Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001572.1

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Reverse (-)

120424 .. 123220

Gene Structure 2797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001572.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggacaatgttaaccttttgacgagtacagatgcagatggtggactgccggcttctcctcctattagatttaacaaagaaggaatactgttagctgtctcaacaaatgacaatgatattaaaattctggcaaattcatatggaattaggttgctgagaacagtggatacttccagagctgcttctgtggctgttgtgaaggcctcagcaataggaacatttggatcgtctaacattactgttggaacaggcattggagatcgagtgactccaatgccagccatggttggactgatcaacggcatcctttcgctacaaaatgttgaatcaactagcataaagcacaacagaagagcatccttggagatccggtttctttcgcagaagaaagcagagaattcagtgaaggtacataccattgtgggtatttcaatccgagtggctgctcttgaccttgataatgaagacactacagaagaagagagtgagaaagagaaggtagagcctgaaatttttgttgtgaatgaagaaaagagaacaggagaagatgagaagaagggtgagaggtctggtgcttcgtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

194

Amino Acids

20.77

Weight (kDa)

5.2

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	232, 361
AcsI	RAATTY	4 cut(s)	123, 133, 397, 510
AfaI	GTAC	2 cut(s)	28, 411
AgsI	TTSAA	2 cut(s)	326, 432
AluBI	AGCT	2 cut(s)	95, 179
AluI	AGCT	2 cut(s)	95, 179
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	232, 361
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	179, 443
ApoI	RAATTY	4 cut(s)	123, 133, 397, 510
AsuHPI	GGTGA	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	166, 430
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	316
BciVI	GTATCC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	160
BisI	GCNGC	2 cut(s)	180, 444
BlsI	GCNGC	2 cut(s)	181, 445
BmsI	GCATC	3 cut(s)	22, 312, 365
BpiI	GAAGAC	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	282, 360
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 356, 386
Bse118I	RCCGGY	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	282, 360
BseGI	GGATG	2 cut(s)	303, 356
BseMII	CTCAG	2 cut(s)	146, 219
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	166, 430
BshFI	GGCC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	50, 370
BsmAI	GTCTC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	224, 259, 294, 366
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	147, 218
BspPI	GGATC	2 cut(s)	232, 361
BspQI	GCTCTTC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	282, 360
BssMI	GATC	4 cut(s)	224, 259, 294, 366
BssT1I	CCWWGG	2 cut(s)	282, 360
Bst4CI	ACNGT	3 cut(s)	90, 163, 241
Bst6I	CTCTTC	2 cut(s)	346, 474
BstC8I	GCNNGC	2 cut(s)	51, 279
BstDEI	CTNAG	2 cut(s)	155, 205
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	303, 356
BstKTI	GATC	4 cut(s)	227, 262, 297, 369
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	4 cut(s)	224, 259, 294, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	166, 430
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	303, 356
BtsIMutI	CAGTG	2 cut(s)	168, 408
Cac8I	GCNNGC	2 cut(s)	51, 279
Cfr10I	RCCGGY	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	27, 410
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	8 cut(s)	53, 95, 179, 191, 203, 281, 443, 505
CviKI_1	RGCY	8 cut(s)	53, 95, 179, 191, 203, 281, 443, 505
CviQI	GTAC	2 cut(s)	27, 410
DdeI	CTNAG	2 cut(s)	155, 205
DpnI	GATC	4 cut(s)	226, 261, 296, 368
DpnII	GATC	4 cut(s)	224, 259, 294, 366
Eam1104I	CTCTTC	2 cut(s)	346, 474
EarI	CTCTTC	2 cut(s)	346, 474
Eco130I	CCWWGG	2 cut(s)	282, 360
Eco147I	AGGCCT	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	282, 360
ErhI	CCWWGG	2 cut(s)	282, 360
FaeI	CATG	1 cut(s)	286
FaiI	YATR	5 cut(s)	139, 141, 284, 338, 414
FatI	CATG	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	180, 444
FokI	GGATG	2 cut(s)	290, 343
Fsp4HI	GCNGC	2 cut(s)	180, 444
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	2 cut(s)	180, 444
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	50, 370
Hin1II	CATG	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	268, 326
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	50, 370
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	13, 44
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	2 cut(s)	174, 449
Hpy8I	GTNNAC	2 cut(s)	13, 44
HpyAV	CCTTC	5 cut(s)	74, 193, 400, 490, 550
HpyCH4III	ACNGT	3 cut(s)	90, 163, 241
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	155, 205
Hsp92II	CATG	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	294
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	224, 259, 294, 366
LguI	GCTCTTC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	63, 113, 187, 234, 291, 383, 519, 525, 555
Lsp1109I	GCAGC	2 cut(s)	166, 430
LweI	GCATC	3 cut(s)	22, 312, 365
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	4 cut(s)	226, 261, 296, 368
MboI	GATC	4 cut(s)	224, 259, 294, 366
MboII	GAAGA	8 cut(s)	363, 397, 476, 488, 491, 539, 557, 565
MflI	RGATCY	1 cut(s)	366
MluCI	AATT	5 cut(s)	123, 133, 144, 397, 510
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	2 cut(s)	223, 268
MnlI	CCTC	3 cut(s)	69, 214, 558
MroNI	GCCGGC	1 cut(s)	49
MseI	TTAA	3 cut(s)	12, 72, 120
MspI	CCGG	2 cut(s)	50, 370
MwoI	GCNNNNNNNGC	1 cut(s)	188
NaeI	GCCGGC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	4 cut(s)	224, 259, 294, 366
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	346
PdiI	GCCGGC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	181, 445
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	151, 183
PsuI	RGATCY	1 cut(s)	366
RsaI	GTAC	2 cut(s)	28, 411
RsaNI	GTAC	2 cut(s)	27, 410
SapI	GCTCTTC	1 cut(s)	346
SaqAI	TTAA	3 cut(s)	12, 72, 120
SatI	GCNGC	2 cut(s)	180, 444
Sau3AI	GATC	4 cut(s)	224, 259, 294, 366
SchI	GAGTC	1 cut(s)	262
SetI	ASST	8 cut(s)	18, 97, 152, 181, 411, 456, 501, 569
SfaNI	GCATC	3 cut(s)	22, 312, 365
SfcI	CTRYAG	1 cut(s)	471
Sse9I	AATT	5 cut(s)	123, 133, 144, 397, 510
SseBI	AGGCCT	1 cut(s)	203
SspMI	CTAG	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	282, 360
TaaI	ACNGT	3 cut(s)	90, 163, 241
TaqI	TCGA	1 cut(s)	262
TasI	AATT	5 cut(s)	123, 133, 144, 397, 510
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	12, 72, 120
Tru9I	TTAA	3 cut(s)	12, 72, 120
TscAI	CASTG	2 cut(s)	168, 408
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	179, 443
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	126, 477, 540
TspRI	CASTG	2 cut(s)	168, 408
XapI	RAATTY	4 cut(s)	123, 133, 397, 510
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.