Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Forward (+)

12204057 .. 12205640

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG128300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCAATGGAAGCTGGTGTTCCAAAAGCTATATGTATCGTTGGAGATGCATATTATGAAGAGCAAGTGGAAACAGTGATTCACCAAATGCTTCAGCAGTTCCATGTACTTGGAGAAGGGCTCTGTAGAAATCTTATGAACTGGAGCCAAGGGGAAGAGAAGCATTTGGGTTTAGGTTTTGATCAGGCTTCTCCTTCTATTAGATTTAACAAAGAAGGAATACTGTTAGCTGTCTCAACAAATGACAATGGTATTAAAATCCTAGCAAATTCAGATGGAATTAGGTTGCTGAGAACAATGGATGCTTCCAGAGCTGCTTCTGTGGCTGTTGTGAAGGTAAAGTTTCATTTTGGCATATCTTTAGATTTGTTAGCTTTCTTTGGTGATATTCACAATGTGCGTCTGCTGGGTGAGTGTCATGATTCTCTCTCATGGGTGACTCAAATCCCAGAAGAAATCCATATAAATCAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

5.4

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	397
AfaI	GTAC	1 cut(s)	108
AluBI	AGCT	5 cut(s)	14, 29, 230, 314, 374
AluI	AGCT	5 cut(s)	14, 29, 230, 314, 374
Alw26I	GTCTC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	268
AsuHPI	GGTGA	4 cut(s)	74, 395, 422, 448
BanII	GRGCYC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	269
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	124
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	146
BmsI	GCATC	2 cut(s)	37, 292
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	301
BseYI	CCCAGC	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	76, 225
Bst6I	CTCTTC	2 cut(s)	54, 150
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 311, 323
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	81
CciI	TCATGA	1 cut(s)	418
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	3 cut(s)	104, 419, 432
CviJI	RGCY	9 cut(s)	14, 29, 121, 147, 188, 230, 314, 326, 374
CviKI_1	RGCY	9 cut(s)	14, 29, 121, 147, 188, 230, 314, 326, 374
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DraIII	CACNNNGTG	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	54, 150
EarI	CTCTTC	2 cut(s)	54, 150
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	3 cut(s)	107, 422, 435
FatI	CATG	3 cut(s)	103, 418, 431
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	315
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	163
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	3 cut(s)	107, 422, 435
HinfI	GANTC	3 cut(s)	79, 422, 439
HphI	GGTGA	4 cut(s)	74, 395, 422, 448
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	309, 419
HpyAV	CCTTC	4 cut(s)	110, 204, 209, 328
HpyCH4III	ACNGT	2 cut(s)	76, 225
HpyCH4V	TGCA	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 311, 323
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	107, 422, 435
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	5 cut(s)	127, 170, 322, 392, 462
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	2 cut(s)	37, 292
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	71, 167, 464
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	268, 279
MlyI	GAGTC	1 cut(s)	433
MmeI	TCCRAC	1 cut(s)	22
Mph1103I	ATGCAT	1 cut(s)	52
MseI	TTAA	2 cut(s)	207, 255
MwoI	GCNNNNNNNGC	3 cut(s)	11, 311, 323
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	3 cut(s)	107, 422, 435
NlaIV	GGNNCC	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	52
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	79, 422
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	146
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	207, 255
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	433
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	8 cut(s)	16, 31, 178, 232, 287, 316, 339, 376
SfaNI	GCATC	2 cut(s)	37, 292
SfcI	CTRYAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	268, 279
SspMI	CTAG	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	76, 225
TasI	AATT	2 cut(s)	268, 279
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	79, 422
Tru1I	TTAA	2 cut(s)	207, 255
Tru9I	TTAA	2 cut(s)	207, 255
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	72, 152, 335
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	268
XspI	CTAG	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.