Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001385.1

Orthogroup ID

OG0007750

Physical Location & Seq

Genomic Coordinates Reverse (-)

15923 .. 18106

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

atggtctctgtggcagcttcggctccaacccacttgggtacacatacccagtttcattctttagaaaacccgccaattatactctttgaaaattgcaaatccatggaccaactgaagcaaatgcatgctcaaaccattaaaacaggtttcgcatcggacccggccgcgctcaacaggatcatagtcttctgttgtacccatgaatttggtgacatgaagtatgcacgccaggtgtttgatagaattcctgaaccaagtgttttcatttgtaacaccatgatcaaaggctatagtaggatacattgcccccgttatggggtatctatgtattcagcaatgcagaggatgggtgtgaagcccgattgctatacatttccgttcttgttgaggggattttctcctgagattgcgttggaatgggggagagggttccatgctcatgtgttgaagtatggtttcgattctaatgttttcattcacaatgcattggtgcagatgtactcattttgtggtcaagttgatacggcacgtgtggttttcgacatggtcagtgagaaggatgttgctacttggaatgcaatgatctctgggtacaataagatcaagaagttcgatgagtcctggaagcttttccatgacatggagaagaagggagtgtatcccacttctgttacccttgtctcggtactttcagcctgctccaaattgaaggatttagatgctgggaagcaggttcacaactacgtcaaggagtgtgtggtcgaacctaatctagttttggacaatgctttgattgacatgtatgctgcttgtgggaagatggatattgcacttgagatttttgagaatatgaaaaggagggatgtaatttcttggactaccattgttaaggggttttgcaattcaggacaagttgatttagctcgagattactttgatcagatgccagacagagactatatttcatggactgcaataattgatgggtacgtaagggtgaaccggttcaaagaggttttggaactcttccgtaagatgcagagttcaaatataaaaccagatgagtataccatggtaagcattctaacagcttgtgcacatcttggagcactagaactcggagaatggataaaaacttacattgacaaaaacatgatcaagaatgacacgtttgtgcgaaatgctttaatagacatgtatttcaagtgtggaaatattgaaaaagctgtgagggtgttcaatgcaatggttcaaagggacaaatttacctggacagctatgattgttggccttgctattaatggacatggtaaggaagctcttgacatgttcagtaaaatgctgaaatctgcagtagctccggacaagataacattgcttggtgttctttctgcgtgtactcactctggcatggtcgatgaaggtagaaactttttctctagtatgagcacccaacatgggattgagcctactgttgcgcattacgggtgcatggtggatcttcttggtcgagcagggcgtcttaaagaagcttatgaagttatacaaaacatgccaatagaaccaaactcagttgtatggggaactcttctcggtgcttgtagaatgcataaagatgcagaactagctgaagttgtggcaaaacagatgctagatttggatcctgaaaacagcgctgtttatgttctgttatgcaatatatatgcagcttgcaacaaatgggaaagattccgcgaggtaaggcaaacgattatggatagggggatcaagaagactcctggttgtagtttgatagaggtgaatggtgatgttcatgagtttgtagccggggatggctcacatcctcaatccgaaaagatatattccaagttggatgagatgattaaagacttgaaatctgcagggtattcacctgatacgtccgaggtttttcttgatgtaggggaagagaataaagagagtgcagtttataagcacagtgagaagttagcaattgcgtttggattgattagtttaggacctggggtgactattagagtcatgaagaacctcagaatctgcgtggattgtcacagcatggcaaagctggtttccaaggtgtatgatagagaagtgattgttagggatggaactcggttccaccatttcagacatggctcatgttcatgtaaagattattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

727

Amino Acids

82.14

Weight (kDa)

6.91

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	85 - 132	5.3e-09	PPR repeat family
PPR_2	PF13041	186 - 235	2.2e-13	PPR repeat family
PPR	PF01535	190 - 219	1.4e-07	PPR repeat
PPR_3	PF13812	209 - 268	3.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	288 - 315	7.1e-06	PPR repeat
PPR_2	PF13041	319 - 367	2.1e-12	PPR repeat family
PPR	PF01535	321 - 351	7.6e-07	PPR repeat
PPR_2	PF13041	420 - 466	6e-08	PPR repeat family
E_motif	PF20431	537 - 599	1.4e-15	E motif
Eplus_motif	PF20430	604 - 629	1.1e-07	E+ motif
DYW_deaminase	PF14432	635 - 727	4.7e-37	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15930
fragaria_vesca	FvH4_3g42650
malus_domestica	MD03G1030100.v1.1 MD11G1035200.v1.1 MD17G1214200.v1.1
prunus_persica	Prupe.3G090100_v2.0.a1 Prupe.6G026400_v2.0.a1
pyrus_communis	pycom17g21890
rosa_chinensis	RchiOBHm_Chr2g0134941 RchiOBHm_Chr5g0076281 RchiOBHm_Chr5g0076601 RchiOBHm_Chr5g0076611
rosa_laevigata	RLG00000019432 RLG00000036613
rosa_multiflora	Rmu_sc0001385.1_g000005 Rmu_sc0007475.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005580
rosa_rugosa	Rorug02G0321400 Rorug05G0446800
rosa_samantha	Rh2CG357900 Rh5AG501800 Rh5BG523600 Rh5CG547300
rosa_wichuraiana	Rw2G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1971
Acc16I	TGCGCA	1 cut(s)	1479
Acc36I	ACCTGC	1 cut(s)	721
AccB7I	CCANNNNNTGG	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	1067
AccII	CGCG	2 cut(s)	167, 1734
AccIII	TCCGGA	1 cut(s)	1360
AciI	CCGC	3 cut(s)	71, 165, 1732
AclWI	GGATC	5 cut(s)	185, 1506, 1655, 1668, 1772
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	3 cut(s)	203, 243, 1262
AcuI	CTGAAG	2 cut(s)	134, 1650
AcvI	CACGTG	1 cut(s)	530
AcyI	GRCGYC	1 cut(s)	1519
AfaI	GTAC	7 cut(s)	40, 196, 500, 593, 687, 989, 1399
AfeI	AGCGCT	1 cut(s)	1675
AfiI	CCNNNNNNNGG	6 cut(s)	314, 315, 316, 640, 682, 1458
AflIII	ACRYGT	5 cut(s)	529, 798, 1167, 1194, 1326
AgeI	ACCGGT	1 cut(s)	1002
AjnI	CCWGG	5 cut(s)	228, 620, 1268, 1777, 2020
AleI	CACNNNNGTG	1 cut(s)	1172
Alw21I	GWGCWC	3 cut(s)	1099, 1111, 1451
Alw26I	GTCTC	3 cut(s)	10, 685, 948
Alw44I	GTGCAC	1 cut(s)	1095
AlwI	GGATC	5 cut(s)	185, 1506, 1655, 1668, 1772
AlwNI	CAGNNNCTG	1 cut(s)	2058
Ama87I	CYCGRG	1 cut(s)	924
Aor13HI	TCCGGA	1 cut(s)	1360
Aor51HI	AGCGCT	1 cut(s)	1675
AoxI	GGCC	2 cut(s)	162, 1288
ApaLI	GTGCAC	1 cut(s)	1095
ApeKI	GCWGC	3 cut(s)	14, 806, 1706
ApoI	RAATTY	3 cut(s)	203, 243, 1262
AseI	ATTAAT	1 cut(s)	1299
AsiGI	ACCGGT	1 cut(s)	1002
Asp700I	GAANNNNTTC	2 cut(s)	629, 1004
AspLEI	GCGC	3 cut(s)	169, 1480, 1676
AspS9I	GGNCC	3 cut(s)	106, 157, 2018
AsuC2I	CCSGG	2 cut(s)	161, 1828
AsuHPI	GGTGA	6 cut(s)	221, 1009, 1810, 1817, 1902, 2038
AvaI	CYCGRG	1 cut(s)	924
AvaII	GGWCC	3 cut(s)	106, 157, 2018
BaeGI	GKGCMC	1 cut(s)	1099
BamHI	GGATCC	1 cut(s)	1660
BbrPI	CACGTG	1 cut(s)	530
BbsI	GAAGAC	2 cut(s)	178, 1778
Bbv12I	GWGCWC	3 cut(s)	1099, 1111, 1451
BbvI	GCAGC	3 cut(s)	26, 793, 1718
BccI	CCATC	5 cut(s)	340, 814, 977, 1826, 2120
BceAI	ACGGC	1 cut(s)	540
BciT130I	CCWGG	5 cut(s)	230, 622, 1270, 1779, 2022
BciVI	GTATCC	2 cut(s)	291, 669
BclI	TGATCA	3 cut(s)	279, 937, 1155
BcnI	CCSGG	2 cut(s)	161, 1828
BcoDI	GTCTC	3 cut(s)	10, 685, 948
BfaI	CTAG	5 cut(s)	773, 1112, 1440, 1625, 1652
BfmI	CTRYAG	3 cut(s)	289, 1350, 1899
BfoI	RGCGCY	1 cut(s)	1677
BfuAI	ACCTGC	1 cut(s)	721
BfuI	GTATCC	2 cut(s)	291, 669
BisI	GCNGC	4 cut(s)	15, 165, 807, 1707
BlsI	GCNGC	4 cut(s)	16, 166, 808, 1708
Bme1390I	CCNGG	7 cut(s)	161, 230, 622, 1270, 1779, 1828, 2022
Bme18I	GGWCC	3 cut(s)	106, 157, 2018
BmeT110I	CYCGRG	1 cut(s)	924
BmgT120I	GGNCC	3 cut(s)	106, 157, 2018
BmiI	GGNNCC	5 cut(s)	24, 159, 431, 1662, 2138
BmrFI	CCNGG	7 cut(s)	161, 230, 622, 1270, 1779, 1828, 2022
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	6 cut(s)	161, 709, 933, 1026, 1606, 1638
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	2 cut(s)	178, 1778
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	2 cut(s)	161, 1828
BsaAI	YACGTR	2 cut(s)	530, 991
BsaBI	GATNNNNATC	1 cut(s)	1659
BsaHI	GRCGYC	1 cut(s)	1519
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	6 cut(s)	102, 1071, 1827, 1923, 2021, 2094
BsaWI	WCCGGW	2 cut(s)	1002, 1360
Bsc4I	CCNNNNNNNGG	6 cut(s)	314, 315, 316, 640, 682, 1458
Bse118I	RCCGGY	1 cut(s)	1002
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	5 cut(s)	301, 342, 585, 1251, 1373
Bse8I	GATNNNNATC	1 cut(s)	1659
BseAI	TCCGGA	1 cut(s)	1360
BseBI	CCWGG	5 cut(s)	230, 622, 1270, 1779, 2022
BseDI	CCNNGG	6 cut(s)	102, 1071, 1827, 1923, 2021, 2094
BseGI	GGATG	7 cut(s)	351, 565, 868, 1837, 1840, 1879, 2131
BseJI	GATNNNNATC	1 cut(s)	1659
BseLI	CCNNNNNNNGG	6 cut(s)	314, 315, 316, 640, 682, 1458
BseMI	GCAATG	5 cut(s)	301, 342, 585, 1251, 1373
BseMII	CTCAG	3 cut(s)	393, 1584, 2065
BseNI	ACTGG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	1099
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	26, 793, 1718
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	2 cut(s)	512, 1983
Bsh1236I	CGCG	2 cut(s)	167, 1734
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	164, 1290
BshTI	ACCGGT	1 cut(s)	1002
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	3 cut(s)	1099, 1111, 1451
BsiHKCI	CYCGRG	1 cut(s)	924
BsiSI	CCGG	4 cut(s)	161, 1003, 1361, 1827
BslFI	GGGAC	1 cut(s)	1271
BslI	CCNNNNNNNGG	6 cut(s)	314, 315, 316, 640, 682, 1458
BsmAI	GTCTC	3 cut(s)	10, 685, 948
BsmFI	GGGAC	1 cut(s)	1271
BsmI	GAATGC	3 cut(s)	580, 1080, 1611
BsnI	GGCC	2 cut(s)	164, 1290
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	924
Bsp1286I	GDGCHC	3 cut(s)	1099, 1111, 1451
Bsp13I	TCCGGA	1 cut(s)	1360
Bsp143I	GATC	9 cut(s)	177, 279, 582, 600, 937, 1155, 1498, 1660, 1764
Bsp19I	CCATGG	2 cut(s)	102, 1071
BspACI	CCGC	3 cut(s)	71, 165, 1732
BspANI	GGCC	2 cut(s)	164, 1290
BspCNI	CTCAG	3 cut(s)	394, 1583, 2064
BspEI	TCCGGA	1 cut(s)	1360
BspFNI	CGCG	2 cut(s)	167, 1734
BspHI	TCATGA	2 cut(s)	1813, 2040
BspLI	GGNNCC	5 cut(s)	24, 159, 431, 1662, 2138
BspMAI	CTGCAG	2 cut(s)	1354, 1903
BspMI	ACCTGC	1 cut(s)	721
BspPI	GGATC	5 cut(s)	185, 1506, 1655, 1668, 1772
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	5 cut(s)	301, 342, 585, 1251, 1373
BsrFI	RCCGGY	1 cut(s)	1002
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	1002
BssECI	CCNNGG	6 cut(s)	102, 1071, 1827, 1923, 2021, 2094
BssMI	GATC	9 cut(s)	177, 279, 582, 600, 937, 1155, 1498, 1660, 1764
BssNAI	GTATAC	1 cut(s)	1068
BssNI	GRCGYC	1 cut(s)	1519
BssT1I	CCWWGG	3 cut(s)	102, 1071, 2094
Bst1107I	GTATAC	1 cut(s)	1068
Bst2UI	CCWGG	5 cut(s)	230, 622, 1270, 1779, 2022
Bst4CI	ACNGT	2 cut(s)	1474, 1979
Bst6I	CTCTTC	3 cut(s)	1031, 1593, 1941
BstACI	GRCGYC	1 cut(s)	1519
BstBAI	YACGTR	2 cut(s)	530, 991
BstC8I	GCNNGC	4 cut(s)	126, 226, 697, 1711
BstDEI	CTNAG	3 cut(s)	402, 1570, 2051
BstDSI	CCRYGG	2 cut(s)	102, 1071
BstF5I	GGATG	7 cut(s)	351, 565, 868, 1837, 1840, 1879, 2131
BstFNI	CGCG	2 cut(s)	167, 1734
BstH2I	RGCGCY	1 cut(s)	1677
BstHHI	GCGC	3 cut(s)	169, 1480, 1676
BstKTI	GATC	9 cut(s)	180, 282, 585, 603, 940, 1158, 1501, 1663, 1767
BstMAI	GTCTC	3 cut(s)	10, 685, 948
BstMBI	GATC	9 cut(s)	177, 279, 582, 600, 937, 1155, 1498, 1660, 1764
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 1625
BstNI	CCWGG	5 cut(s)	230, 622, 1270, 1779, 2022
BstNSI	RCATGY	5 cut(s)	128, 802, 1198, 1330, 1555
BstSCI	CCNGG	7 cut(s)	159, 228, 620, 1268, 1777, 1826, 2020
BstSFI	CTRYAG	3 cut(s)	289, 1350, 1899
BstSLI	GKGCMC	1 cut(s)	1099
BstSNI	TACGTA	1 cut(s)	991
BstUI	CGCG	2 cut(s)	167, 1734
BstV1I	GCAGC	3 cut(s)	26, 793, 1718
BstV2I	GAAGAC	2 cut(s)	178, 1778
BstX2I	RGATCY	2 cut(s)	1498, 1660
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstYI	RGATCY	2 cut(s)	1498, 1660
BstZ17I	GTATAC	1 cut(s)	1068
BstZI	CGGCCG	1 cut(s)	162
BsuI	GTATCC	2 cut(s)	291, 669
BsuRI	GGCC	2 cut(s)	164, 1290
BtgI	CCRYGG	2 cut(s)	102, 1071
BtsCI	GGATG	7 cut(s)	351, 565, 868, 1837, 1840, 1879, 2131
BtsIMutI	CAGTG	2 cut(s)	556, 1984
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	4 cut(s)	126, 226, 697, 1711
CaiI	CAGNNNCTG	1 cut(s)	2058
CciI	TCATGA	2 cut(s)	1813, 2040
CfoI	GCGC	3 cut(s)	169, 1480, 1676
Cfr10I	RCCGGY	1 cut(s)	1002
Cfr13I	GGNCC	3 cut(s)	106, 157, 2018
CseI	GACGC	1 cut(s)	1508
Csp6I	GTAC	7 cut(s)	39, 195, 499, 592, 686, 988, 1398
CspAI	ACCGGT	1 cut(s)	1002
CviQI	GTAC	7 cut(s)	39, 195, 499, 592, 686, 988, 1398
DdeI	CTNAG	3 cut(s)	402, 1570, 2051
DpnI	GATC	9 cut(s)	179, 281, 584, 602, 939, 1157, 1500, 1662, 1766
DpnII	GATC	9 cut(s)	177, 279, 582, 600, 937, 1155, 1498, 1660, 1764
EaeI	YGGCCR	1 cut(s)	162
EagI	CGGCCG	1 cut(s)	162
Eam1104I	CTCTTC	3 cut(s)	1031, 1593, 1941
EarI	CTCTTC	3 cut(s)	1031, 1593, 1941
EclXI	CGGCCG	1 cut(s)	162
Eco105I	TACGTA	1 cut(s)	991
Eco130I	CCWWGG	3 cut(s)	102, 1071, 2094
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	3 cut(s)	106, 157, 2018
Eco47III	AGCGCT	1 cut(s)	1675
Eco52I	CGGCCG	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	134, 1650
Eco72I	CACGTG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	924
EcoO109I	RGGNCCY	1 cut(s)	2018
EcoRI	GAATTC	1 cut(s)	243
EcoRII	CCWGG	5 cut(s)	228, 620, 1268, 1777, 2020
EcoT14I	CCWWGG	3 cut(s)	102, 1071, 2094
EcoT22I	ATGCAT	3 cut(s)	126, 487, 1611
ErhI	CCWWGG	3 cut(s)	102, 1071, 2094
FaqI	GGGAC	1 cut(s)	1271
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	3 cut(s)	279, 937, 1155
FblI	GTMKAC	1 cut(s)	1067
Fnu4HI	GCNGC	4 cut(s)	15, 165, 807, 1707
FokI	GGATG	7 cut(s)	358, 572, 875, 1827, 1844, 1886, 2138
Fsp4HI	GCNGC	4 cut(s)	15, 165, 807, 1707
FspBI	CTAG	5 cut(s)	773, 1112, 1440, 1625, 1652
FspI	TGCGCA	1 cut(s)	1479
GlaI	GCGC	3 cut(s)	168, 1479, 1675
GluI	GCNGC	4 cut(s)	15, 165, 807, 1707
GsaI	CCCAGC	1 cut(s)	726
HaeII	RGCGCY	1 cut(s)	1677
HaeIII	GGCC	2 cut(s)	164, 1290
HapII	CCGG	4 cut(s)	161, 1003, 1361, 1827
HgaI	GACGC	1 cut(s)	1508
HhaI	GCGC	3 cut(s)	169, 1480, 1676
Hin1I	GRCGYC	1 cut(s)	1519
Hin6I	GCGC	3 cut(s)	167, 1478, 1674
HinP1I	GCGC	3 cut(s)	167, 1478, 1674
HindIII	AAGCTT	2 cut(s)	626, 1530
HinfI	GANTC	6 cut(s)	461, 617, 1728, 1774, 2037, 2055
HpaII	CCGG	4 cut(s)	161, 1003, 1361, 1827
HphI	GGTGA	6 cut(s)	221, 1009, 1810, 1817, 1902, 2038
Hpy166II	GTNNAC	6 cut(s)	41, 736, 1000, 1068, 1097, 1398
Hpy188I	TCNGA	7 cut(s)	157, 942, 1121, 1852, 1924, 2054, 2150
Hpy8I	GTNNAC	6 cut(s)	41, 736, 1000, 1068, 1097, 1398
HpyAV	CCTTC	4 cut(s)	550, 643, 703, 1415
HpyCH4III	ACNGT	2 cut(s)	1474, 1979
HpyCH4IV	ACGT	5 cut(s)	529, 744, 990, 1169, 1919
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 1625
HpyF3I	CTNAG	3 cut(s)	402, 1570, 2051
HpySE526I	ACGT	5 cut(s)	529, 744, 990, 1169, 1919
Hsp92I	GRCGYC	1 cut(s)	1519
HspAI	GCGC	3 cut(s)	167, 1478, 1674
Kpn2I	TCCGGA	1 cut(s)	1360
Ksp22I	TGATCA	3 cut(s)	279, 937, 1155
Kzo9I	GATC	9 cut(s)	177, 279, 582, 600, 937, 1155, 1498, 1660, 1764
LmnI	GCTCC	4 cut(s)	28, 704, 1106, 1363
Lsp1109I	GCAGC	3 cut(s)	26, 793, 1718
LweI	GCATC	6 cut(s)	161, 709, 933, 1026, 1606, 1638
MaeI	CTAG	5 cut(s)	773, 1112, 1440, 1625, 1652
MaeII	ACGT	5 cut(s)	529, 744, 990, 1169, 1919
MaeIII	GTNAC	5 cut(s)	209, 269, 670, 2026, 2069
MalI	GATC	9 cut(s)	179, 281, 584, 602, 939, 1157, 1500, 1662, 1766
MboI	GATC	9 cut(s)	177, 279, 582, 600, 937, 1155, 1498, 1660, 1764
MboII	GAAGA	9 cut(s)	178, 658, 829, 1018, 1493, 1580, 1783, 1958, 2056
MfeI	CAATTG	1 cut(s)	1992
MflI	RGATCY	2 cut(s)	1498, 1660
MhlI	GDGCHC	3 cut(s)	1099, 1111, 1451
MlyI	GAGTC	3 cut(s)	626, 1768, 2046
MmeI	TCCRAC	3 cut(s)	50, 393, 1851
Mph1103I	ATGCAT	3 cut(s)	126, 487, 1611
MroI	TCCGGA	1 cut(s)	1360
MroXI	GAANNNNTTC	2 cut(s)	629, 1004
MseI	TTAA	6 cut(s)	138, 888, 1187, 1299, 1524, 1884
MslI	CAYNNNNRTG	4 cut(s)	438, 1172, 1614, 2164
MspI	CCGG	4 cut(s)	161, 1003, 1361, 1827
MspR9I	CCNGG	7 cut(s)	161, 230, 622, 1270, 1779, 1828, 2022
MunI	CAATTG	1 cut(s)	1992
Mva1269I	GAATGC	3 cut(s)	580, 1080, 1611
MvaI	CCWGG	5 cut(s)	230, 622, 1270, 1779, 2022
MvnI	CGCG	2 cut(s)	167, 1734
MwoI	GCNNNNNNNGC	2 cut(s)	20, 1625
NciI	CCSGG	2 cut(s)	161, 1828
NcoI	CCATGG	2 cut(s)	102, 1071
NdeII	GATC	9 cut(s)	177, 279, 582, 600, 937, 1155, 1498, 1660, 1764
NlaIV	GGNNCC	5 cut(s)	24, 159, 431, 1662, 2138
NmuCI	GTSAC	3 cut(s)	209, 2026, 2069
NsbI	TGCGCA	1 cut(s)	1479
NsiI	ATGCAT	3 cut(s)	126, 487, 1611
NspI	RCATGY	5 cut(s)	128, 802, 1198, 1330, 1555
OliI	CACNNNNGTG	1 cut(s)	1172
PaeI	GCATGC	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	924
PagI	TCATGA	2 cut(s)	1813, 2040
PciI	ACATGT	3 cut(s)	798, 1194, 1326
PcsI	WCGNNNNNNNCGW	1 cut(s)	1516
PctI	GAATGC	3 cut(s)	580, 1080, 1611
PdmI	GAANNNNTTC	2 cut(s)	629, 1004
PfeI	GAWTC	3 cut(s)	461, 1728, 2055
PflFI	GACNNNGTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	640
PfoI	TCCNGGA	1 cut(s)	620
PinAI	ACCGGT	1 cut(s)	1002
PkrI	GCNGC	4 cut(s)	16, 166, 808, 1708
PleI	GAGTC	3 cut(s)	625, 1768, 2045
PmaCI	CACGTG	1 cut(s)	530
PmlI	CACGTG	1 cut(s)	530
PpsI	GAGTC	3 cut(s)	625, 1768, 2045
Ppu21I	YACGTR	2 cut(s)	530, 991
PpuMI	RGGWCCY	1 cut(s)	2018
PscI	ACATGT	3 cut(s)	798, 1194, 1326
PshBI	ATTAAT	1 cut(s)	1299
PsiI	TTATAA	1 cut(s)	1971
Psp5II	RGGWCCY	1 cut(s)	2018
Psp6I	CCWGG	5 cut(s)	228, 620, 1268, 1777, 2020
PspCI	CACGTG	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	5 cut(s)	228, 620, 1268, 1777, 2020
PspN4I	GGNNCC	5 cut(s)	24, 159, 431, 1662, 2138
PspPI	GGNCC	3 cut(s)	106, 157, 2018
PspPPI	RGGWCCY	1 cut(s)	2018
PstI	CTGCAG	2 cut(s)	1354, 1903
PstNI	CAGNNNCTG	1 cut(s)	2058
PsuI	RGATCY	2 cut(s)	1498, 1660
PsyI	GACNNNGTC	1 cut(s)	545
RsaI	GTAC	7 cut(s)	40, 196, 500, 593, 687, 989, 1399
RsaNI	GTAC	7 cut(s)	39, 195, 499, 592, 686, 988, 1398
RseI	CAYNNNNRTG	4 cut(s)	438, 1172, 1614, 2164
SaqAI	TTAA	6 cut(s)	138, 888, 1187, 1299, 1524, 1884
SatI	GCNGC	4 cut(s)	15, 165, 807, 1707
Sau3AI	GATC	9 cut(s)	177, 279, 582, 600, 937, 1155, 1498, 1660, 1764
Sau96I	GGNCC	3 cut(s)	106, 157, 2018
SchI	GAGTC	3 cut(s)	626, 1768, 2046
ScrFI	CCNGG	7 cut(s)	161, 230, 622, 1270, 1779, 1828, 2022
SduI	GDGCHC	3 cut(s)	1099, 1111, 1451
SfaNI	GCATC	6 cut(s)	161, 709, 933, 1026, 1606, 1638
SfcI	CTRYAG	3 cut(s)	289, 1350, 1899
Sfr274I	CTCGAG	1 cut(s)	924
SinI	GGWCC	3 cut(s)	106, 157, 2018
SlaI	CTCGAG	1 cut(s)	924
SmiMI	CAYNNNNRTG	4 cut(s)	438, 1172, 1614, 2164
SmlI	CTYRAG	2 cut(s)	833, 924
SmoI	CTYRAG	2 cut(s)	833, 924
SnaBI	TACGTA	1 cut(s)	991
SphI	GCATGC	1 cut(s)	128
SsiI	CCGC	3 cut(s)	71, 165, 1732
SspI	AATATT	1 cut(s)	1216
SspMI	CTAG	5 cut(s)	773, 1112, 1440, 1625, 1652
StyD4I	CCNGG	7 cut(s)	159, 228, 620, 1268, 1777, 1826, 2020
StyI	CCWWGG	3 cut(s)	102, 1071, 2094
TaaI	ACNGT	2 cut(s)	1474, 1979
TaiI	ACGT	5 cut(s)	532, 747, 993, 1172, 1922
TaqI	TCGA	7 cut(s)	459, 540, 612, 762, 925, 1416, 1510
TatI	WGTACW	2 cut(s)	498, 1397
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	3 cut(s)	461, 1728, 2055
Tru1I	TTAA	6 cut(s)	138, 888, 1187, 1299, 1524, 1884
Tru9I	TTAA	6 cut(s)	138, 888, 1187, 1299, 1524, 1884
TscAI	CASTG	2 cut(s)	556, 1984
TseFI	GTSAC	3 cut(s)	209, 2026, 2069
TseI	GCWGC	3 cut(s)	14, 806, 1706
Tsp45I	GTSAC	3 cut(s)	209, 2026, 2069
TspGWI	ACGGA	2 cut(s)	366, 1019
TspRI	CASTG	2 cut(s)	556, 1984
Tth111I	GACNNNGTC	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	640
VneI	GTGCAC	1 cut(s)	1095
VpaK11BI	GGWCC	3 cut(s)	106, 157, 2018
VspI	ATTAAT	1 cut(s)	1299
XapI	RAATTY	3 cut(s)	203, 243, 1262
XceI	RCATGY	5 cut(s)	128, 802, 1198, 1330, 1555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2150
XhoI	CTCGAG	1 cut(s)	924
XmiI	GTMKAC	1 cut(s)	1067
XmnI	GAANNNNTTC	2 cut(s)	629, 1004
XspI	CTAG	5 cut(s)	773, 1112, 1440, 1625, 1652
Zsp2I	ATGCAT	3 cut(s)	126, 487, 1611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.