Rmu_sc0001701.1_g000014

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001701.1
OG0009435
Physical Location & Seq
Reverse (-)
88263 .. 90342
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 789 bp
atggttgaaccggtgattcacaaaaattctgttgtagtagtgaaactgccaaaggtatatcagacagatacgcaatccaacggtcccggtatctcacccacatggttaagccggtacaggcgcaggcactgcatcaccacccgttttcattatcttcttctccctccatttccaacgcggcaaacccggccaccagaattggagagcgaaaatccgatggaccacgccattccctgcaacccctgcattcctctctaccggaagcccacgctccgccgccgaatcacttggccgaccagcaccaccgttcgccactccaatacaacaaaatggcgccgcaatacgacgtcgtcggagctccaaatgcccgtagaagtgaacgaccgaacgagtagcgactctgcttcagtcccgacgcacaaagtcaccgtccacgacagacaacgcggcgtggtccacgagttcttcgttccagaggatcagtacatattgcacactgctgaggcacagaacatcactcttccattcgcttgccggcacggttgttgtactagttgtgctgtacgtgtgaagtctggaaaacttaaccagcctcaggcactagggatatcggctgaattgaaatcaaagggatatgcacttctctgtgtgggttttccatcatctgatcttgaagtagaaacacaagatgaggatgaggtatactggcttcaattcgggagatattttgcacggggtccaattgaaagagatgattatgcattggagttggcattgggtgatgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

262

Amino Acids

29.92

Weight (kDa)

8.4

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 152 - 219 1.6e-13 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 333
AccI GTMKAC 1 cut(s) 702
AccII CGCG 2 cut(s) 178, 447
AciI CCGC 5 cut(s) 178, 274, 277, 337, 447
AclWI GGATC 1 cut(s) 486
AcoI YGGCCR 2 cut(s) 188, 290
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 2 cut(s) 334, 347
AfaI GTAC 4 cut(s) 116, 485, 550, 564
AfiI CCNNNNNNNGG 1 cut(s) 595
AflIII ACRYGT 1 cut(s) 565
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 5 cut(s) 8, 622, 674, 713, 746
AhlI ACTAGT 1 cut(s) 551
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
Alw21I GWGCWC 1 cut(s) 360
AlwI GGATC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 129
AoxI GGCC 2 cut(s) 188, 290
ApoI RAATTY 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
AsiGI ACCGGT 1 cut(s) 10
AspLEI GCGC 2 cut(s) 123, 336
AspS9I GGNCC 4 cut(s) 83, 220, 454, 737
AsuC2I CCSGG 2 cut(s) 87, 187
AsuHPI GGTGA 4 cut(s) 25, 87, 127, 418
AvaII GGWCC 4 cut(s) 83, 220, 454, 737
AxyI CCTNAGG 1 cut(s) 594
BanI GGYRCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 360
BarI GAAGNNNNNNTAC 2 cut(s) 693, 725
BauI CACGAG 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 360
BbvCI CCTCAGC 1 cut(s) 501
BccI CCATC 2 cut(s) 211, 667
BcnI CCSGG 2 cut(s) 87, 187
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 2 cut(s) 552, 602
BfoI RGCGCY 1 cut(s) 337
BisI GCNGC 4 cut(s) 179, 277, 337, 448
BlsI GCNGC 4 cut(s) 180, 278, 338, 449
Bme1390I CCNGG 2 cut(s) 87, 187
Bme18I GGWCC 4 cut(s) 83, 220, 454, 737
BmgT120I GGNCC 4 cut(s) 83, 220, 454, 737
BmiI GGNNCC 3 cut(s) 85, 335, 738
BmrFI CCNGG 2 cut(s) 87, 187
BmsI GCATC 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 2 cut(s) 87, 187
BsaAI YACGTR 1 cut(s) 566
BsaHI GRCGYC 2 cut(s) 334, 347
BsaWI WCCGGW 2 cut(s) 10, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 595
Bse118I RCCGGY 3 cut(s) 10, 111, 534
Bse1I ACTGG 1 cut(s) 710
Bse21I CCTNAGG 1 cut(s) 594
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 1 cut(s) 595
BseMII CTCAG 2 cut(s) 492, 608
BseNI ACTGG 1 cut(s) 710
Bsh1236I CGCG 2 cut(s) 178, 447
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 190, 292
BshNI GGYRCC 1 cut(s) 333
BshTI ACCGGT 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 6 cut(s) 11, 87, 112, 187, 259, 535
BslFI GGGAC 2 cut(s) 69, 395
BslI CCNNNNNNNGG 1 cut(s) 595
BsmFI GGGAC 2 cut(s) 69, 395
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 2 cut(s) 190, 292
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 478, 667
BspACI CCGC 5 cut(s) 178, 274, 277, 337, 447
BspANI GGCC 2 cut(s) 190, 292
BspCNI CTCAG 2 cut(s) 493, 607
BspFNI CGCG 2 cut(s) 178, 447
BspLI GGNNCC 3 cut(s) 85, 335, 738
BspPI GGATC 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 333
BsrFI RCCGGY 3 cut(s) 10, 111, 534
BsrI ACTGG 1 cut(s) 710
BssAI RCCGGY 3 cut(s) 10, 111, 534
BssMI GATC 2 cut(s) 478, 667
BssNAI GTATAC 1 cut(s) 703
BssNI GRCGYC 2 cut(s) 334, 347
BssSI CACGAG 1 cut(s) 458
Bst1107I GTATAC 1 cut(s) 703
Bst2BI CACGAG 1 cut(s) 458
Bst4CI ACNGT 4 cut(s) 83, 307, 430, 542
Bst6I CTCTTC 1 cut(s) 525
BstACI GRCGYC 2 cut(s) 334, 347
BstAPI GCANNNNNTGC 2 cut(s) 129, 243
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 3 cut(s) 125, 532, 536
BstDEI CTNAG 2 cut(s) 501, 594
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 2 cut(s) 178, 447
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 2 cut(s) 123, 336
BstKTI GATC 2 cut(s) 481, 670
BstMBI GATC 2 cut(s) 478, 667
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 4 cut(s) 129, 187, 243, 364
BstSCI CCNGG 2 cut(s) 85, 185
BstUI CGCG 2 cut(s) 178, 447
BstZ17I GTATAC 1 cut(s) 703
Bsu36I CCTNAGG 1 cut(s) 594
BsuRI GGCC 2 cut(s) 190, 292
BtsCI GGATG 1 cut(s) 700
BtsI GCAGTG 2 cut(s) 127, 495
BtsIMutI CAGTG 2 cut(s) 127, 495
Cac8I GCNNGC 3 cut(s) 125, 532, 536
CaiI CAGNNNCTG 1 cut(s) 129
CfoI GCGC 2 cut(s) 123, 336
Cfr10I RCCGGY 3 cut(s) 10, 111, 534
Cfr13I GGNCC 4 cut(s) 83, 220, 454, 737
CseI GACGC 1 cut(s) 424
Csp6I GTAC 4 cut(s) 115, 484, 549, 563
CspAI ACCGGT 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 180, 215
CviAII CATG 1 cut(s) 102
CviJI RGCY 8 cut(s) 111, 190, 265, 292, 358, 592, 614, 709
CviKI_1 RGCY 8 cut(s) 111, 190, 265, 292, 358, 592, 614, 709
CviQI GTAC 4 cut(s) 115, 484, 549, 563
DdeI CTNAG 2 cut(s) 501, 594
DinI GGCGCC 1 cut(s) 335
DpnI GATC 2 cut(s) 480, 669
DpnII GATC 2 cut(s) 478, 667
EaeI YGGCCR 2 cut(s) 188, 290
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 360
Eco32I GATATC 1 cut(s) 609
Eco47I GGWCC 4 cut(s) 83, 220, 454, 737
Eco53kI GAGCTC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 390
Eco81I CCTNAGG 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 358
EcoRV GATATC 1 cut(s) 609
EcoT22I ATGCAT 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 360
EgeI GGCGCC 1 cut(s) 335
EheI GGCGCC 1 cut(s) 335
FaeI CATG 1 cut(s) 105
FaiI YATR 6 cut(s) 58, 103, 488, 636, 703, 759
FaqI GGGAC 2 cut(s) 69, 395
FatI CATG 1 cut(s) 101
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 4 cut(s) 179, 277, 337, 448
FokI GGATG 1 cut(s) 707
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 4 cut(s) 179, 277, 337, 448
FspBI CTAG 2 cut(s) 552, 602
GlaI GCGC 2 cut(s) 122, 335
GluI GCNGC 4 cut(s) 179, 277, 337, 448
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 2 cut(s) 190, 292
HapII CCGG 6 cut(s) 11, 87, 112, 187, 259, 535
HgaI GACGC 1 cut(s) 424
HhaI GCGC 2 cut(s) 123, 336
Hin1I GRCGYC 2 cut(s) 334, 347
Hin1II CATG 1 cut(s) 105
Hin6I GCGC 2 cut(s) 121, 334
HinP1I GCGC 2 cut(s) 121, 334
HinfI GANTC 3 cut(s) 16, 282, 398
HpaII CCGG 6 cut(s) 11, 87, 112, 187, 259, 535
HphI GGTGA 4 cut(s) 25, 87, 127, 418
Hpy166II GTNNAC 4 cut(s) 379, 433, 457, 703
Hpy188I TCNGA 4 cut(s) 63, 216, 355, 667
Hpy188III TCNNGA 5 cut(s) 412, 473, 576, 671, 718
Hpy8I GTNNAC 4 cut(s) 379, 433, 457, 703
Hpy99I CGWCG 4 cut(s) 349, 352, 355, 418
HpyCH4III ACNGT 4 cut(s) 83, 307, 430, 542
HpyCH4IV ACGT 2 cut(s) 347, 565
HpyCH4V TGCA 7 cut(s) 132, 237, 246, 493, 638, 731, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 187, 243, 364
HpyF3I CTNAG 2 cut(s) 501, 594
HpySE526I ACGT 2 cut(s) 347, 565
Hsp92I GRCGYC 2 cut(s) 334, 347
Hsp92II CATG 1 cut(s) 105
HspAI GCGC 2 cut(s) 121, 334
KasI GGCGCC 1 cut(s) 333
KroI GCCGGC 1 cut(s) 534
KroNI GCCGGC 1 cut(s) 536
Kzo9I GATC 2 cut(s) 478, 667
LmnI GCTCC 3 cut(s) 276, 355, 363
LweI GCATC 1 cut(s) 141
MaeI CTAG 2 cut(s) 552, 602
MaeII ACGT 2 cut(s) 347, 565
MaeIII GTNAC 1 cut(s) 424
MalI GATC 2 cut(s) 480, 669
MboI GATC 2 cut(s) 478, 667
MboII GAAGA 4 cut(s) 146, 149, 457, 512
MfeI CAATTG 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 5 cut(s) 25, 197, 617, 713, 741
Mly113I GGCGCC 1 cut(s) 334
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 3 cut(s) 102, 197, 333
MnlI CCTC 7 cut(s) 174, 261, 469, 496, 603, 685, 691
Mph1103I ATGCAT 1 cut(s) 763
MroNI GCCGGC 1 cut(s) 534
MseI TTAA 2 cut(s) 107, 585
MslI CAYNNNNRTG 1 cut(s) 100
MspI CCGG 6 cut(s) 11, 87, 112, 187, 259, 535
MspR9I CCNGG 2 cut(s) 87, 187
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 1 cut(s) 246
MvnI CGCG 2 cut(s) 178, 447
MwoI GCNNNNNNNGC 4 cut(s) 129, 187, 243, 364
NaeI GCCGGC 1 cut(s) 536
NarI GGCGCC 1 cut(s) 334
NciI CCSGG 2 cut(s) 87, 187
NdeII GATC 2 cut(s) 478, 667
NgoMIV GCCGGC 1 cut(s) 534
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 3 cut(s) 85, 335, 738
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 763
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PctI GAATGC 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 536
PfeI GAWTC 2 cut(s) 16, 282
PflFI GACNNNGTC 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 4 cut(s) 180, 278, 338, 449
PleI GAGTC 1 cut(s) 392
PluTI GGCGCC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 85, 335, 738
PspPI GGNCC 4 cut(s) 83, 220, 454, 737
PstNI CAGNNNCTG 1 cut(s) 129
PsyI GACNNNGTC 1 cut(s) 349
RsaI GTAC 4 cut(s) 116, 485, 550, 564
RsaNI GTAC 4 cut(s) 115, 484, 549, 563
RseI CAYNNNNRTG 1 cut(s) 100
SacI GAGCTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 107, 585
SatI GCNGC 4 cut(s) 179, 277, 337, 448
Sau3AI GATC 2 cut(s) 478, 667
Sau96I GGNCC 4 cut(s) 83, 220, 454, 737
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 87, 187
SduI GDGCHC 1 cut(s) 360
SetI ASST 5 cut(s) 57, 350, 360, 568, 702
SfaNI GCATC 1 cut(s) 141
SfoI GGCGCC 1 cut(s) 335
SinI GGWCC 4 cut(s) 83, 220, 454, 737
SmiMI CAYNNNNRTG 1 cut(s) 100
SpeI ACTAGT 1 cut(s) 551
Sse9I AATT 5 cut(s) 25, 197, 617, 713, 741
SsiI CCGC 5 cut(s) 178, 274, 277, 337, 447
SspDI GGCGCC 1 cut(s) 333
SspMI CTAG 2 cut(s) 552, 602
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 2 cut(s) 85, 185
TaaI ACNGT 4 cut(s) 83, 307, 430, 542
TaiI ACGT 2 cut(s) 350, 568
TaqII GACCGA 1 cut(s) 399
TasI AATT 5 cut(s) 25, 197, 617, 713, 741
TatI WGTACW 2 cut(s) 483, 548
TauI GCSGC 4 cut(s) 181, 279, 339, 450
TfiI GAWTC 2 cut(s) 16, 282
Tru1I TTAA 2 cut(s) 107, 585
Tru9I TTAA 2 cut(s) 107, 585
TscAI CASTG 2 cut(s) 134, 502
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 2 cut(s) 134, 502
Tth111I GACNNNGTC 1 cut(s) 349
VpaK11BI GGWCC 4 cut(s) 83, 220, 454, 737
XapI RAATTY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 2 cut(s) 552, 602
ZraI GACGTC 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.