Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004832

Physical Location & Seq

Genomic Coordinates Reverse (-)

24023 .. 26415

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG000100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 613 bp

ATGGACAATGTTAACCTTTTGACAAGTACAGATGCAGATGGTGGACTGCTGGCTTCTCCTCCTATTAGATTTAACAAAGAAGAAATACTGTTAGCTGTCTCAACAAATGACAATGGTATTAAAATTCTAGCAAATTCAGATGGAATTAGGTTACTGAGAACAGTGGATGCTTCCAGAGCTGCTTCTGTGGCTGTTGTGAAGGTCTCAGCAGTAGGAACATTTGGATTGTCTAACATTACTGTTGGAACATGCATTGGAGATCGAGCAGCTCCAATGCCAGGCATGGTTGGACTGATCCCTGGCAGCAGACAAGTTCTTGAACTTTTGAAAGCTACTTCAGACCCATCTCCCAATGTTCTCGACATCGTGCTTTACTTTTCAAGGCGTAACGGAGAGATTAGGGGTATTTCAGCAGAGATAAAATTGCACCACCAGCGGCAAGAGGAGGACAAAGTACTAGATGAAGAAATTGAAGAGGATGAGATGTTCTGGAATCAAGAAGCTCTTAAAGAGGAGGAAGAAGATGATAACTATGAAGTGGAGCTGAAGTTGCTGATGTGTTCTCAAATTGTTTACTTTAATTTCAAGTTTTCTAGCATTTTAGAGGAAATGT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

204

Amino Acids

22.54

Weight (kDa)

4.48

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02730 FvH4_1g02730
rosa_chinensis	RchiOBHm_Chr4g0388361 RchiOBHm_Chr5g0002681 RchiOBHm_Chr5g0040691 RchiOBHm_Chr6g0261161
rosa_multiflora	Rmu_sc0001572.1_g000035
rosa_roxburghii	Rroxscaffold_4G00318010
rosa_rugosa	Rorug01G0019300 Rorug01G0019300 Rorug04G0047500 Rorug05G0230300 Rorug05G0254100 Rorug06G0356100 Rorug06G0356200
rosa_samantha	Rh4AG102300 Rh4CG110600 Rh4DG000100 Rh5AG185000 Rh5AG378600 Rh5AG514600 Rh5DG128300 Rh5DG519800 Rh6AG242600 Rh6CG051300 Rh6CG052900 Rh6CG105300
rosa_wichuraiana	Rw1G019810 Rw1G024070 Rw3G020490 Rw4G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	123, 133
AcuI	CTGAAG	2 cut(s)	321, 566
AfaI	GTAC	2 cut(s)	28, 456
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	5 cut(s)	320, 328, 381, 473, 586
AjnI	CCWGG	2 cut(s)	277, 298
AloI	GAACNNNNNNTCC	2 cut(s)	470, 502
AluBI	AGCT	6 cut(s)	95, 179, 269, 332, 503, 544
AluI	AGCT	6 cut(s)	95, 179, 269, 332, 503, 544
Alw26I	GTCTC	2 cut(s)	103, 208
AlwI	GGATC	1 cut(s)	289
ApeKI	GCWGC	3 cut(s)	179, 266, 303
ApoI	RAATTY	2 cut(s)	123, 133
BbvI	GCAGC	3 cut(s)	166, 278, 315
BccI	CCATC	3 cut(s)	32, 134, 352
BciT130I	CCWGG	2 cut(s)	279, 300
BcoDI	GTCTC	2 cut(s)	103, 208
BfaI	CTAG	3 cut(s)	128, 458, 594
BisI	GCNGC	4 cut(s)	180, 267, 304, 437
BlsI	GCNGC	4 cut(s)	181, 268, 305, 438
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	2 cut(s)	279, 300
BmrFI	CCNGG	2 cut(s)	279, 300
BmsI	GCATC	2 cut(s)	22, 157
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	279, 300
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	172, 484
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	146, 219
BseRI	GAGGAG	3 cut(s)	48, 458, 527
BseXI	GCAGC	3 cut(s)	166, 278, 315
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	103, 208
Bso31I	GGTCTC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	259, 294
BspACI	CCGC	1 cut(s)	436
BspCNI	CTCAG	2 cut(s)	147, 218
BspPI	GGATC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	2 cut(s)	259, 294
Bst2UI	CCWGG	2 cut(s)	279, 300
Bst4CI	ACNGT	3 cut(s)	90, 163, 241
Bst6I	CTCTTC	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	155, 205
BstF5I	GGATG	2 cut(s)	172, 484
BstKTI	GATC	2 cut(s)	262, 297
BstMAI	GTCTC	2 cut(s)	103, 208
BstMBI	GATC	2 cut(s)	259, 294
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 188, 433, 550
BstNI	CCWGG	2 cut(s)	279, 300
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	277, 298
BstV1I	GCAGC	3 cut(s)	166, 278, 315
BtsCI	GGATG	2 cut(s)	172, 484
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	27, 455
CviAII	CATG	2 cut(s)	249, 283
CviJI	RGCY	8 cut(s)	53, 95, 179, 191, 269, 332, 503, 544
CviKI_1	RGCY	8 cut(s)	53, 95, 179, 191, 269, 332, 503, 544
CviQI	GTAC	2 cut(s)	27, 455
DdeI	CTNAG	2 cut(s)	155, 205
DpnI	GATC	2 cut(s)	261, 296
DpnII	GATC	2 cut(s)	259, 294
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	321, 566
EcoRII	CCWGG	2 cut(s)	277, 298
EcoT22I	ATGCAT	1 cut(s)	254
FaeI	CATG	2 cut(s)	252, 286
FaiI	YATR	3 cut(s)	250, 284, 534
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	2 cut(s)	248, 282
Fnu4HI	GCNGC	4 cut(s)	180, 267, 304, 437
FokI	GGATG	2 cut(s)	179, 491
Fsp4HI	GCNGC	4 cut(s)	180, 267, 304, 437
FspBI	CTAG	3 cut(s)	128, 458, 594
GluI	GCNGC	4 cut(s)	180, 267, 304, 437
Hin1II	CATG	2 cut(s)	252, 286
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	493
HpaI	GTTAAC	1 cut(s)	13
Hpy166II	GTNNAC	3 cut(s)	13, 44, 574
Hpy188I	TCNGA	2 cut(s)	139, 340
Hpy188III	TCNNGA	5 cut(s)	174, 317, 359, 490, 497
Hpy8I	GTNNAC	3 cut(s)	13, 44, 574
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	90, 163, 241
HpyCH4V	TGCA	3 cut(s)	35, 252, 427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 188, 433, 550
HpyF3I	CTNAG	2 cut(s)	155, 205
Hsp92II	CATG	2 cut(s)	252, 286
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	259, 294
LmnI	GCTCC	2 cut(s)	274, 541
LpnPI	CCDG	8 cut(s)	35, 187, 264, 285, 291, 312, 446, 475
Lsp1109I	GCAGC	3 cut(s)	166, 278, 315
LweI	GCATC	2 cut(s)	22, 157
MaeI	CTAG	3 cut(s)	128, 458, 594
MaeIII	GTNAC	2 cut(s)	150, 386
MalI	GATC	2 cut(s)	261, 296
MboI	GATC	2 cut(s)	259, 294
MboII	GAAGA	5 cut(s)	92, 476, 485, 530, 533
MluCI	AATT	7 cut(s)	123, 133, 144, 422, 468, 567, 580
MmeI	TCCRAC	2 cut(s)	223, 268
MnlI	CCTC	7 cut(s)	69, 436, 439, 469, 505, 508, 598
Mph1103I	ATGCAT	1 cut(s)	254
MseI	TTAA	5 cut(s)	12, 72, 120, 507, 579
MspA1I	CMGCKG	1 cut(s)	436
MspR9I	CCNGG	2 cut(s)	279, 300
MvaI	CCWGG	2 cut(s)	279, 300
MwoI	GCNNNNNNNGC	4 cut(s)	176, 188, 433, 550
NdeII	GATC	2 cut(s)	259, 294
NlaIII	CATG	2 cut(s)	252, 286
NsiI	ATGCAT	1 cut(s)	254
NspI	RCATGY	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	4 cut(s)	181, 268, 305, 438
Psp6I	CCWGG	2 cut(s)	277, 298
PspGI	CCWGG	2 cut(s)	277, 298
RsaI	GTAC	2 cut(s)	28, 456
RsaNI	GTAC	2 cut(s)	27, 455
SaqAI	TTAA	5 cut(s)	12, 72, 120, 507, 579
SatI	GCNGC	4 cut(s)	180, 267, 304, 437
Sau3AI	GATC	2 cut(s)	259, 294
ScaI	AGTACT	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	279, 300
SetI	ASST	9 cut(s)	18, 97, 152, 181, 204, 271, 334, 505, 546
SfaNI	GCATC	2 cut(s)	22, 157
Sse9I	AATT	7 cut(s)	123, 133, 144, 422, 468, 567, 580
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	3 cut(s)	128, 458, 594
StyD4I	CCNGG	2 cut(s)	277, 298
TaaI	ACNGT	3 cut(s)	90, 163, 241
TaqI	TCGA	2 cut(s)	262, 360
TasI	AATT	7 cut(s)	123, 133, 144, 422, 468, 567, 580
TatI	WGTACW	2 cut(s)	26, 454
TauI	GCSGC	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	5 cut(s)	12, 72, 120, 507, 579
Tru9I	TTAA	5 cut(s)	12, 72, 120, 507, 579
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	3 cut(s)	179, 266, 303
TspDTI	ATGAA	2 cut(s)	477, 549
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	168
XapI	RAATTY	2 cut(s)	123, 133
XceI	RCATGY	1 cut(s)	252
XspI	CTAG	3 cut(s)	128, 458, 594
ZrmI	AGTACT	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.