Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Reverse (-)

27984710 .. 27989374

Gene Structure 4665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0254100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATCCTGATCCACTGGGCATTCGCCGACGAAACCCGCACGGTGGTGAAGTCAATGAAATCGGAGCTCCTCAACATGGATCTCAAATCCGTCGGAGCCAAGTCGTTACCCAACCCGGCCACTCTTCGCAAGTCATCTCATCTTCTCGGTCCCAAAGTCCTTCAGTCGGGGCTTTTGAAACTTGGTCAAAGTGATGGACATGGTGAGGTTCCAGCTATAGAGTACTCGCATATCCCTTCATTCTCAGACGACGTCATTTCGGGCACTAAGGATACACAGAAATCAAATTTTGGGTCATCAGATTCCCTTGATAGCTTATTTGGCGACAAAGATGCAAGCAGTGCTCTGCAGGTACCGCCGCCATTTTCTGCCGTCATTCATCTATGTAAACACTGCATGCATCATACAGACGATGGTTCTGGTGCTTGTTTTGAATCAGAACGGACTGAGCTGGGGAAAAGACTCTCCCACTTAGATTCGATTCTGGGTGAATGGGGAGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

168

Amino Acids

18.13

Weight (kDa)

5.79

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	340
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	3 cut(s)	37, 356, 359
AclWI	GGATC	2 cut(s)	4, 87
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	224, 354
AfiI	CCNNNNNNNGG	3 cut(s)	43, 76, 166
AgsI	TTSAA	2 cut(s)	178, 434
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	4 cut(s)	67, 215, 315, 451
AluI	AGCT	4 cut(s)	67, 215, 315, 451
Alw21I	GWGCWC	2 cut(s)	69, 346
AlwI	GGATC	2 cut(s)	4, 87
AoxI	GGCC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
Asp718I	GGTACC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	58, 215, 500
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	69, 346
BccI	CCATC	2 cut(s)	188, 407
BceAI	ACGGC	1 cut(s)	356
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciVI	GTATCC	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	216, 347
BfuAI	ACCTGC	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	4 cut(s)	97, 151, 210, 354
BmrFI	CCNGG	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	322, 409
BmuI	ACTGGG	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 76, 166
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	43, 76, 166
BseMII	CTCAG	2 cut(s)	258, 438
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	266
BseYI	CCCAGC	1 cut(s)	451
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	352
BsiHKAI	GWGCWC	2 cut(s)	69, 346
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	3 cut(s)	43, 76, 166
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	69, 266, 346
Bsp143I	GATC	3 cut(s)	3, 9, 79
BspACI	CCGC	3 cut(s)	37, 356, 359
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	257, 439
BspLI	GGNNCC	4 cut(s)	97, 151, 210, 354
BspMAI	CTGCAG	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	2 cut(s)	4, 87
BspT107I	GGYRCC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	3 cut(s)	3, 9, 79
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	337, 398
BstDEI	CTNAG	4 cut(s)	244, 267, 447, 472
BstKTI	GATC	3 cut(s)	6, 12, 82
BstMBI	GATC	3 cut(s)	3, 9, 79
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 341, 355
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	2 cut(s)	216, 347
BstSLI	GKGCMC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	119
BtsI	GCAGTG	2 cut(s)	346, 391
BtsIMutI	CAGTG	3 cut(s)	13, 346, 391
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	337, 398
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	223, 353
CviAII	CATG	3 cut(s)	76, 200, 397
CviJI	RGCY	7 cut(s)	67, 98, 119, 172, 215, 315, 451
CviKI_1	RGCY	7 cut(s)	67, 98, 119, 172, 215, 315, 451
CviQI	GTAC	2 cut(s)	223, 353
DdeI	CTNAG	4 cut(s)	244, 267, 447, 472
DpnI	GATC	3 cut(s)	5, 11, 81
DpnII	GATC	3 cut(s)	3, 9, 79
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	3 cut(s)	79, 203, 400
FaiI	YATR	7 cut(s)	77, 201, 218, 231, 385, 398, 405
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	3 cut(s)	75, 199, 396
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	359
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	79, 203, 400
HinfI	GANTC	5 cut(s)	302, 434, 462, 476, 481
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	58, 215, 500
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	5 cut(s)	64, 95, 247, 301, 439
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	3 cut(s)	32, 95, 254
HpyAV	CCTTC	2 cut(s)	170, 246
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	335, 349, 396, 400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 341, 355
HpyF3I	CTNAG	4 cut(s)	244, 267, 447, 472
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	79, 203, 400
KpnI	GGTACC	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	3, 9, 79
LmnI	GCTCC	3 cut(s)	64, 72, 95
LpnPI	CCDG	7 cut(s)	20, 129, 225, 335, 405, 437, 470
LweI	GCATC	2 cut(s)	322, 409
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	3 cut(s)	5, 11, 81
MboI	GATC	3 cut(s)	3, 9, 79
MboII	GAAGA	2 cut(s)	116, 134
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	3 cut(s)	69, 266, 346
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	2 cut(s)	80, 199
Mph1103I	ATGCAT	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	321, 341, 355
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	3 cut(s)	3, 9, 79
NlaIII	CATG	3 cut(s)	79, 203, 400
NlaIV	GGNNCC	4 cut(s)	97, 151, 210, 354
NsiI	ATGCAT	1 cut(s)	402
NspI	RCATGY	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	400
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	4 cut(s)	302, 434, 476, 481
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	451
PspN4I	GGNNCC	4 cut(s)	97, 151, 210, 354
PspPI	GGNCC	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	2 cut(s)	224, 354
RsaNI	GTAC	2 cut(s)	223, 353
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	3 cut(s)	3, 9, 79
Sau96I	GGNCC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	3 cut(s)	69, 266, 346
SetI	ASST	8 cut(s)	69, 210, 217, 255, 317, 354, 453, 506
SfaNI	GCATC	2 cut(s)	322, 409
SfcI	CTRYAG	2 cut(s)	216, 347
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	400
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	3 cut(s)	37, 356, 359
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	479
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	286
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	4 cut(s)	302, 434, 476, 481
TscAI	CASTG	3 cut(s)	20, 346, 398
TspDTI	ATGAA	3 cut(s)	71, 228, 368
TspGWI	ACGGA	2 cut(s)	79, 457
TspRI	CASTG	3 cut(s)	20, 346, 398
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	400
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.