Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Reverse (-)

24010355 .. 24011027

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0230300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTCATAGCAAGAAGAGCTATTGCCTCTATAGCTGCCGGTACTCAACCCTCCACCACAGTCTCTGAGGCTTACCTCTCCACTGCTTTTGAACGTGCAGAGGGAGCTAATGAAGTGGCGGAGGCAAGAGAAAGCCGGAGTGATGTTAGTATGGAAACAGTTATACCCCATACTGATCCGGTGAAGGAAGGCTTGTTTGAAGCCAAGCATCAAGACATGGCCATGACCACTGACGCCGCAAGAGAAGGACCGGTGAAAGCGGCGGAGATGGAAGACACGGTGGGAGACACTGCGAAGCGCACTATGGTGGAGGGAGCGAAACAGGTCAAAGAGGCCGTATTGGGAGAAGATGAAGAAGAAGGGCCGAGCAAGAAGAGCTTGAGTGATGATGATACTGATAGTATTGAGGATCTGAGGAGGAGGGCAGGAGGGTATGATAAGAGGAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

150

Amino Acids

16.18

Weight (kDa)

4.65

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	119, 237, 260, 263
AclWI	GGATC	2 cut(s)	170, 417
AcoI	YGGCCR	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	92, 200
AleI	CACNNNNGTG	1 cut(s)	305
AluBI	AGCT	4 cut(s)	20, 35, 107, 378
AluI	AGCT	4 cut(s)	20, 35, 107, 378
Alw26I	GTCTC	2 cut(s)	67, 279
AlwI	GGATC	2 cut(s)	170, 417
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	3 cut(s)	219, 333, 362
ApeKI	GCWGC	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	248, 362
AsuHPI	GGTGA	2 cut(s)	193, 265
AvaII	GGWCC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	1 cut(s)	320
BcoDI	GTCTC	2 cut(s)	67, 279
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	3 cut(s)	36, 237, 261
BlsI	GCNGC	3 cut(s)	37, 238, 262
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	248, 362
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	234
BsaWI	WCCGGW	2 cut(s)	178, 250
Bse118I	RCCGGY	2 cut(s)	38, 250
BseMII	CTCAG	2 cut(s)	57, 404
BseRI	GAGGAG	2 cut(s)	430, 433
BseXI	GCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	221, 335, 364
BshTI	ACCGGT	1 cut(s)	250
BsiSI	CCGG	4 cut(s)	39, 136, 179, 251
BsmAI	GTCTC	2 cut(s)	67, 279
BsnI	GGCC	3 cut(s)	221, 335, 364
Bsp143I	GATC	2 cut(s)	175, 409
BspACI	CCGC	4 cut(s)	119, 237, 260, 263
BspANI	GGCC	3 cut(s)	221, 335, 364
BspCNI	CTCAG	2 cut(s)	58, 405
BspPI	GGATC	2 cut(s)	170, 417
BspQI	GCTCTTC	2 cut(s)	10, 368
BsrFI	RCCGGY	2 cut(s)	38, 250
BssAI	RCCGGY	2 cut(s)	38, 250
BssMI	GATC	2 cut(s)	175, 409
BssNI	GRCGYC	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	61, 160, 280
Bst6I	CTCTTC	2 cut(s)	10, 368
BstACI	GRCGYC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	66, 413
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	2 cut(s)	178, 412
BstMAI	GTCTC	2 cut(s)	67, 279
BstMBI	GATC	2 cut(s)	175, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 32, 104, 375
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	3 cut(s)	221, 335, 364
BtsI	GCAGTG	2 cut(s)	81, 288
BtsIMutI	CAGTG	3 cut(s)	81, 228, 288
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	1 cut(s)	300
Cfr10I	RCCGGY	2 cut(s)	38, 250
Cfr13I	GGNCC	2 cut(s)	248, 362
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	42
CspAI	ACCGGT	1 cut(s)	250
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	2 cut(s)	217, 223
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	2 cut(s)	66, 413
DpnI	GATC	2 cut(s)	177, 411
DpnII	GATC	2 cut(s)	175, 409
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	10, 368
EarI	CTCTTC	2 cut(s)	10, 368
EciI	GGCGGA	2 cut(s)	134, 278
Eco47I	GGWCC	1 cut(s)	248
FaeI	CATG	2 cut(s)	220, 226
FaiI	YATR	9 cut(s)	8, 32, 152, 164, 171, 218, 224, 305, 435
FalI	AAGNNNNNCTT	4 cut(s)	176, 208, 362, 394
FatI	CATG	2 cut(s)	216, 222
Fnu4HI	GCNGC	3 cut(s)	36, 237, 261
Fsp4HI	GCNGC	3 cut(s)	36, 237, 261
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	3 cut(s)	36, 237, 261
HaeIII	GGCC	3 cut(s)	221, 335, 364
HapII	CCGG	4 cut(s)	39, 136, 179, 251
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	220, 226
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HpaII	CCGG	4 cut(s)	39, 136, 179, 251
HphI	GGTGA	2 cut(s)	193, 265
Hpy188I	TCNGA	2 cut(s)	67, 414
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	4 cut(s)	178, 182, 239, 353
HpyCH4III	ACNGT	3 cut(s)	61, 160, 280
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 32, 104, 375
HpyF3I	CTNAG	2 cut(s)	66, 413
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	220, 226
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	175, 409
LguI	GCTCTTC	2 cut(s)	10, 368
LmnI	GCTCC	2 cut(s)	104, 314
LpnPI	CCDG	6 cut(s)	52, 149, 192, 264, 308, 411
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	217
MaeII	ACGT	1 cut(s)	94
MalI	GATC	2 cut(s)	177, 411
MboI	GATC	2 cut(s)	175, 409
MboII	GAAGA	6 cut(s)	27, 284, 359, 365, 368, 385
MflI	RGATCY	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
Mox20I	TGGCCA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	221
MslI	CAYNNNNRTG	2 cut(s)	221, 305
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	4 cut(s)	39, 136, 179, 251
MwoI	GCNNNNNNNGC	4 cut(s)	17, 32, 104, 375
NdeII	GATC	2 cut(s)	175, 409
NlaIII	CATG	2 cut(s)	220, 226
NmeAIII	GCCGAG	1 cut(s)	390
OliI	CACNNNNGTG	1 cut(s)	305
PciSI	GCTCTTC	2 cut(s)	10, 368
PinAI	ACCGGT	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	37, 238, 262
PspPI	GGNCC	2 cut(s)	248, 362
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	2 cut(s)	221, 305
SapI	GCTCTTC	2 cut(s)	10, 368
SatI	GCNGC	3 cut(s)	36, 237, 261
Sau3AI	GATC	2 cut(s)	175, 409
Sau96I	GGNCC	2 cut(s)	248, 362
SetI	ASST	7 cut(s)	22, 37, 78, 97, 109, 327, 380
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	221, 305
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
SsiI	CCGC	4 cut(s)	119, 237, 260, 263
TaaI	ACNGT	3 cut(s)	61, 160, 280
TaiI	ACGT	1 cut(s)	97
TauI	GCSGC	2 cut(s)	239, 263
TscAI	CASTG	3 cut(s)	88, 235, 295
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	126, 366
TspRI	CASTG	3 cut(s)	88, 235, 295
VpaK11BI	GGWCC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.