Rmu_sc0006378.1_g000003
ERF Family

Radical SAM superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006378.1
Physical Location & Seq
Reverse (-)
6651 .. 12231
5581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006378.1_g000003.1.cds

Sequence Viewer

Length: 2313 bp
atggaagggttgcttccccttctataccatgccatcaagaagcgaagatcaaaacacaagcacagatgcttttcggagagcaattcaaaaagtagctaccgtctcctcggttgtggccatgacctaaccttggaaggcttgtctcattgtcaaaaaggatccgagttccaacctctggtcactgctgaattattagagcagcgatctgcacttgactttaatcattcgtgtagctacgaggaagaagatggtgtctctgcgggggttccttttgtgccaagttcctcaaaagataggatttcacagcgaagtcataactcatccgcctccgtcaccgcaacccccaaaacgcccaaaatcatgcaaagtgctcgcaaaacgacgccgttccggtcaattttcgacgccggagctctgaaatcagagctggagaactccgggatcaagcccagcttcatgccctacatatggaagcaggtgatccaaaacccctccgcccaactcgaccaaatcccctccttgccctccgccgcataccctcttctcaactccaaattcaaaaccctaacctcctccgtccactccgccaccgactcctccgaccacctcaccaccaagctcctcatcaagctccaggtttgttttccgcacaccacctgttcgatgaaatgtctgaatgacatatggaagcaggtgatccaaaacccctccgcccaactcgaccaaatcccctccttgccctccgccgcataccctcttctaaactccaaattcaaaaccctaacctcctccgtccactccgccaccgactcctccgaccacctcaccaccaagctcctcatcaagctccagaacggcgctctggtggaggccgtgatcatgaggtacgatagcagcttggggaagcacaatggcaagtcccaccacggcggcgcaaggtccaccttgtgcgtatcgtctcaggttggttgtaaaatgggttgcacgttctgtgccactgggagtatggggtttaagagcaatttgacctctggggagattgtggagcagttggttcatgcttctcgcatttcgcctatacgcaatgttgttttcatgggaatgggggaaccgttgaataactataatgccttagtggaagcaattcatgtcatgactggattaccatttcagctgtcgccaaagagaatcacagtgtcaacggttggtattattcatgctatcaacaagttccataatgatctccctggactgaatttagcagtttcactgcatgcacctgtccaagaaattcgttgtcagataatgcctgcagctcgggcctttcccttagtaaaacttatggattcactgcaacaatatcaaaagaacagtcagcagaaaattttcattgaatacataatgcttgacggagtgaacgatgaagaagaacatgcgcaccagcttgggaaattgctagatacatttcaagtggtaattaatttaataccttttaacccaattggtagtctgagcaaattcaaaaccactgccgaagaaaaagtatctgtttttcagaagattctaagaggtacgtatggcatccgaacaaccgttcgcaaggaaatgggtcaggacataagtggagcgtgtggtcagttggtggtgaacatacccaataagaggtcaagtgaccctctaactgatatagaagatcttcagggaatgggggaaccgttgaataactataatgccttagtggaagcaattcatgtcatgactggattaccatttcagctgtcgccaaagagaatcacagtgtcaacggttggtattattcatgctatcaacaagttccataatgatctccctggactgaatttagcagtttcactgcatgcacctgtccaagaaattcgttgtcagataatgcctgcagctcgggcctttcccttagtaaaacttatggattcactgcaacaatatcaaaagaacagtcagcagaaaattttcattgaatacataatgcttgacggagtgaacgatgaagaagaacatgcgcaccagcttgggaaattgctagatacatttcaagtggtaattaatttaataccttttaacccaattggtagtctgagcaaattcaaaaccactgccgaagaaaaagtatctgtttttcagaagattctaagaggtacgtatggcatccgaacaaccgttcgcaaggaaatgggtcaggacataagtggagcgtgtggtcagttggtggtgaacatacccaataagaggtcaagtgaccctctaactgatatagaagatcttcaggtcagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

770

Amino Acids

84.98

Weight (kDa)

8.87

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 466, 682
Acc16I TGCGCA 2 cut(s) 1437, 2040
Acc36I ACCTGC 2 cut(s) 466, 682
AccB7I CCANNNNNTGG 1 cut(s) 175
AclWI GGATC 5 cut(s) 153, 166, 449, 475, 691
AcoI YGGCCR 1 cut(s) 115
AcuI CTGAAG 2 cut(s) 1682, 2285
AcyI GRCGYC 2 cut(s) 383, 405
AdeI CACNNNGTG 1 cut(s) 948
AfaI GTAC 3 cut(s) 887, 1573, 2176
AfiI CCNNNNNNNGG 5 cut(s) 130, 175, 468, 1662, 2265
AjnI CCWGG 3 cut(s) 633, 1246, 1849
Alw21I GWGCWC 2 cut(s) 373, 415
Alw26I GTCTC 4 cut(s) 107, 147, 259, 963
AlwI GGATC 5 cut(s) 153, 166, 449, 475, 691
Ama87I CYCGRG 2 cut(s) 1317, 1920
AoxI GGCC 4 cut(s) 115, 870, 1320, 1923
ApeKI GCWGC 4 cut(s) 199, 894, 1313, 1916
ArsI GACNNNNNNTTYG 4 cut(s) 1357, 1389, 1960, 1992
AseI ATTAAT 2 cut(s) 1479, 2082
Asp700I GAANNNNTTC 6 cut(s) 1143, 1385, 1695, 1746, 1988, 2298
AspLEI GCGC 4 cut(s) 860, 935, 1438, 2041
AspS9I GGNCC 3 cut(s) 939, 1320, 1923
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 7 cut(s) 325, 490, 601, 706, 817, 1657, 2260
AvaI CYCGRG 2 cut(s) 1317, 1920
AvaII GGWCC 1 cut(s) 939
BalI TGGCCA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 415
Bbv12I GWGCWC 2 cut(s) 373, 415
BbvI GCAGC 4 cut(s) 211, 906, 1325, 1928
BccI CCATC 2 cut(s) 41, 242
BceAI ACGGC 4 cut(s) 370, 857, 871, 943
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 3 cut(s) 635, 1248, 1851
BclI TGATCA 1 cut(s) 876
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 4 cut(s) 107, 147, 259, 963
BfaI CTAG 2 cut(s) 1457, 2060
BfmI CTRYAG 2 cut(s) 1311, 1914
BfoI RGCGCY 1 cut(s) 861
BfuAI ACCTGC 2 cut(s) 466, 682
BglII AGATCT 2 cut(s) 1693, 2296
BisI GCNGC 7 cut(s) 200, 531, 747, 895, 931, 1314, 1917
BlsI GCNGC 7 cut(s) 201, 532, 748, 896, 932, 1315, 1918
Bme1390I CCNGG 4 cut(s) 439, 635, 1248, 1851
Bme18I GGWCC 1 cut(s) 939
BmeT110I CYCGRG 2 cut(s) 1317, 1920
BmgT120I GGNCC 3 cut(s) 939, 1320, 1923
BmiI GGNNCC 4 cut(s) 160, 267, 1110, 1713
BmrFI CCNGG 4 cut(s) 439, 635, 1248, 1851
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 3 cut(s) 56, 1590, 2193
BmuI ACTGGG 1 cut(s) 1008
BpmI CTGGAG 3 cut(s) 449, 617, 833
BpuMI CCSGG 1 cut(s) 439
BsaAI YACGTR 2 cut(s) 1575, 2178
BsaHI GRCGYC 2 cut(s) 383, 405
BsaJI CCNNGG 5 cut(s) 106, 129, 925, 1246, 1849
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 175, 468, 1662, 2265
Bse1I ACTGG 3 cut(s) 1003, 1162, 1765
Bse3DI GCAATG 1 cut(s) 1090
BseBI CCWGG 3 cut(s) 635, 1248, 1851
BseDI CCNNGG 5 cut(s) 106, 129, 925, 1246, 1849
BseGI GGATG 3 cut(s) 320, 1581, 2184
BseLI CCNNNNNNNGG 5 cut(s) 130, 175, 468, 1662, 2265
BseMI GCAATG 1 cut(s) 1090
BseMII CTCAG 3 cut(s) 974, 1502, 2105
BseNI ACTGG 3 cut(s) 1003, 1162, 1765
BseRI GAGGAG 7 cut(s) 95, 562, 586, 611, 778, 802, 827
BseXI GCAGC 4 cut(s) 211, 906, 1325, 1928
BseYI CCCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 4 cut(s) 117, 872, 1322, 1925
BsiHKAI GWGCWC 2 cut(s) 373, 415
BsiHKCI CYCGRG 2 cut(s) 1317, 1920
BsiSI CCGG 3 cut(s) 391, 408, 438
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 5 cut(s) 130, 175, 468, 1662, 2265
BsmAI GTCTC 4 cut(s) 107, 147, 259, 963
BsmBI CGTCTC 2 cut(s) 107, 963
BsmFI GGGAC 1 cut(s) 904
BsnI GGCC 4 cut(s) 117, 872, 1322, 1925
BsoBI CYCGRG 2 cut(s) 1317, 1920
Bsp1286I GDGCHC 2 cut(s) 373, 415
BspANI GGCC 4 cut(s) 117, 872, 1322, 1925
BspCNI CTCAG 3 cut(s) 973, 1503, 2106
BspHI TCATGA 3 cut(s) 879, 1152, 1755
BspLI GGNNCC 4 cut(s) 160, 267, 1110, 1713
BspMAI CTGCAG 2 cut(s) 1315, 1918
BspMI ACCTGC 2 cut(s) 466, 682
BspPI GGATC 5 cut(s) 153, 166, 449, 475, 691
BsrDI GCAATG 1 cut(s) 1090
BsrI ACTGG 3 cut(s) 1003, 1162, 1765
BssECI CCNNGG 5 cut(s) 106, 129, 925, 1246, 1849
BssNI GRCGYC 2 cut(s) 383, 405
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 3 cut(s) 635, 1248, 1851
Bst6I CTCTTC 2 cut(s) 546, 762
BstACI GRCGYC 2 cut(s) 383, 405
BstBAI YACGTR 2 cut(s) 1575, 2178
BstC8I GCNNGC 5 cut(s) 373, 1275, 1311, 1878, 1914
BstDEI CTNAG 9 cut(s) 960, 1132, 1330, 1511, 1565, 1735, 1933, 2114, 2168
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 3 cut(s) 320, 1581, 2184
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 4 cut(s) 860, 935, 1438, 2041
BstMAI GTCTC 4 cut(s) 107, 147, 259, 963
BstMWI GCNNNNNNNGC 2 cut(s) 1319, 1922
BstNI CCWGG 3 cut(s) 635, 1248, 1851
BstNSI RCATGY 4 cut(s) 1277, 1436, 1880, 2039
BstSCI CCNGG 4 cut(s) 437, 633, 1246, 1849
BstSFI CTRYAG 2 cut(s) 1311, 1914
BstSNI TACGTA 2 cut(s) 1575, 2178
BstV1I GCAGC 4 cut(s) 211, 906, 1325, 1928
BstX2I RGATCY 3 cut(s) 158, 1693, 2296
BstYI RGATCY 3 cut(s) 158, 1693, 2296
BsuRI GGCC 4 cut(s) 117, 872, 1322, 1925
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 3 cut(s) 320, 1581, 2184
BtsI GCAGTG 7 cut(s) 180, 1268, 1349, 1527, 1871, 1952, 2130
BveI ACCTGC 2 cut(s) 466, 682
Cac8I GCNNGC 5 cut(s) 373, 1275, 1311, 1878, 1914
CciI TCATGA 3 cut(s) 879, 1152, 1755
CfoI GCGC 4 cut(s) 860, 935, 1438, 2041
Cfr13I GGNCC 3 cut(s) 939, 1320, 1923
CseI GACGC 2 cut(s) 391, 413
Csp6I GTAC 3 cut(s) 886, 1572, 2175
CviQI GTAC 3 cut(s) 886, 1572, 2175
DdeI CTNAG 9 cut(s) 960, 1132, 1330, 1511, 1565, 1735, 1933, 2114, 2168
DraIII CACNNNGTG 1 cut(s) 948
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 546, 762
EarI CTCTTC 2 cut(s) 546, 762
EciI GGCGGA 7 cut(s) 313, 484, 517, 574, 700, 733, 790
Ecl136II GAGCTC 1 cut(s) 413
Eco105I TACGTA 2 cut(s) 1575, 2178
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 939
Eco53kI GAGCTC 1 cut(s) 413
Eco57I CTGAAG 2 cut(s) 1682, 2285
Eco88I CYCGRG 2 cut(s) 1317, 1920
EcoICRI GAGCTC 1 cut(s) 413
EcoRII CCWGG 3 cut(s) 633, 1246, 1849
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 129
Esp3I CGTCTC 2 cut(s) 107, 963
FalI AAGNNNNNCTT 3 cut(s) 29, 437, 469
FaqI GGGAC 1 cut(s) 904
FauI CCCGC 1 cut(s) 253
FauNDI CATATG 2 cut(s) 467, 683
FbaI TGATCA 1 cut(s) 876
Fnu4HI GCNGC 7 cut(s) 200, 531, 747, 895, 931, 1314, 1917
FokI GGATG 3 cut(s) 307, 1568, 2171
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 7 cut(s) 200, 531, 747, 895, 931, 1314, 1917
FspAI RTGCGCAY 2 cut(s) 1437, 2040
FspBI CTAG 2 cut(s) 1457, 2060
FspI TGCGCA 2 cut(s) 1437, 2040
GlaI GCGC 4 cut(s) 859, 934, 1437, 2040
GluI GCNGC 7 cut(s) 200, 531, 747, 895, 931, 1314, 1917
GsaI CCCAGC 1 cut(s) 453
GsuI CTGGAG 3 cut(s) 449, 617, 833
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 4 cut(s) 117, 872, 1322, 1925
HapII CCGG 3 cut(s) 391, 408, 438
HgaI GACGC 2 cut(s) 391, 413
HhaI GCGC 4 cut(s) 860, 935, 1438, 2041
Hin1I GRCGYC 2 cut(s) 383, 405
Hin6I GCGC 4 cut(s) 858, 933, 1436, 2039
HinP1I GCGC 4 cut(s) 858, 933, 1436, 2039
HincII GTYRAC 2 cut(s) 1200, 1803
HindII GTYRAC 2 cut(s) 1200, 1803
HinfI GANTC 8 cut(s) 593, 809, 1188, 1346, 1561, 1791, 1949, 2164
HpaII CCGG 3 cut(s) 391, 408, 438
HphI GGTGA 7 cut(s) 325, 490, 601, 706, 817, 1657, 2260
Hpy166II GTNNAC 9 cut(s) 580, 796, 942, 1200, 1417, 1648, 1803, 2020, 2251
Hpy188III TCNNGA 7 cut(s) 37, 850, 880, 1153, 1613, 1756, 2216
Hpy8I GTNNAC 9 cut(s) 580, 796, 942, 1200, 1417, 1648, 1803, 2020, 2251
Hpy99I CGWCG 2 cut(s) 385, 407
HpyAV CCTTC 2 cut(s) 29, 128
HpyCH4IV ACGT 3 cut(s) 986, 1574, 2177
HpyF10VI GCNNNNNNNGC 2 cut(s) 1319, 1922
HpyF3I CTNAG 9 cut(s) 960, 1132, 1330, 1511, 1565, 1735, 1933, 2114, 2168
HpySE526I ACGT 3 cut(s) 986, 1574, 2177
Hsp92I GRCGYC 2 cut(s) 383, 405
HspAI GCGC 4 cut(s) 858, 933, 1436, 2039
Ksp22I TGATCA 1 cut(s) 876
LmnI GCTCC 8 cut(s) 410, 624, 636, 840, 852, 1045, 1625, 2228
Lsp1109I GCAGC 4 cut(s) 211, 906, 1325, 1928
LweI GCATC 3 cut(s) 56, 1590, 2193
MaeI CTAG 2 cut(s) 1457, 2060
MaeII ACGT 3 cut(s) 986, 1574, 2177
MaeIII GTNAC 4 cut(s) 178, 331, 1670, 2273
MfeI CAATTG 2 cut(s) 1500, 2103
MflI RGATCY 3 cut(s) 158, 1693, 2296
MhlI GDGCHC 2 cut(s) 373, 415
MlsI TGGCCA 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 2 cut(s) 587, 803
MmeI TCCRAC 3 cut(s) 193, 624, 840
Mox20I TGGCCA 1 cut(s) 117
MroXI GAANNNNTTC 6 cut(s) 1143, 1385, 1695, 1746, 1988, 2298
MscI TGGCCA 1 cut(s) 117
MseI TTAA 8 cut(s) 219, 1014, 1479, 1484, 1494, 2082, 2087, 2097
MslI CAYNNNNRTG 1 cut(s) 1100
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 2 cut(s) 1174, 1777
MspI CCGG 3 cut(s) 391, 408, 438
MspR9I CCNGG 4 cut(s) 439, 635, 1248, 1851
MunI CAATTG 2 cut(s) 1500, 2103
MvaI CCWGG 3 cut(s) 635, 1248, 1851
MwoI GCNNNNNNNGC 2 cut(s) 1319, 1922
NciI CCSGG 1 cut(s) 439
NdeI CATATG 2 cut(s) 467, 683
NlaIV GGNNCC 4 cut(s) 160, 267, 1110, 1713
NmuCI GTSAC 4 cut(s) 178, 331, 1670, 2273
NsbI TGCGCA 2 cut(s) 1437, 2040
NspI RCATGY 4 cut(s) 1277, 1436, 1880, 2039
PaeI GCATGC 2 cut(s) 1277, 1880
PagI TCATGA 3 cut(s) 879, 1152, 1755
PaqCI CACCTGC 2 cut(s) 466, 682
PcsI WCGNNNNNNNCGW 2 cut(s) 1416, 2019
PdmI GAANNNNTTC 6 cut(s) 1143, 1385, 1695, 1746, 1988, 2298
PfeI GAWTC 6 cut(s) 1188, 1346, 1561, 1791, 1949, 2164
PflMI CCANNNNNTGG 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 7 cut(s) 201, 532, 748, 896, 932, 1315, 1918
PleI GAGTC 2 cut(s) 587, 803
PpsI GAGTC 2 cut(s) 587, 803
Ppu21I YACGTR 2 cut(s) 1575, 2178
PshBI ATTAAT 2 cut(s) 1479, 2082
Psp124BI GAGCTC 1 cut(s) 415
Psp6I CCWGG 3 cut(s) 633, 1246, 1849
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 3 cut(s) 633, 1246, 1849
PspN4I GGNNCC 4 cut(s) 160, 267, 1110, 1713
PspPI GGNCC 3 cut(s) 939, 1320, 1923
PstI CTGCAG 2 cut(s) 1315, 1918
PsuI RGATCY 3 cut(s) 158, 1693, 2296
PvuII CAGCTG 2 cut(s) 1174, 1777
RsaI GTAC 3 cut(s) 887, 1573, 2176
RsaNI GTAC 3 cut(s) 886, 1572, 2175
RseI CAYNNNNRTG 1 cut(s) 1100
SacI GAGCTC 1 cut(s) 415
SaqAI TTAA 8 cut(s) 219, 1014, 1479, 1484, 1494, 2082, 2087, 2097
SatI GCNGC 7 cut(s) 200, 531, 747, 895, 931, 1314, 1917
Sau96I GGNCC 3 cut(s) 939, 1320, 1923
SchI GAGTC 2 cut(s) 587, 803
ScrFI CCNGG 4 cut(s) 439, 635, 1248, 1851
SduI GDGCHC 2 cut(s) 373, 415
SfaNI GCATC 3 cut(s) 56, 1590, 2193
SfcI CTRYAG 2 cut(s) 1311, 1914
SinI GGWCC 1 cut(s) 939
SmiMI CAYNNNNRTG 1 cut(s) 1100
SnaBI TACGTA 2 cut(s) 1575, 2178
SphI GCATGC 2 cut(s) 1277, 1880
SspMI CTAG 2 cut(s) 1457, 2060
SstI GAGCTC 1 cut(s) 415
StyD4I CCNGG 4 cut(s) 437, 633, 1246, 1849
StyI CCWWGG 1 cut(s) 129
TaiI ACGT 3 cut(s) 989, 1577, 2180
TaqI TCGA 4 cut(s) 402, 504, 662, 720
TauI GCSGC 3 cut(s) 533, 749, 933
TfiI GAWTC 6 cut(s) 1188, 1346, 1561, 1791, 1949, 2164
Tru1I TTAA 8 cut(s) 219, 1014, 1479, 1484, 1494, 2082, 2087, 2097
Tru9I TTAA 8 cut(s) 219, 1014, 1479, 1484, 1494, 2082, 2087, 2097
TseFI GTSAC 4 cut(s) 178, 331, 1670, 2273
TseI GCWGC 4 cut(s) 199, 894, 1313, 1916
Tsp45I GTSAC 4 cut(s) 178, 331, 1670, 2273
TspGWI ACGGA 5 cut(s) 319, 565, 781, 1425, 2028
Van91I CCANNNNNTGG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 939
VspI ATTAAT 2 cut(s) 1479, 2082
XceI RCATGY 4 cut(s) 1277, 1436, 1880, 2039
XcmI CCANNNNNNNNNTGG 1 cut(s) 1003
XmnI GAANNNNTTC 6 cut(s) 1143, 1385, 1695, 1746, 1988, 2298
XspI CTAG 2 cut(s) 1457, 2060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.