Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Forward (+)

5424586 .. 5437459

Gene Structure 12874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGACAATGTTAACCTTTTGACGAGTACAGATGCAGATGGTGGACTGCCGGCTTCTCCTCCTATTAGATTTAACAAAGAAGGAATACTGTTAGCTGTCTCAACAAATGACAAAAGTATTAAAATTCTGGTAAATTCATATGGAATTAGGTTGCTGAGAACAGTGGATGCTTCCAGAGCTGCTTCTGTGGCTGTTGTGAAGGCCTCAGCAATAGGAACATTTGGATCGTCTAACATTACTGTTGGAACAGGCATTGGAGATCGAGTGACTCCAATACCAGCCATGGTTGGACTGTTTTGCAGTGTTCTAAGGTTGAATTGCTCTGACAAGCCTTGGAGATCCGGTTTCTTTCACAGAAGGGGATCAACAAAAGGGACTAAAAAAAGGCACTGTAGTCAACAGAAGCCTACAGTTCAGAGACAAAGTTGCCTAAACTGCGTTGTCATTCGATTGTTTGCAATAGAAGGGCGTGGATCAGCAGAGGAAGGCGATACAGCTATTACATCGTTGGGATCATCACGGGGAGAAGGGAAGAGCTTGGTTTGGTTAGAAGCTGAAATTTTTCCGTGCGGTCCAACTCTTGGTCTCATTGTGTCCGGTAAGGATTTGATCCAATGCCCAAACGGAGAAAAAGTAAGAGAGATTTACTTTTGCAAAATGCTGAAAGTGTTGATAAACGCAAACGAAGAAAGACTACATCTGCTGAAACAAGCTGCAATTCTGGTCCGAGTATGTCCAACATTCAAGAAGTTGAAAATGTTGTTTTACATGAACACAGCATTGGACAAGCGTCGTATCAAAGAAACAAGCATGGGACCCTTAGCGTTCTATTTGGACTTCATCCCAAATTTTGGACGGCTAGGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

289

Amino Acids

31.5

Weight (kDa)

9.73

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	581, 851
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	6 cut(s)	232, 333, 370, 481, 520, 604
AcsI	RAATTY	4 cut(s)	123, 133, 558, 847
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	2 cut(s)	581, 851
AgsI	TTSAA	3 cut(s)	316, 745, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	764, 796
AluBI	AGCT	6 cut(s)	95, 179, 497, 537, 554, 713
AluI	AGCT	6 cut(s)	95, 179, 497, 537, 554, 713
Alw26I	GTCTC	3 cut(s)	103, 412, 590
AlwI	GGATC	6 cut(s)	232, 333, 370, 481, 520, 604
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	179, 713
ApoI	RAATTY	4 cut(s)	123, 133, 558, 847
Asp700I	GAANNNNTTC	1 cut(s)	561
AspS9I	GGNCC	3 cut(s)	572, 724, 815
AvaII	GGWCC	3 cut(s)	572, 724, 815
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	166, 700
BccI	CCATC	1 cut(s)	32
BcoDI	GTCTC	3 cut(s)	103, 412, 590
BfaI	CTAG	1 cut(s)	860
BfmI	CTRYAG	2 cut(s)	391, 408
BisI	GCNGC	2 cut(s)	180, 714
BlsI	GCNGC	2 cut(s)	181, 715
Bme18I	GGWCC	3 cut(s)	572, 724, 815
BmgT120I	GGNCC	3 cut(s)	572, 724, 815
BmiI	GGNNCC	2 cut(s)	816, 817
BmsI	GCATC	2 cut(s)	22, 157
BoxI	GACNNNNGTC	1 cut(s)	789
Bpu10I	CCTNAGC	2 cut(s)	205, 820
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	282, 332
BsaWI	WCCGGW	2 cut(s)	341, 596
BsaXI	ACNNNNNCTCC	6 cut(s)	249, 279, 328, 358, 618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	581, 851
Bse118I	RCCGGY	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	282, 332
BseGI	GGATG	2 cut(s)	172, 840
BseLI	CCNNNNNNNGG	2 cut(s)	581, 851
BseMII	CTCAG	2 cut(s)	146, 219
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	166, 700
BshFI	GGCC	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	50, 342, 597
BslFI	GGGAC	2 cut(s)	388, 828
BslI	CCNNNNNNNGG	2 cut(s)	581, 851
BsmAI	GTCTC	3 cut(s)	103, 412, 590
BsmFI	GGGAC	2 cut(s)	388, 828
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	590
Bsp143I	GATC	8 cut(s)	224, 259, 338, 362, 473, 512, 609, 863
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	147, 218
BspLI	GGNNCC	2 cut(s)	816, 817
BspPI	GGATC	6 cut(s)	232, 333, 370, 481, 520, 604
BspQI	GCTCTTC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	590
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	282, 332
BssMI	GATC	8 cut(s)	224, 259, 338, 362, 473, 512, 609, 863
BssT1I	CCWWGG	2 cut(s)	282, 332
Bst4CI	ACNGT	6 cut(s)	90, 163, 241, 294, 392, 412
Bst6I	CTCTTC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	4 cut(s)	155, 205, 308, 820
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	172, 840
BstKTI	GATC	8 cut(s)	227, 262, 341, 365, 476, 515, 612, 866
BstMAI	GTCTC	3 cut(s)	103, 412, 590
BstMBI	GATC	8 cut(s)	224, 259, 338, 362, 473, 512, 609, 863
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 188, 435
BstPAI	GACNNNNGTC	1 cut(s)	789
BstSFI	CTRYAG	2 cut(s)	391, 408
BstV1I	GCAGC	2 cut(s)	166, 700
BstX2I	RGATCY	2 cut(s)	338, 863
BstYI	RGATCY	2 cut(s)	338, 863
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	172, 840
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	3 cut(s)	168, 307, 388
Cac8I	GCNNGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	3 cut(s)	572, 724, 815
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	3 cut(s)	283, 769, 811
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	4 cut(s)	155, 205, 308, 820
DpnI	GATC	8 cut(s)	226, 261, 340, 364, 475, 514, 611, 865
DpnII	GATC	8 cut(s)	224, 259, 338, 362, 473, 512, 609, 863
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco130I	CCWWGG	2 cut(s)	282, 332
Eco147I	AGGCCT	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	590
Eco47I	GGWCC	3 cut(s)	572, 724, 815
EcoO109I	RGGNCCY	1 cut(s)	815
EcoT14I	CCWWGG	2 cut(s)	282, 332
ErhI	CCWWGG	2 cut(s)	282, 332
FaeI	CATG	3 cut(s)	286, 772, 814
FaiI	YATR	6 cut(s)	139, 141, 284, 733, 770, 812
FaqI	GGGAC	2 cut(s)	388, 828
FatI	CATG	3 cut(s)	282, 768, 810
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	180, 714
FokI	GGATG	2 cut(s)	179, 827
Fsp4HI	GCNGC	2 cut(s)	180, 714
FspBI	CTAG	1 cut(s)	860
GluI	GCNGC	2 cut(s)	180, 714
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	3 cut(s)	50, 342, 597
HgaI	GACGC	1 cut(s)	779
Hin1II	CATG	3 cut(s)	286, 772, 814
HincII	GTYRAC	2 cut(s)	13, 398
HindII	GTYRAC	2 cut(s)	13, 398
HinfI	GANTC	1 cut(s)	268
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	3 cut(s)	50, 342, 597
Hpy166II	GTNNAC	3 cut(s)	13, 44, 398
Hpy188I	TCNGA	3 cut(s)	325, 417, 728
Hpy188III	TCNNGA	3 cut(s)	174, 745, 867
Hpy8I	GTNNAC	3 cut(s)	13, 44, 398
Hpy99I	CGWCG	1 cut(s)	795
HpyAV	CCTTC	6 cut(s)	74, 193, 351, 458, 479, 521
HpyCH4III	ACNGT	6 cut(s)	90, 163, 241, 294, 392, 412
HpyCH4V	TGCA	5 cut(s)	35, 300, 458, 654, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 188, 435
HpyF3I	CTNAG	4 cut(s)	155, 205, 308, 820
Hsp92II	CATG	3 cut(s)	286, 772, 814
KflI	GGGWCCC	1 cut(s)	815
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	8 cut(s)	224, 259, 338, 362, 473, 512, 609, 863
LguI	GCTCTTC	1 cut(s)	527
LpnPI	CCDG	8 cut(s)	63, 113, 187, 234, 291, 355, 610, 707
Lsp1109I	GCAGC	2 cut(s)	166, 700
LweI	GCATC	2 cut(s)	22, 157
MaeI	CTAG	1 cut(s)	860
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	8 cut(s)	226, 261, 340, 364, 475, 514, 611, 865
MboI	GATC	8 cut(s)	224, 259, 338, 362, 473, 512, 609, 863
MboII	GAAGA	2 cut(s)	544, 698
MflI	RGATCY	2 cut(s)	338, 863
MluCI	AATT	7 cut(s)	123, 133, 144, 316, 558, 717, 847
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	4 cut(s)	223, 268, 599, 761
MnlI	CCTC	3 cut(s)	69, 214, 475
MroNI	GCCGGC	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	561
MseI	TTAA	3 cut(s)	12, 72, 120
MspI	CCGG	3 cut(s)	50, 342, 597
MwoI	GCNNNNNNNGC	3 cut(s)	176, 188, 435
NaeI	GCCGGC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	8 cut(s)	224, 259, 338, 362, 473, 512, 609, 863
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	3 cut(s)	286, 772, 814
NlaIV	GGNNCC	2 cut(s)	816, 817
NmuCI	GTSAC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	527
PdiI	GCCGGC	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	561
PflMI	CCANNNNNTGG	2 cut(s)	581, 851
PkrI	GCNGC	2 cut(s)	181, 715
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	815
PshAI	GACNNNNGTC	1 cut(s)	789
Psp5II	RGGWCCY	1 cut(s)	815
PspN4I	GGNNCC	2 cut(s)	816, 817
PspPI	GGNCC	3 cut(s)	572, 724, 815
PspPPI	RGGWCCY	1 cut(s)	815
PsuI	RGATCY	2 cut(s)	338, 863
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	3 cut(s)	12, 72, 120
SatI	GCNGC	2 cut(s)	180, 714
Sau3AI	GATC	8 cut(s)	224, 259, 338, 362, 473, 512, 609, 863
Sau96I	GGNCC	3 cut(s)	572, 724, 815
SchI	GAGTC	1 cut(s)	262
SetI	ASST	9 cut(s)	18, 97, 152, 181, 314, 499, 539, 556, 715
SfaNI	GCATC	2 cut(s)	22, 157
SfcI	CTRYAG	2 cut(s)	391, 408
SinI	GGWCC	3 cut(s)	572, 724, 815
Sse9I	AATT	7 cut(s)	123, 133, 144, 316, 558, 717, 847
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	1 cut(s)	860
StuI	AGGCCT	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	282, 332
TaaI	ACNGT	6 cut(s)	90, 163, 241, 294, 392, 412
TaqI	TCGA	2 cut(s)	262, 448
TasI	AATT	7 cut(s)	123, 133, 144, 316, 558, 717, 847
TatI	WGTACW	1 cut(s)	26
Tru1I	TTAA	3 cut(s)	12, 72, 120
Tru9I	TTAA	3 cut(s)	12, 72, 120
TscAI	CASTG	3 cut(s)	168, 307, 395
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	179, 713
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	126, 785, 829
TspGWI	ACGGA	2 cut(s)	555, 639
TspRI	CASTG	3 cut(s)	168, 307, 395
Van91I	CCANNNNNTGG	2 cut(s)	581, 851
VpaK11BI	GGWCC	3 cut(s)	572, 724, 815
XapI	RAATTY	4 cut(s)	123, 133, 558, 847
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.