 |
| MluCI | AATT | 4 cut(s) | 7, 37, 92, 207 |
| MluNI | TGGCCA | 1 cut(s) | 227 |
| MlyI | GAGTC | 1 cut(s) | 210 |
| MmeI | TCCRAC | 1 cut(s) | 184 |
| MnlI | CCTC | 3 cut(s) | 67, 112, 231 |
| Mox20I | TGGCCA | 1 cut(s) | 227 |
| MroNI | GCCGGC | 1 cut(s) | 137 |
| MroXI | GAANNNNTTC | 1 cut(s) | 211 |
| MscI | TGGCCA | 1 cut(s) | 227 |
| MseI | TTAA | 1 cut(s) | 144 |
| MslI | CAYNNNNRTG | 1 cut(s) | 348 |
| Msp20I | TGGCCA | 1 cut(s) | 227 |
| MspI | CCGG | 1 cut(s) | 138 |
| NaeI | GCCGGC | 1 cut(s) | 139 |
| NdeII | GATC | 1 cut(s) | 195 |
| NgoMIV | GCCGGC | 1 cut(s) | 137 |
| PceI | AGGCCT | 1 cut(s) | 122 |
| PdiI | GCCGGC | 1 cut(s) | 139 |
| PdmI | GAANNNNTTC | 1 cut(s) | 211 |
| PfeI | GAWTC | 1 cut(s) | 212 |
| PkrI | GCNGC | 1 cut(s) | 136 |
| PleI | GAGTC | 1 cut(s) | 209 |
| PpsI | GAGTC | 1 cut(s) | 209 |
| PsiI | TTATAA | 1 cut(s) | 83 |
| RseI | CAYNNNNRTG | 1 cut(s) | 348 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SatI | GCNGC | 1 cut(s) | 135 |
| Sau3AI | GATC | 1 cut(s) | 195 |
| SchI | GAGTC | 1 cut(s) | 210 |
| SetI | ASST | 5 cut(s) | 90, 101, 151, 254, 326 |
| SfcI | CTRYAG | 1 cut(s) | 165 |
| SgeI | CNNG | 7 cut(s) | 76, 139, 150, 197, 235, 302, 320 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 348 |
| Sse9I | AATT | 4 cut(s) | 7, 37, 92, 207 |
| SseBI | AGGCCT | 1 cut(s) | 122 |
| SsiI | CCGC | 1 cut(s) | 135 |
| StuI | AGGCCT | 1 cut(s) | 122 |
| TaaI | ACNGT | 3 cut(s) | 64, 319, 347 |
| TasI | AATT | 4 cut(s) | 7, 37, 92, 207 |
| TauI | GCSGC | 1 cut(s) | 137 |
| TfiI | GAWTC | 1 cut(s) | 212 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| TscAI | CASTG | 1 cut(s) | 350 |
| TspGWI | ACGGA | 1 cut(s) | 327 |
| TspRI | CASTG | 1 cut(s) | 350 |
| XapI | RAATTY | 2 cut(s) | 7, 37 |
| XmiI | GTMKAC | 2 cut(s) | 45, 357 |
| XmnI | GAANNNNTTC | 1 cut(s) | 211 |