Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Forward (+)

21196818 .. 21206175

Gene Structure 9358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG185000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCTTCCAAATTACAATGGCGTGATCATGCCCTTTTGGCTATTCTCATGTGGGACAGATAAAGAAGGGGATCCATACTTGGTGGAATGGAATGAAAGTGAAGGAGCTGTAAAGCGTACCTATCATGGTCTTGATGCAGATGGTGGACTGCCGGCTTCTCCTCCTATTAGATTTAACAAAGAAGGAATACTGTTAGCTGTCTCAACAAATGACAATGGTATTAAAATTCTGGCAAATTCATATGGAATTAGGTTGCTGAGAACAGTGGATGCTTCCAGAGCTGCTTCTGTGGCTGTTGTGAAGGCCTCAGCAATAGGAACATTTGGATCATCTAACATTACTGTTGTAACAGGCATTGGAGATCGAGTGACTCCAATGCCATCCATGGTTGGACTGTTGGACTGTGTTCAAGCCACATCTAGCAATCGAGTTAAAGTTGTTTCTGAAGGAACAATTACTTTTTCATCAGCTACCTGTATTCAAGCCAACATCCATCAAAAACTTCTCACACACCAAGCCAAATTTCTCCACCAGAGTCAAAAAGTTCAAATCAAACCACATCTACCCCAGGTAACAATTGCAACAGCCATAATTTTCTGTCATCGGTTCTACGTTTGCCATTCGCATGCAAAGAATGATAGAAGGACCATTGCAACAGTATGTATGTTTCTCGCCTGTAAAGTTGAAGAAACTCCCCGGCCCCTGAAAGATGTTATCCTTGTCTCCTATGAAATTATTCATAAGAAGGATCCTGCAGCAGCTCAGAGAATCAAGCAAAAGGAGGTATATGAACAGCAGAAGGAATTGATTTTAACTGGTGAGAGGGTTGTTCTTGGAACTCTTGCTTTTGATTTCAATGTACACCATCCGTATAAACCCCTGGTGGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCCCTCGCCCAAGTTGCATGGAATTTTGTTAATGAAGGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

320

Amino Acids

35.2

Weight (kDa)

9.08

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	180 - 285	4.3e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	65, 78, 334, 743, 756
AcsI	RAATTY	5 cut(s)	225, 235, 521, 899, 940
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	2 cut(s)	118, 861
AfiI	CCNNNNNNNGG	1 cut(s)	886
AgsI	TTSAA	6 cut(s)	410, 482, 548, 686, 856, 904
AjnI	CCWGG	2 cut(s)	567, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	6 cut(s)	107, 197, 281, 470, 761, 911
AluI	AGCT	6 cut(s)	107, 197, 281, 470, 761, 911
Alw26I	GTCTC	2 cut(s)	205, 727
AlwI	GGATC	5 cut(s)	65, 78, 334, 743, 756
AoxI	GGCC	2 cut(s)	303, 698
ApeKI	GCWGC	3 cut(s)	281, 755, 758
ApoI	RAATTY	5 cut(s)	225, 235, 521, 899, 940
Asp700I	GAANNNNTTC	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	645, 699
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	1 cut(s)	830
AvaII	GGWCC	1 cut(s)	645
BamHI	GGATCC	2 cut(s)	70, 748
BbvCI	CCTCAGC	1 cut(s)	307
BbvI	GCAGC	3 cut(s)	268, 767, 770
BccI	CCATC	4 cut(s)	134, 388, 501, 873
BciT130I	CCWGG	2 cut(s)	569, 881
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	2 cut(s)	205, 727
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	753
BglI	GCCNNNNNGGC	1 cut(s)	37
BisI	GCNGC	3 cut(s)	282, 756, 759
BlsI	GCNGC	3 cut(s)	283, 757, 760
Bme1390I	CCNGG	3 cut(s)	569, 697, 881
Bme18I	GGWCC	1 cut(s)	645
BmgT120I	GGNCC	2 cut(s)	645, 699
BmiI	GGNNCC	3 cut(s)	72, 701, 750
BmrFI	CCNGG	3 cut(s)	569, 697, 881
BmsI	GCATC	2 cut(s)	124, 259
Bpu10I	CCTNAGC	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	697
BsaJI	CCNNGG	4 cut(s)	384, 567, 695, 879
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	820
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	569, 881
BseDI	CCNNGG	4 cut(s)	384, 567, 695, 879
BseGI	GGATG	4 cut(s)	274, 380, 489, 865
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	3 cut(s)	248, 321, 776
BseNI	ACTGG	1 cut(s)	820
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	268, 767, 770
BshFI	GGCC	2 cut(s)	305, 700
BsiSI	CCGG	2 cut(s)	152, 697
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	2 cut(s)	205, 727
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	305, 700
Bsp1407I	TGTACA	1 cut(s)	859
Bsp143I	GATC	5 cut(s)	24, 70, 326, 361, 748
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	2 cut(s)	305, 700
BspCNI	CTCAG	3 cut(s)	249, 320, 775
BspLI	GGNNCC	3 cut(s)	72, 701, 750
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	5 cut(s)	65, 78, 334, 743, 756
BsrDI	GCAATG	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	859
BsrI	ACTGG	1 cut(s)	820
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	4 cut(s)	384, 567, 695, 879
BssMI	GATC	5 cut(s)	24, 70, 326, 361, 748
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	569, 881
Bst4CI	ACNGT	6 cut(s)	192, 265, 343, 396, 404, 658
BstAUI	TGTACA	1 cut(s)	859
BstC8I	GCNNGC	2 cut(s)	153, 627
BstDEI	CTNAG	3 cut(s)	257, 307, 762
BstDSI	CCRYGG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	884
BstF5I	GGATG	4 cut(s)	274, 380, 489, 865
BstKTI	GATC	5 cut(s)	27, 73, 329, 364, 751
BstMAI	GTCTC	2 cut(s)	205, 727
BstMBI	GATC	5 cut(s)	24, 70, 326, 361, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 278, 290, 917, 932
BstNI	CCWGG	2 cut(s)	569, 881
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	3 cut(s)	567, 695, 879
BstSFI	CTRYAG	1 cut(s)	753
BstV1I	GCAGC	3 cut(s)	268, 767, 770
BstX2I	RGATCY	2 cut(s)	70, 748
BstYI	RGATCY	2 cut(s)	70, 748
BsuRI	GGCC	2 cut(s)	305, 700
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	4 cut(s)	274, 380, 489, 865
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	153, 627
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	645, 699
Csp6I	GTAC	2 cut(s)	117, 860
CviAII	CATG	6 cut(s)	28, 48, 125, 385, 626, 936
CviQI	GTAC	2 cut(s)	117, 860
DdeI	CTNAG	3 cut(s)	257, 307, 762
DpnI	GATC	5 cut(s)	26, 72, 328, 363, 750
DpnII	GATC	5 cut(s)	24, 70, 326, 361, 748
Eco130I	CCWWGG	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	465
EcoNI	CCTNNNNNAGG	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	567, 879
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	6 cut(s)	31, 51, 128, 388, 629, 939
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	6 cut(s)	27, 47, 124, 384, 625, 935
FauNDI	CATATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	282, 756, 759
FokI	GGATG	4 cut(s)	281, 367, 476, 852
Fsp4HI	GCNGC	3 cut(s)	282, 756, 759
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	3 cut(s)	282, 756, 759
HaeIII	GGCC	2 cut(s)	305, 700
HapII	CCGG	2 cut(s)	152, 697
Hin1II	CATG	6 cut(s)	31, 51, 128, 388, 629, 939
HinfI	GANTC	3 cut(s)	370, 535, 768
HpaII	CCGG	2 cut(s)	152, 697
HphI	GGTGA	1 cut(s)	830
Hpy166II	GTNNAC	2 cut(s)	146, 862
Hpy188I	TCNGA	2 cut(s)	445, 765
Hpy188III	TCNNGA	2 cut(s)	131, 276
Hpy8I	GTNNAC	2 cut(s)	146, 862
HpyAV	CCTTC	9 cut(s)	59, 95, 176, 295, 440, 636, 739, 793, 947
HpyCH4III	ACNGT	6 cut(s)	192, 265, 343, 396, 404, 658
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	6 cut(s)	137, 581, 629, 653, 755, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 278, 290, 917, 932
HpyF3I	CTNAG	3 cut(s)	257, 307, 762
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	6 cut(s)	31, 51, 128, 388, 629, 939
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	5 cut(s)	24, 70, 326, 361, 748
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	3 cut(s)	268, 767, 770
LweI	GCATC	2 cut(s)	124, 259
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	3 cut(s)	346, 367, 571
MalI	GATC	5 cut(s)	26, 72, 328, 363, 750
MboI	GATC	5 cut(s)	24, 70, 326, 361, 748
MboII	GAAGA	1 cut(s)	698
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	2 cut(s)	70, 748
MlyI	GAGTC	2 cut(s)	364, 544
MmeI	TCCRAC	2 cut(s)	370, 378
MnlI	CCTC	7 cut(s)	171, 316, 775, 816, 880, 932, 950
MroNI	GCCGGC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	5 cut(s)	174, 222, 432, 812, 948
MslI	CAYNNNNRTG	1 cut(s)	624
MspI	CCGG	2 cut(s)	152, 697
MspR9I	CCNGG	3 cut(s)	569, 697, 881
MunI	CAATTG	1 cut(s)	576
MvaI	CCWGG	2 cut(s)	569, 881
MwoI	GCNNNNNNNGC	5 cut(s)	37, 278, 290, 917, 932
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	697
NcoI	CCATGG	1 cut(s)	384
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	5 cut(s)	24, 70, 326, 361, 748
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	6 cut(s)	31, 51, 128, 388, 629, 939
NlaIV	GGNNCC	3 cut(s)	72, 701, 750
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	768
PkrI	GCNGC	3 cut(s)	283, 757, 760
PleI	GAGTC	2 cut(s)	364, 543
PpsI	GAGTC	2 cut(s)	364, 543
Psp6I	CCWGG	2 cut(s)	567, 879
PspGI	CCWGG	2 cut(s)	567, 879
PspN4I	GGNNCC	3 cut(s)	72, 701, 750
PspPI	GGNCC	2 cut(s)	645, 699
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	2 cut(s)	70, 748
RsaI	GTAC	2 cut(s)	118, 861
RsaNI	GTAC	2 cut(s)	117, 860
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	5 cut(s)	174, 222, 432, 812, 948
SatI	GCNGC	3 cut(s)	282, 756, 759
Sau3AI	GATC	5 cut(s)	24, 70, 326, 361, 748
Sau96I	GGNCC	2 cut(s)	645, 699
SchI	GAGTC	2 cut(s)	364, 544
ScrFI	CCNGG	3 cut(s)	569, 697, 881
SfaNI	GCATC	2 cut(s)	124, 259
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	645
SmiMI	CAYNNNNRTG	1 cut(s)	624
SphI	GCATGC	1 cut(s)	629
SseBI	AGGCCT	1 cut(s)	305
SspMI	CTAG	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	567, 695, 879
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	6 cut(s)	192, 265, 343, 396, 404, 658
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	2 cut(s)	364, 427
TatI	WGTACW	1 cut(s)	859
TfiI	GAWTC	1 cut(s)	768
Tru1I	TTAA	5 cut(s)	174, 222, 432, 812, 948
Tru9I	TTAA	5 cut(s)	174, 222, 432, 812, 948
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	281, 755, 758
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	6 cut(s)	108, 228, 453, 728, 744, 804
TspGWI	ACGGA	1 cut(s)	858
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	645
XagI	CCTNNNNNAGG	1 cut(s)	884
XapI	RAATTY	5 cut(s)	225, 235, 521, 899, 940
XceI	RCATGY	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.