Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001387.1

Orthogroup ID

OG0002572

Physical Location & Seq

Genomic Coordinates Reverse (-)

17239 .. 19844

Gene Structure 2606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggagatagaggacactacccatagatgcaatagcccactcaaaggtttactgatgaggaagaggaagaagaaagtaaaaggtcacactggatttgtctataaagatacgaaggccacgctcaccccctcccctcctatcctccctctccctctccccctccatcttccgtctctctgtaaagatcgccattacagctccggtgggagttctcgaagattctcaacaaatatacagcccggcccttctgcgaatctctttccggtggaagaatcaaattggaagaacagaaagatggaaatgcagcaatactgtgcacatgaatggaagtccatcttaggtgcaacagccgattctgaaaattctaaaggcggctttgactgcaacatctgcttagactttgcacacgagccagtggtcaccctctgtggccatctgtactgctggccttgcatctacaaatggcttcacgtccagagcgcctcccttgcgcctgatgagtgccctcagtgccctgtttgcaagactgagatatcacacaccaccatggtccccctttatggccgtggccaaacaacttcagaagctgagctcaaaggaaaggcaccctcccggggaataatagtacctcccagaccatcagcatgggatgcacaagctcttctatctaactcacctcgtaatggtcagcaacttccatatcgtaacccttatcagaaccaacaatatagctctcatccctacagcagttatgaggaacaatcttcctcaccactgcttagcctcggaggcacaacgttagctggtatcaaccatccgatggctggtctatttggggagatggtttatgcaagggtgttcggaaactctgagagcttatacgcgtatccaaattcgtaccacctaacgggcagtagtagtccaaggttgagaaggcacgagatgcaggcagaaaagtccctaaacagaatttctttcttcctcttctgttgcttgcttttgtgccttattgttttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

339

Amino Acids

37.92

Weight (kDa)

8.85

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	127 - 174	1.5e-06	Ring finger domain
zf-C3HC4	PF00097	128 - 174	2.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	128 - 171	3.6e-06	Zinc finger, C3HC4 type (RING finger)
RING_XB3-XBAT31	PF24921	128 - 179	9.2e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-RING_UBOX	PF13445	128 - 157	7.5e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27470
fragaria_vesca	FvH4_3g09330 FvH4_3g09330 FvH4_3g20120 FvH4_3g20120
malus_domestica	MD00G1096000.v1.1 MD03G1226000.v1.1 MD05G1313600.v1.1 MD11G1245000.v1.1
prunus_persica	Prupe.4G046100_v2.0.a1 Prupe.4G046100_v2.0.a1 Prupe.4G183300_v2.0.a1 Prupe.4G183300_v2.0.a1
pyrus_communis	pycom03g17380 pycom05g29140 pycom11g21710
rosa_chinensis	RchiOBHm_Chr5g0008261 RchiOBHm_Chr5g0033921
rosa_laevigata	RLG00000031556 RLG00000033511
rosa_multiflora	Rmu_co8308883.1_g000001 Rmu_sc0001150.1_g000012 Rmu_sc0001387.1_g000006 Rmu_sc0007228.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046290 Rroxscaffold_1G00068210
rosa_rugosa	Rorug04G0434700 Rorug04G0434700 Rorug05G0143400
rosa_samantha	Rh2AG319600 Rh5AG063300 Rh5AG234200 Rh5BG059500 Rh5BG234800 Rh5CG070100 Rh5CG265100 Rh5DG059200 Rh5DG241700
rosa_wichuraiana	Rw5G005760 Rw5G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	604
AccB7I	CCANNNNNTGG	1 cut(s)	820
AccII	CGCG	1 cut(s)	884
AciI	CCGC	1 cut(s)	372
AclI	AACGTT	1 cut(s)	797
AcoI	YGGCCR	3 cut(s)	430, 562, 568
AcsI	RAATTY	3 cut(s)	361, 892, 969
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	3 cut(s)	440, 627, 899
AfiI	CCNNNNNNNGG	7 cut(s)	44, 560, 614, 683, 820, 824, 907
AflIII	ACRYGT	1 cut(s)	882
AjiI	CACGTC	1 cut(s)	472
AluBI	AGCT	7 cut(s)	198, 587, 592, 659, 732, 803, 876
AluI	AGCT	7 cut(s)	198, 587, 592, 659, 732, 803, 876
Alw21I	GWGCWC	2 cut(s)	319, 594
Alw26I	GTCTC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	6 cut(s)	114, 241, 430, 446, 562, 568
ApaLI	GTGCAC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	3 cut(s)	361, 892, 969
AspLEI	GCGC	2 cut(s)	482, 493
AspS9I	GGNCC	2 cut(s)	242, 550
AsuC2I	CCSGG	3 cut(s)	240, 613, 614
AsuHPI	GGTGA	4 cut(s)	115, 412, 666, 762
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	550
BaeGI	GKGCMC	3 cut(s)	319, 506, 515
BalI	TGGCCA	2 cut(s)	432, 570
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	594
BauI	CACGAG	2 cut(s)	407, 938
Bbv12I	GWGCWC	2 cut(s)	319, 594
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	8 cut(s)	171, 289, 341, 441, 646, 814, 822, 835
BceAI	ACGGC	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	897
BcnI	CCSGG	3 cut(s)	240, 613, 614
BcoDI	GTCTC	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	742
BfoI	RGCGCY	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	897
BglI	GCCNNNNNGGC	1 cut(s)	789
BisI	GCNGC	2 cut(s)	305, 373
BlpI	GCTNAGC	2 cut(s)	588, 779
BlsI	GCNGC	2 cut(s)	306, 374
Bme1390I	CCNGG	3 cut(s)	240, 613, 614
Bme18I	GGWCC	1 cut(s)	550
BmeT110I	CYCGRG	1 cut(s)	612
BmgBI	CACGTC	1 cut(s)	472
BmgT120I	GGNCC	2 cut(s)	242, 550
BmiI	GGNNCC	2 cut(s)	552, 606
BmrFI	CCNGG	3 cut(s)	240, 613, 614
BmsI	GCATC	4 cut(s)	17, 462, 640, 933
Bpu1102I	GCTNAGC	2 cut(s)	588, 779
BpuMI	CCSGG	3 cut(s)	240, 613, 614
BsaJI	CCNNGG	6 cut(s)	546, 565, 612, 613, 784, 923
BsaWI	WCCGGW	2 cut(s)	200, 262
Bsc4I	CCNNNNNNNGG	7 cut(s)	44, 560, 614, 683, 820, 824, 907
Bse1I	ACTGG	2 cut(s)	94, 413
BseDI	CCNNGG	6 cut(s)	546, 565, 612, 613, 784, 923
BseGI	GGATG	3 cut(s)	655, 736, 814
BseLI	CCNNNNNNNGG	7 cut(s)	44, 560, 614, 683, 820, 824, 907
BseMII	CTCAG	4 cut(s)	519, 521, 579, 861
BseNI	ACTGG	2 cut(s)	94, 413
BseSI	GKGCMC	3 cut(s)	319, 506, 515
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	884
BshFI	GGCC	6 cut(s)	116, 243, 432, 448, 564, 570
BshNI	GGYRCC	1 cut(s)	604
BsiHKAI	GWGCWC	2 cut(s)	319, 594
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	4 cut(s)	201, 240, 263, 613
BslFI	GGGAC	2 cut(s)	536, 943
BslI	CCNNNNNNNGG	7 cut(s)	44, 560, 614, 683, 820, 824, 907
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	536, 943
BsnI	GGCC	6 cut(s)	116, 243, 432, 448, 564, 570
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	4 cut(s)	319, 506, 515, 594
Bsp143I	GATC	1 cut(s)	184
Bsp1720I	GCTNAGC	2 cut(s)	588, 779
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	6 cut(s)	116, 243, 432, 448, 564, 570
BspCNI	CTCAG	4 cut(s)	520, 520, 580, 862
BspFNI	CGCG	1 cut(s)	884
BspLI	GGNNCC	2 cut(s)	552, 606
BspQI	GCTCTTC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	604
BsrI	ACTGG	2 cut(s)	94, 413
BssECI	CCNNGG	6 cut(s)	546, 565, 612, 613, 784, 923
BssMI	GATC	1 cut(s)	184
BssSI	CACGAG	2 cut(s)	407, 938
BssT1I	CCWWGG	2 cut(s)	546, 923
Bst2BI	CACGAG	2 cut(s)	407, 938
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	3 cut(s)	56, 666, 989
BstAPI	GCANNNNNTGC	3 cut(s)	390, 650, 943
BstC8I	GCNNGC	3 cut(s)	446, 948, 995
BstDEI	CTNAG	7 cut(s)	337, 394, 507, 528, 588, 779, 870
BstDSI	CCRYGG	2 cut(s)	546, 565
BstEII	GGTNACC	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	655, 736, 814
BstFNI	CGCG	1 cut(s)	884
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	2 cut(s)	482, 493
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	184
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	238, 611, 612
BstSFI	CTRYAG	1 cut(s)	742
BstSLI	GKGCMC	3 cut(s)	319, 506, 515
BstUI	CGCG	1 cut(s)	884
BstV1I	GCAGC	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	897
BsuRI	GGCC	6 cut(s)	116, 243, 432, 448, 564, 570
BtgI	CCRYGG	2 cut(s)	546, 565
BtrI	CACGTC	1 cut(s)	472
BtsCI	GGATG	3 cut(s)	655, 736, 814
BtsI	GCAGTG	1 cut(s)	773
BtsIMutI	CAGTG	4 cut(s)	87, 420, 515, 773
Cac8I	GCNNGC	3 cut(s)	446, 948, 995
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	2 cut(s)	482, 493
Cfr13I	GGNCC	2 cut(s)	242, 550
Cfr9I	CCCGGG	1 cut(s)	612
Csp6I	GTAC	3 cut(s)	439, 626, 898
CviAII	CATG	3 cut(s)	320, 547, 645
CviQI	GTAC	3 cut(s)	439, 626, 898
DdeI	CTNAG	7 cut(s)	337, 394, 507, 528, 588, 779, 870
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	3 cut(s)	430, 562, 568
Eam1104I	CTCTTC	3 cut(s)	56, 666, 989
EarI	CTCTTC	3 cut(s)	56, 666, 989
Ecl136II	GAGCTC	1 cut(s)	592
Eco130I	CCWWGG	2 cut(s)	546, 923
Eco24I	GRGCYC	1 cut(s)	594
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	612
Eco91I	GGTNACC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	2 cut(s)	546, 923
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	2 cut(s)	546, 923
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	3 cut(s)	323, 550, 648
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	2 cut(s)	536, 943
FatI	CATG	3 cut(s)	319, 546, 644
Fnu4HI	GCNGC	2 cut(s)	305, 373
FokI	GGATG	3 cut(s)	662, 723, 801
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	2 cut(s)	305, 373
GlaI	GCGC	2 cut(s)	481, 492
GluI	GCNGC	2 cut(s)	305, 373
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	6 cut(s)	116, 243, 432, 448, 564, 570
HapII	CCGG	4 cut(s)	201, 240, 263, 613
HhaI	GCGC	2 cut(s)	482, 493
Hin1II	CATG	3 cut(s)	323, 550, 648
Hin6I	GCGC	2 cut(s)	480, 491
HinP1I	GCGC	2 cut(s)	480, 491
HinfI	GANTC	4 cut(s)	219, 253, 272, 353
HpaII	CCGG	4 cut(s)	201, 240, 263, 613
HphI	GGTGA	4 cut(s)	115, 412, 666, 762
Hpy166II	GTNNAC	2 cut(s)	50, 317
Hpy188I	TCNGA	8 cut(s)	358, 583, 717, 788, 819, 863, 871, 1019
Hpy188III	TCNNGA	2 cut(s)	213, 475
Hpy8I	GTNNAC	2 cut(s)	50, 317
HpyAV	CCTTC	3 cut(s)	106, 255, 927
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	2 cut(s)	471, 797
HpyF3I	CTNAG	7 cut(s)	337, 394, 507, 528, 588, 779, 870
HpySE526I	ACGT	2 cut(s)	471, 797
Hsp92II	CATG	3 cut(s)	323, 550, 648
HspAI	GCGC	2 cut(s)	480, 491
Kzo9I	GATC	1 cut(s)	184
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	1 cut(s)	203
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	4 cut(s)	17, 462, 640, 933
MaeII	ACGT	2 cut(s)	471, 797
MaeIII	GTNAC	3 cut(s)	83, 418, 704
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MhlI	GDGCHC	4 cut(s)	319, 506, 515, 594
MlsI	TGGCCA	2 cut(s)	432, 570
MluCI	AATT	4 cut(s)	277, 361, 892, 969
MluI	ACGCGT	1 cut(s)	882
MluNI	TGGCCA	2 cut(s)	432, 570
Mox20I	TGGCCA	2 cut(s)	432, 570
MscI	TGGCCA	2 cut(s)	432, 570
MslI	CAYNNNNRTG	3 cut(s)	322, 545, 643
Msp20I	TGGCCA	2 cut(s)	432, 570
MspI	CCGG	4 cut(s)	201, 240, 263, 613
MspR9I	CCNGG	3 cut(s)	240, 613, 614
MvnI	CGCG	1 cut(s)	884
NciI	CCSGG	3 cut(s)	240, 613, 614
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	323, 550, 648
NlaIV	GGNNCC	2 cut(s)	552, 606
NmuCI	GTSAC	2 cut(s)	83, 418
PciSI	GCTCTTC	1 cut(s)	666
PfeI	GAWTC	4 cut(s)	219, 253, 272, 353
PflMI	CCANNNNNTGG	1 cut(s)	820
PkrI	GCNGC	2 cut(s)	306, 374
Psp124BI	GAGCTC	1 cut(s)	594
Psp1406I	AACGTT	1 cut(s)	797
PspEI	GGTNACC	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	552, 606
PspPI	GGNCC	2 cut(s)	242, 550
PstNI	CAGNNNCTG	1 cut(s)	587
RsaI	GTAC	3 cut(s)	440, 627, 899
RsaNI	GTAC	3 cut(s)	439, 626, 898
RseI	CAYNNNNRTG	3 cut(s)	322, 545, 643
SacI	GAGCTC	1 cut(s)	594
SapI	GCTCTTC	1 cut(s)	666
SatI	GCNGC	2 cut(s)	305, 373
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	2 cut(s)	242, 550
ScrFI	CCNGG	3 cut(s)	240, 613, 614
SduI	GDGCHC	4 cut(s)	319, 506, 515, 594
SfaNI	GCATC	4 cut(s)	17, 462, 640, 933
SfcI	CTRYAG	1 cut(s)	742
SinI	GGWCC	1 cut(s)	550
SmaI	CCCGGG	1 cut(s)	614
SmiMI	CAYNNNNRTG	3 cut(s)	322, 545, 643
Sse9I	AATT	4 cut(s)	277, 361, 892, 969
SsiI	CCGC	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	3 cut(s)	238, 611, 612
StyI	CCWWGG	2 cut(s)	546, 923
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	2 cut(s)	474, 800
TaqI	TCGA	1 cut(s)	214
TasI	AATT	4 cut(s)	277, 361, 892, 969
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	4 cut(s)	219, 253, 272, 353
TscAI	CASTG	4 cut(s)	94, 420, 515, 780
TseFI	GTSAC	2 cut(s)	83, 418
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	2 cut(s)	83, 418
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	159
TspMI	CCCGGG	1 cut(s)	612
TspRI	CASTG	4 cut(s)	94, 420, 515, 780
Van91I	CCANNNNNTGG	1 cut(s)	820
VneI	GTGCAC	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	3 cut(s)	361, 892, 969
XcmI	CCANNNNNNNNNTGG	1 cut(s)	821
XmaI	CCCGGG	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.