Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Reverse (-)

80718747 .. 80719256

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG519800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTTAAATTCTGGGACATGGACAATGTTAACCTTTTGACAAGTACAGATGCAGATGGTGGACTGCTGGCTTCTCCTCCTATTAGATTTAACAAAGAAGAAATACTGTTAGCTGTCTCAACAAATGACAATGGTATTAAAATTCTAGCAAATTCAGATGGAATTAGGTTACTGAGAACAGTGGATGCTTCCAGAGCTGCTTCTGTGGCTGTTGTGAAGGTCTCAGCAGTAGGAACATTTGGATTGTCTAACATTACTGTTGGAACAGGCATTGGAGATCGAGCAGCTCCAATGCCAGGCATGGTTGGACTGGTGAGTGTCATGATTATCTCTCATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

113

Amino Acids

11.7

Weight (kDa)

5.62

Isoelectric Point (pI)

24.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	8, 141, 151
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	3 cut(s)	113, 197, 287
AluI	AGCT	3 cut(s)	113, 197, 287
Alw26I	GTCTC	2 cut(s)	121, 226
ApeKI	GCWGC	2 cut(s)	197, 284
ApoI	RAATTY	3 cut(s)	8, 141, 151
AsuHPI	GGTGA	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	184, 296
BccI	CCATC	2 cut(s)	50, 152
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	121, 226
BfaI	CTAG	1 cut(s)	146
BisI	GCNGC	2 cut(s)	198, 285
BlsI	GCNGC	2 cut(s)	199, 286
Bme1390I	CCNGG	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	40, 175
BsaI	GGTCTC	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	2 cut(s)	164, 237
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	184, 296
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	121, 226
BsmFI	GGGAC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	165, 236
BspHI	TCATGA	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	3 cut(s)	108, 181, 259
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	173, 223
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	2 cut(s)	121, 226
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 206
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	184, 296
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	19, 301, 322, 335
CviJI	RGCY	5 cut(s)	71, 113, 197, 209, 287
CviKI_1	RGCY	5 cut(s)	71, 113, 197, 209, 287
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	173, 223
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	4 cut(s)	22, 304, 325, 338
FaiI	YATR	4 cut(s)	20, 302, 323, 336
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	4 cut(s)	18, 300, 321, 334
Fnu4HI	GCNGC	2 cut(s)	198, 285
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	198, 285
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	2 cut(s)	198, 285
Hin1II	CATG	4 cut(s)	22, 304, 325, 338
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HpaI	GTTAAC	1 cut(s)	31
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	31, 62
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	192, 322
Hpy8I	GTNNAC	2 cut(s)	31, 62
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	3 cut(s)	108, 181, 259
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 206
HpyF3I	CTNAG	2 cut(s)	173, 223
Hsp92II	CATG	4 cut(s)	22, 304, 325, 338
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	6 cut(s)	53, 205, 252, 282, 296, 309
Lsp1109I	GCAGC	2 cut(s)	184, 296
LweI	GCATC	2 cut(s)	40, 175
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	1 cut(s)	110
MluCI	AATT	4 cut(s)	8, 141, 151, 162
MmeI	TCCRAC	2 cut(s)	241, 286
MnlI	CCTC	1 cut(s)	87
MseI	TTAA	4 cut(s)	6, 30, 90, 138
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	194, 206
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	4 cut(s)	22, 304, 325, 338
PagI	TCATGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	199, 286
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	6, 30, 90, 138
SatI	GCNGC	2 cut(s)	198, 285
Sau3AI	GATC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	6 cut(s)	36, 115, 170, 199, 222, 289
SfaNI	GCATC	2 cut(s)	40, 175
Sse9I	AATT	4 cut(s)	8, 141, 151, 162
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	3 cut(s)	108, 181, 259
TaqI	TCGA	1 cut(s)	280
TasI	AATT	4 cut(s)	8, 141, 151, 162
TatI	WGTACW	1 cut(s)	44
Tru1I	TTAA	4 cut(s)	6, 30, 90, 138
Tru9I	TTAA	4 cut(s)	6, 30, 90, 138
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	2 cut(s)	197, 284
TspRI	CASTG	1 cut(s)	186
XapI	RAATTY	3 cut(s)	8, 141, 151
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.