Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Reverse (-)

43673197 .. 43680907

Gene Structure 7711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGACAATGTTAACCTTTTGACGAGTACGGATGCGGATGGTGGACTGCCGGCTTCTCCTATTAGATTTAACAAAGGAATATTGTTAGCTGCCTCAACAAATGACAATGGTATTAAAATTCGGCAAATTCATATGGAATTAGGTTGCCGAGAACAGTGGATGCTTCCGAGCTGCTTCGTGGCTGTTGTGAAGGCCTTAGCAATAGGAACATTTGGATCGTCTAACATTATTTGTTGGAACAGGCATTGGAGATCGAGTGGCCCCAATGCCGGCCATGTTCCAGGATTTAGCTGCCAAAATTGCGGACTTGGCATTTCATTGATTTGTGGTGGAATCCCGGCAAGCACAAGAGTTTTGTCTCTCTCGGGGTTATGGAGGCGAAGAAGTAATTGCAGATCATGGTGGACATGGATCATGGTGGACATTGGGCATTTCCCAACAAGTTCTCAAGATTTGCTAAAAGTGCCTTCTGTGATGCTTATGTTCCCGGCAAACAACAGTTTTGTGGTCCATGACCCCCGGCTTAGCAGCATTTGGATTCGTTGGAACAGGCTTGATCCATTGCTTAATGCCTTTAATAATACCGAGGTACAGAACACCCTGCTCCTCTCCACCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

206

Amino Acids

22.73

Weight (kDa)

9.23

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 303
AclWI	GGATC	3 cut(s)	223, 419, 551
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	117, 126
AfaI	GTAC	2 cut(s)	28, 591
AfiI	CCNNNNNNNGG	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	3 cut(s)	89, 171, 291
AluI	AGCT	3 cut(s)	89, 171, 291
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	3 cut(s)	223, 419, 551
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	3 cut(s)	192, 259, 271
ApeKI	GCWGC	4 cut(s)	89, 171, 291, 528
ApoI	RAATTY	2 cut(s)	117, 126
AspS9I	GGNCC	2 cut(s)	260, 508
AsuC2I	CCSGG	3 cut(s)	338, 488, 520
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	508
BbvI	GCAGC	4 cut(s)	76, 158, 278, 540
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	3 cut(s)	338, 488, 520
BcoDI	GTCTC	1 cut(s)	363
BisI	GCNGC	4 cut(s)	90, 172, 292, 529
BlpI	GCTNAGC	1 cut(s)	524
BlsI	GCNGC	4 cut(s)	91, 173, 293, 530
Bme1390I	CCNGG	4 cut(s)	282, 338, 488, 520
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	260, 508
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	4 cut(s)	282, 338, 488, 520
BmsI	GCATC	3 cut(s)	22, 150, 465
Bpu10I	CCTNAGC	1 cut(s)	196
Bpu1102I	GCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	432
BpuMI	CCSGG	3 cut(s)	338, 488, 520
BsaJI	CCNNGG	2 cut(s)	518, 585
BsaWI	WCCGGW	1 cut(s)	614
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	2 cut(s)	49, 269
Bse3DI	GCAATG	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	518, 585
BseGI	GGATG	3 cut(s)	37, 43, 165
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	1 cut(s)	560
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	4 cut(s)	76, 158, 278, 540
BshFI	GGCC	3 cut(s)	194, 261, 273
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	6 cut(s)	50, 270, 338, 488, 520, 615
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	194, 261, 273
BsoBI	CYCGRG	1 cut(s)	364
Bsp143I	GATC	5 cut(s)	215, 251, 395, 411, 556
Bsp1720I	GCTNAGC	1 cut(s)	524
BspACI	CCGC	2 cut(s)	35, 303
BspANI	GGCC	3 cut(s)	194, 261, 273
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	3 cut(s)	223, 419, 551
BsrDI	GCAATG	1 cut(s)	560
BsrFI	RCCGGY	2 cut(s)	49, 269
BssAI	RCCGGY	2 cut(s)	49, 269
BssECI	CCNNGG	2 cut(s)	518, 585
BssMI	GATC	5 cut(s)	215, 251, 395, 411, 556
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	156, 500
BstC8I	GCNNGC	3 cut(s)	51, 271, 343
BstDEI	CTNAG	2 cut(s)	196, 524
BstF5I	GGATG	3 cut(s)	37, 43, 165
BstKTI	GATC	5 cut(s)	218, 254, 398, 414, 559
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	5 cut(s)	215, 251, 395, 411, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	300, 309, 463
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	4 cut(s)	280, 336, 486, 518
BstV1I	GCAGC	4 cut(s)	76, 158, 278, 540
BsuRI	GGCC	3 cut(s)	194, 261, 273
BtsCI	GGATG	3 cut(s)	37, 43, 165
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	3 cut(s)	51, 271, 343
Cfr10I	RCCGGY	2 cut(s)	49, 269
Cfr13I	GGNCC	2 cut(s)	260, 508
Csp6I	GTAC	2 cut(s)	27, 590
CviAII	CATG	5 cut(s)	275, 399, 408, 415, 512
CviQI	GTAC	2 cut(s)	27, 590
DdeI	CTNAG	2 cut(s)	196, 524
DpnI	GATC	5 cut(s)	217, 253, 397, 413, 558
DpnII	GATC	5 cut(s)	215, 251, 395, 411, 556
EaeI	YGGCCR	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	5 cut(s)	278, 402, 411, 418, 515
FaiI	YATR	9 cut(s)	132, 134, 276, 373, 400, 409, 416, 482, 513
FatI	CATG	5 cut(s)	274, 398, 407, 414, 511
FauNDI	CATATG	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	90, 172, 292, 529
FokI	GGATG	3 cut(s)	44, 50, 172
Fsp4HI	GCNGC	4 cut(s)	90, 172, 292, 529
GluI	GCNGC	4 cut(s)	90, 172, 292, 529
HaeIII	GGCC	3 cut(s)	194, 261, 273
HapII	CCGG	6 cut(s)	50, 270, 338, 488, 520, 615
Hin1II	CATG	5 cut(s)	278, 402, 411, 418, 515
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	333, 538
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	6 cut(s)	50, 270, 338, 488, 520, 615
Hpy166II	GTNNAC	4 cut(s)	13, 44, 405, 421
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	4 cut(s)	13, 44, 405, 421
HpyAV	CCTTC	2 cut(s)	184, 477
HpyCH4III	ACNGT	2 cut(s)	156, 500
HpyCH4V	TGCA	1 cut(s)	393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	300, 309, 463
HpyF3I	CTNAG	2 cut(s)	196, 524
Hsp92II	CATG	5 cut(s)	278, 402, 411, 418, 515
KroI	GCCGGC	2 cut(s)	49, 269
KroNI	GCCGGC	2 cut(s)	51, 271
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	5 cut(s)	215, 251, 395, 411, 556
LmnI	GCTCC	1 cut(s)	609
Lsp1109I	GCAGC	4 cut(s)	76, 158, 278, 540
LweI	GCATC	3 cut(s)	22, 150, 465
MalI	GATC	5 cut(s)	217, 253, 397, 413, 558
MboI	GATC	5 cut(s)	215, 251, 395, 411, 556
MboII	GAAGA	1 cut(s)	393
MluCI	AATT	5 cut(s)	117, 126, 137, 298, 388
MmeI	TCCRAC	2 cut(s)	215, 524
MnlI	CCTC	4 cut(s)	103, 369, 580, 617
MroNI	GCCGGC	2 cut(s)	49, 269
MseI	TTAA	5 cut(s)	12, 69, 114, 567, 576
MspI	CCGG	6 cut(s)	50, 270, 338, 488, 520, 615
MspR9I	CCNGG	4 cut(s)	282, 338, 488, 520
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	300, 309, 463
NaeI	GCCGGC	2 cut(s)	51, 271
NciI	CCSGG	3 cut(s)	338, 488, 520
NdeI	CATATG	1 cut(s)	132
NdeII	GATC	5 cut(s)	215, 251, 395, 411, 556
NgoMIV	GCCGGC	2 cut(s)	49, 269
NlaIII	CATG	5 cut(s)	278, 402, 411, 418, 515
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	194
PdiI	GCCGGC	2 cut(s)	51, 271
PfeI	GAWTC	2 cut(s)	333, 538
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	4 cut(s)	91, 173, 293, 530
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	260, 508
RsaI	GTAC	2 cut(s)	28, 591
RsaNI	GTAC	2 cut(s)	27, 590
SaqAI	TTAA	5 cut(s)	12, 69, 114, 567, 576
SatI	GCNGC	4 cut(s)	90, 172, 292, 529
Sau3AI	GATC	5 cut(s)	215, 251, 395, 411, 556
Sau96I	GGNCC	2 cut(s)	260, 508
ScrFI	CCNGG	4 cut(s)	282, 338, 488, 520
SetI	ASST	6 cut(s)	18, 91, 145, 173, 293, 591
SfaNI	GCATC	3 cut(s)	22, 150, 465
SinI	GGWCC	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	5 cut(s)	117, 126, 137, 298, 388
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	35, 303
SspI	AATATT	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	4 cut(s)	280, 336, 486, 518
TaaI	ACNGT	2 cut(s)	156, 500
TaqI	TCGA	1 cut(s)	254
TasI	AATT	5 cut(s)	117, 126, 137, 298, 388
TfiI	GAWTC	2 cut(s)	333, 538
Tru1I	TTAA	5 cut(s)	12, 69, 114, 567, 576
Tru9I	TTAA	5 cut(s)	12, 69, 114, 567, 576
TscAI	CASTG	1 cut(s)	161
TseI	GCWGC	4 cut(s)	89, 171, 291, 528
TspDTI	ATGAA	2 cut(s)	119, 306
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	2 cut(s)	117, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.