Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Forward (+)

11914409 .. 11917847

Gene Structure 3439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG105300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGACAATGTTAACCTTTTGACGAGTACAGATGCAGATGGTGGACTGCCGGCTTCTCCTCCTATTAGATTTAACAAAGAAGGAATACTGTTAGCTGTCTCAACAAATGACAATGGTATTAAAATTCTGGCAAATTCATATGGAATTAGGTTGCTGAGAACAGTGGATGCTTCCAGAGCTGCTTCTGTGGCTGTCGTGAAGATAAAATTTCATTTTGGCTTATCTTCAGATTCATTAGCTTTCTTTGGTGGTATTCACAATGCCTCAGCAATAGGAACATTTGGATCGTCTAACATTACTGTTGGAACAGGCATTGGAGATCGAGTGACTCCAATGCCAGCCATGGTTGGACTGTGTTCTAAGTTGAATTGCTCTAACAAGTCTTGGAGATCCGGTTTCTTTCGCAGAAGAGCCAAACATTGGCAAGCAAGGAATGTTCCCATCACAGATATTGAGCCCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

154

Amino Acids

16.4

Weight (kDa)

10.02

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	420
AclWI	GGATC	2 cut(s)	292, 384
AcsI	RAATTY	3 cut(s)	123, 133, 206
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	367
AluBI	AGCT	3 cut(s)	95, 179, 239
AluI	AGCT	3 cut(s)	95, 179, 239
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	292, 384
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	3 cut(s)	123, 133, 206
BanII	GRGCYC	1 cut(s)	459
BbvCI	CCTCAGC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	32, 449
BcoDI	GTCTC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmsI	GCATC	2 cut(s)	22, 157
Bpu10I	CCTNAGC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	392
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse118I	RCCGGY	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	146, 279
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	50, 393
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	3 cut(s)	284, 319, 389
Bsp19I	CCATGG	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	147, 278
BspPI	GGATC	2 cut(s)	292, 384
BspQI	GCTCTTC	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	3 cut(s)	284, 319, 389
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	90, 163, 301, 354
Bst6I	CTCTTC	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	51, 339, 426
BstDEI	CTNAG	3 cut(s)	155, 265, 360
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	3 cut(s)	287, 322, 392
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	3 cut(s)	284, 319, 389
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 188
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	3 cut(s)	51, 339, 426
Cfr10I	RCCGGY	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	9 cut(s)	53, 95, 179, 191, 219, 239, 341, 413, 457
CviKI_1	RGCY	9 cut(s)	53, 95, 179, 191, 219, 239, 341, 413, 457
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	3 cut(s)	155, 265, 360
DpnI	GATC	3 cut(s)	286, 321, 391
DpnII	GATC	3 cut(s)	284, 319, 389
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	346
FaiI	YATR	4 cut(s)	139, 141, 344, 463
FatI	CATG	1 cut(s)	342
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
HapII	CCGG	2 cut(s)	50, 393
Hin1II	CATG	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	230, 328
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	50, 393
Hpy166II	GTNNAC	2 cut(s)	13, 44
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	174, 196
Hpy8I	GTNNAC	2 cut(s)	13, 44
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	4 cut(s)	90, 163, 301, 354
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 188
HpyF3I	CTNAG	3 cut(s)	155, 265, 360
Hsp92II	CATG	1 cut(s)	346
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	284, 319, 389
LguI	GCTCTTC	1 cut(s)	403
LpnPI	CCDG	6 cut(s)	63, 113, 187, 294, 351, 406
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	22, 157
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	3 cut(s)	286, 321, 391
MboI	GATC	3 cut(s)	284, 319, 389
MboII	GAAGA	3 cut(s)	211, 216, 420
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	5 cut(s)	123, 133, 144, 206, 367
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	2 cut(s)	283, 328
MnlI	CCTC	2 cut(s)	69, 274
MroNI	GCCGGC	1 cut(s)	49
MseI	TTAA	3 cut(s)	12, 72, 120
MspI	CCGG	2 cut(s)	50, 393
MwoI	GCNNNNNNNGC	2 cut(s)	176, 188
NaeI	GCCGGC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	342
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	3 cut(s)	284, 319, 389
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	403
PdiI	GCCGGC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	403
SaqAI	TTAA	3 cut(s)	12, 72, 120
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	284, 319, 389
SchI	GAGTC	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	459
SetI	ASST	5 cut(s)	18, 97, 152, 181, 241
SfaNI	GCATC	2 cut(s)	22, 157
Sse9I	AATT	5 cut(s)	123, 133, 144, 206, 367
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	4 cut(s)	90, 163, 301, 354
TaqI	TCGA	1 cut(s)	322
TasI	AATT	5 cut(s)	123, 133, 144, 206, 367
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	3 cut(s)	12, 72, 120
Tru9I	TTAA	3 cut(s)	12, 72, 120
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	3 cut(s)	126, 200, 222
TspRI	CASTG	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	420
XapI	RAATTY	3 cut(s)	123, 133, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.