Rmu_sc0001714.1_g000007

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001714.1
OG0005376
Physical Location & Seq
Reverse (-)
25541 .. 28672
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
atgagtgtatgtgcagcagagttggccaaagctctcaaagggcagtggagtgaccacggttcaagccttggcgaccttgttgatttgaagtttaggctaactatgtggaggtttgatgcaattgggggtaatatgaggcaagctgtgaagatccgatgcaggtggggctctggtacatgtggtggcatttgcaggtggtggcgacccgaggcaggagatatggtaaaattgggttgggcttggctggttgcatgttgcttgtgcgccgcacctcatttcgcaaccatgggagcttacaagtatgtgtcggagctatggcggaagaagcaatctgatgtgatggggttcgtccagagggttcgctgctgggactaccgtcagcacccttcgattgtccgagtcacaaggcccacccgccctgacaaggctcgccgtctcggctacaaggccaagcagggatatgttatctaccgtgtccgtgtgaggcgtggtggtcgcaagaggccagttgccaagggtatcgtgtatggtaagcccaccaaccagggagttactcaactaaagttccaacgcagcaagaggtctgtcgctgaggagcgtgctgggcgtaagttgggtggccttagggttctcaattcctactggatcaatgaggactctacctacaagtacttcgaggttattctcgttgatgttgctcacacagttatcaagaaagacccaagaatcaactggatcgtcaatcctgttcacaagcacagagagcttcgtggtctcacatctgctgggaagaaatacaggggactgcgtggaaagggccacaattaccacaagaatcgtccttctcgcagggcaacctggaagagaaacaacaccctctcccttcgtcgctaccgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

299

Amino Acids

34.66

Weight (kDa)

10.87

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 97 - 285 9.5e-89 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 150, 183
Acc36I ACCTGC 2 cut(s) 150, 183
AciI CCGC 3 cut(s) 267, 319, 415
AclWI GGATC 3 cut(s) 145, 653, 743
AcoI YGGCCR 1 cut(s) 24
AfaI GTAC 2 cut(s) 175, 671
AfiI CCNNNNNNNGG 2 cut(s) 212, 424
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 2 cut(s) 63, 88
AjnI CCWGG 2 cut(s) 543, 857
AluBI AGCT 5 cut(s) 32, 143, 293, 313, 766
AluI AGCT 5 cut(s) 32, 143, 293, 313, 766
Alw26I GTCTC 2 cut(s) 440, 779
AlwI GGATC 3 cut(s) 145, 653, 743
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 6 cut(s) 24, 407, 447, 503, 619, 817
ApeKI GCWGC 3 cut(s) 14, 363, 573
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 408, 817
AvaI CYCGRG 1 cut(s) 206
AxyI CCTNAGG 1 cut(s) 623
BalI TGGCCA 1 cut(s) 26
BanII GRGCYC 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 591
BbvI GCAGC 3 cut(s) 26, 350, 585
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 2 cut(s) 545, 859
BcoDI GTCTC 2 cut(s) 440, 779
BfuAI ACCTGC 2 cut(s) 150, 183
BglI GCCNNNNNGGC 1 cut(s) 438
BisI GCNGC 4 cut(s) 15, 267, 364, 574
BlsI GCNGC 4 cut(s) 16, 268, 365, 575
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 2 cut(s) 545, 859
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 408, 817
BmrFI CCNGG 2 cut(s) 545, 859
BmsI GCATC 2 cut(s) 106, 146
BoxI GACNNNNGTC 1 cut(s) 375
Bpu10I CCTNAGC 1 cut(s) 591
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 6 cut(s) 55, 67, 207, 285, 513, 544
BsaXI ACNNNNNCTCC 4 cut(s) 207, 237, 863, 893
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 424
Bse1I ACTGG 3 cut(s) 506, 647, 737
Bse21I CCTNAGG 1 cut(s) 623
BseBI CCWGG 2 cut(s) 545, 859
BseDI CCNNGG 6 cut(s) 55, 67, 207, 285, 513, 544
BseLI CCNNNNNNNGG 2 cut(s) 212, 424
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 3 cut(s) 506, 647, 737
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 3 cut(s) 26, 350, 585
BseYI CCCAGC 3 cut(s) 366, 602, 785
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 6 cut(s) 26, 409, 449, 505, 621, 819
BsiHKCI CYCGRG 1 cut(s) 206
BslFI GGGAC 2 cut(s) 383, 816
BslI CCNNNNNNNGG 2 cut(s) 212, 424
BsmAI GTCTC 2 cut(s) 440, 779
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 383, 816
BsnI GGCC 6 cut(s) 26, 409, 449, 505, 621, 819
Bso31I GGTCTC 1 cut(s) 779
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 150, 645, 735
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 3 cut(s) 267, 319, 415
BspANI GGCC 6 cut(s) 26, 409, 449, 505, 621, 819
BspCNI CTCAG 1 cut(s) 583
BspMI ACCTGC 2 cut(s) 150, 183
BspPI GGATC 3 cut(s) 145, 653, 743
BspTNI GGTCTC 1 cut(s) 779
BsrI ACTGG 3 cut(s) 506, 647, 737
BssECI CCNNGG 6 cut(s) 55, 67, 207, 285, 513, 544
BssMI GATC 3 cut(s) 150, 645, 735
BssT1I CCWWGG 3 cut(s) 67, 285, 513
Bst2UI CCWGG 2 cut(s) 545, 859
Bst4CI ACNGT 5 cut(s) 59, 377, 473, 706, 896
Bst6I CTCTTC 1 cut(s) 857
BstC8I GCNNGC 3 cut(s) 141, 430, 600
BstDEI CTNAG 2 cut(s) 591, 623
BstDSI CCRYGG 2 cut(s) 55, 285
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 3 cut(s) 153, 648, 738
BstMAI GTCTC 2 cut(s) 440, 779
BstMBI GATC 3 cut(s) 150, 645, 735
BstMWI GCNNNNNNNGC 6 cut(s) 23, 165, 325, 438, 604, 763
BstNI CCWGG 2 cut(s) 545, 859
BstNSI RCATGY 2 cut(s) 180, 255
BstPAI GACNNNNGTC 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 543, 857
BstV1I GCAGC 3 cut(s) 26, 350, 585
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 623
BsuRI GGCC 6 cut(s) 26, 409, 449, 505, 621, 819
BtgI CCRYGG 2 cut(s) 55, 285
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 50
BveI ACCTGC 2 cut(s) 150, 183
Cac8I GCNNGC 3 cut(s) 141, 430, 600
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 408, 817
Csp6I GTAC 2 cut(s) 174, 670
CviAII CATG 3 cut(s) 177, 252, 286
CviQI GTAC 2 cut(s) 174, 670
DdeI CTNAG 2 cut(s) 591, 623
DpnI GATC 3 cut(s) 152, 647, 737
DpnII GATC 3 cut(s) 150, 645, 735
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 857
EarI CTCTTC 1 cut(s) 857
EciI GGCGGA 1 cut(s) 334
Eco130I CCWWGG 3 cut(s) 67, 285, 513
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 779
Eco81I CCTNAGG 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 2 cut(s) 543, 857
EcoT14I CCWWGG 3 cut(s) 67, 285, 513
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 3 cut(s) 67, 285, 513
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 3 cut(s) 180, 255, 289
FaqI GGGAC 2 cut(s) 383, 816
FatI CATG 3 cut(s) 176, 251, 285
FauI CCCGC 1 cut(s) 422
Fnu4HI GCNGC 4 cut(s) 15, 267, 364, 574
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 4 cut(s) 15, 267, 364, 574
GlaI GCGC 1 cut(s) 265
GluI GCNGC 4 cut(s) 15, 267, 364, 574
GsaI CCCAGC 3 cut(s) 370, 606, 789
HaeIII GGCC 6 cut(s) 26, 409, 449, 505, 621, 819
HhaI GCGC 1 cut(s) 266
Hin1II CATG 3 cut(s) 180, 255, 289
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 4 cut(s) 399, 656, 726, 835
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 4 cut(s) 155, 310, 334, 398
Hpy188III TCNNGA 2 cut(s) 352, 712
Hpy8I GTNNAC 1 cut(s) 751
Hpy99I CGWCG 1 cut(s) 891
HpyAV CCTTC 3 cut(s) 396, 852, 893
HpyCH4III ACNGT 5 cut(s) 59, 377, 473, 706, 896
HpyCH4V TGCA 5 cut(s) 14, 119, 159, 192, 251
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 165, 325, 438, 604, 763
HpyF3I CTNAG 2 cut(s) 591, 623
Hsp92II CATG 3 cut(s) 180, 255, 289
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 3 cut(s) 150, 645, 735
LmnI GCTCC 3 cut(s) 290, 310, 595
Lsp1109I GCAGC 3 cut(s) 26, 350, 585
LweI GCATC 2 cut(s) 106, 146
MaeIII GTNAC 3 cut(s) 50, 400, 550
MalI GATC 3 cut(s) 152, 647, 737
MboI GATC 3 cut(s) 150, 645, 735
MboII GAAGA 4 cut(s) 160, 334, 802, 874
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 4 cut(s) 120, 227, 634, 823
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 2 cut(s) 408, 650
MmeI TCCRAC 2 cut(s) 288, 592
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 545, 859
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 2 cut(s) 545, 859
MwoI GCNNNNNNNGC 6 cut(s) 23, 165, 325, 438, 604, 763
NcoI CCATGG 1 cut(s) 285
NdeII GATC 3 cut(s) 150, 645, 735
NlaIII CATG 3 cut(s) 180, 255, 289
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 50, 400
NspI RCATGY 2 cut(s) 180, 255
PaqCI CACCTGC 2 cut(s) 150, 183
PciI ACATGT 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 892
PfeI GAWTC 2 cut(s) 726, 835
PkrI GCNGC 4 cut(s) 16, 268, 365, 575
PleI GAGTC 2 cut(s) 407, 650
PpsI GAGTC 2 cut(s) 407, 650
PscI ACATGT 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 543, 857
PspFI CCCAGC 3 cut(s) 366, 602, 785
PspGI CCWGG 2 cut(s) 543, 857
PspPI GGNCC 2 cut(s) 408, 817
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 2 cut(s) 175, 671
RsaNI GTAC 2 cut(s) 174, 670
SatI GCNGC 4 cut(s) 15, 267, 364, 574
Sau3AI GATC 3 cut(s) 150, 645, 735
Sau96I GGNCC 2 cut(s) 408, 817
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 2 cut(s) 408, 650
ScrFI CCNGG 2 cut(s) 545, 859
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 2 cut(s) 106, 146
Sse9I AATT 4 cut(s) 120, 227, 634, 823
SsiI CCGC 3 cut(s) 267, 319, 415
StyD4I CCNGG 2 cut(s) 543, 857
StyI CCWWGG 3 cut(s) 67, 285, 513
TaaI ACNGT 5 cut(s) 59, 377, 473, 706, 896
TaqI TCGA 2 cut(s) 389, 675
TasI AATT 4 cut(s) 120, 227, 634, 823
TatI WGTACW 1 cut(s) 669
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 726, 835
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 2 cut(s) 50, 400
TseI GCWGC 3 cut(s) 14, 363, 573
Tsp45I GTSAC 2 cut(s) 50, 400
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 1 cut(s) 50
XceI RCATGY 2 cut(s) 180, 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 729
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.