Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001848.1

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Forward (+)

3019 .. 6565

Gene Structure 3547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgcatctggttaatcacgacgacaaggacaagaaatatgtagttctagtagcaaccggaagtttcaatcctcctacttacatgcatttacgaatgttggaactggcgagagacgcattgaattctgaaggcttttgtgtgattggaggttatatttcacctgttaatggtgcatacaacaagagcggacttatatctgctgaacatcgtatacagttgtgtcatctagcctgcaaaagttcagagtttgtaatggttgatccgtgggaggcaagacaaagtaccttccaacgaagtttaacagtactgtctagagtcaagggtttcttgtctgagtctgggctgatacccagtgaatccctgaagtgcatgcttgtttgtggttctgatctactccactcttttagcattcctggagtttggattccaggccaggtcaggggcatatgtagagattatggtgtggtttgcattcgcagggagggacaagatgttgacaagataatgtcaaatgatgatattttgagggagaataggggtaacataagaactgtggatgagcttgtaccaaaccaaataagttcaacaagagtaagggattgcatctcaagaggattgtcgataaaatatctgactgcagatgaagtaattgattatattaaagagcagcatctctacttgaactcaaatgacaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

232

Amino Acids

26.08

Weight (kDa)

6.65

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	18 - 199	8.7e-16	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	211
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	2 cut(s)	147, 383
AfaI	GTAC	3 cut(s)	283, 306, 567
AfiI	CCNNNNNNNGG	2 cut(s)	167, 439
AgsI	TTSAA	4 cut(s)	67, 121, 585, 682
AjnI	CCWGG	3 cut(s)	412, 427, 432
AluBI	AGCT	1 cut(s)	562
AluI	AGCT	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	1 cut(s)	667
ApoI	RAATTY	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	679
BciT130I	CCWGG	3 cut(s)	414, 429, 434
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	3 cut(s)	47, 227, 312
BfmI	CTRYAG	1 cut(s)	636
BisI	GCNGC	1 cut(s)	668
BlsI	GCNGC	1 cut(s)	669
BmcAI	AGTACT	1 cut(s)	306
Bme1390I	CCNGG	3 cut(s)	414, 429, 434
BmrFI	CCNGG	3 cut(s)	414, 429, 434
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	3 cut(s)	13, 612, 679
BmuI	ACTGGG	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	263
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 439
Bse1I	ACTGG	2 cut(s)	108, 351
BseBI	CCWGG	3 cut(s)	414, 429, 434
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	2 cut(s)	167, 439
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	108, 351
BseXI	GCAGC	1 cut(s)	679
BshFI	GGCC	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	167, 439
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	498
BsmI	GAATGC	2 cut(s)	408, 471
BsnI	GGCC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	259, 388
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	108, 351
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	2 cut(s)	259, 388
BssNAI	GTATAC	1 cut(s)	212
Bst1107I	GTATAC	1 cut(s)	212
Bst2UI	CCWGG	3 cut(s)	414, 429, 434
Bst4CI	ACNGT	4 cut(s)	216, 304, 309, 553
BstC8I	GCNNGC	2 cut(s)	232, 371
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	562
BstKTI	GATC	2 cut(s)	262, 391
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	259, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	3 cut(s)	414, 429, 434
BstNSI	RCATGY	2 cut(s)	85, 373
BstSCI	CCNGG	3 cut(s)	412, 427, 432
BstSFI	CTRYAG	1 cut(s)	636
BstV1I	GCAGC	1 cut(s)	679
BstZ17I	GTATAC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	232, 371
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	282, 305, 566
CviAII	CATG	2 cut(s)	82, 370
CviJI	RGCY	5 cut(s)	132, 230, 343, 432, 562
CviKI_1	RGCY	5 cut(s)	132, 230, 343, 432, 562
CviQI	GTAC	3 cut(s)	282, 305, 566
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	2 cut(s)	261, 390
DpnII	GATC	2 cut(s)	259, 388
Eco57I	CTGAAG	2 cut(s)	147, 383
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	3 cut(s)	412, 427, 432
EcoT22I	ATGCAT	2 cut(s)	6, 87
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	2 cut(s)	85, 373
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	2 cut(s)	81, 369
FauNDI	CATATG	1 cut(s)	446
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	668
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	668
FspBI	CTAG	3 cut(s)	47, 227, 312
GluI	GCNGC	1 cut(s)	668
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	85, 373
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	4 cut(s)	315, 335, 356, 424
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	2 cut(s)	212, 496
Hpy188I	TCNGA	5 cut(s)	127, 244, 334, 388, 633
Hpy188III	TCNNGA	3 cut(s)	17, 312, 609
Hpy8I	GTNNAC	2 cut(s)	212, 496
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	122, 295
HpyCH4III	ACNGT	4 cut(s)	216, 304, 309, 553
HpyCH4V	TGCA	8 cut(s)	4, 85, 173, 234, 369, 471, 603, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	85, 373
Kzo9I	GATC	2 cut(s)	259, 388
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	3 cut(s)	13, 612, 679
MaeI	CTAG	3 cut(s)	47, 227, 312
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	2 cut(s)	261, 390
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	2 cut(s)	259, 388
MluCI	AATT	2 cut(s)	121, 648
MlyI	GAGTC	2 cut(s)	324, 344
MmeI	TCCRAC	2 cut(s)	78, 313
MnlI	CCTC	6 cut(s)	81, 140, 262, 475, 519, 605
Mph1103I	ATGCAT	2 cut(s)	6, 87
MseI	TTAA	4 cut(s)	12, 165, 299, 660
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	3 cut(s)	414, 429, 434
Mva1269I	GAATGC	2 cut(s)	408, 471
MvaI	CCWGG	3 cut(s)	414, 429, 434
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeI	CATATG	1 cut(s)	446
NdeII	GATC	2 cut(s)	259, 388
NlaIII	CATG	2 cut(s)	85, 373
NsiI	ATGCAT	2 cut(s)	6, 87
NspI	RCATGY	2 cut(s)	85, 373
PaeI	GCATGC	1 cut(s)	373
PctI	GAATGC	2 cut(s)	408, 471
PfeI	GAWTC	2 cut(s)	356, 424
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	669
PleI	GAGTC	2 cut(s)	323, 343
PpsI	GAGTC	2 cut(s)	323, 343
Psp6I	CCWGG	3 cut(s)	412, 427, 432
PspGI	CCWGG	3 cut(s)	412, 427, 432
PsrI	GAACNNNNNNTAC	2 cut(s)	195, 227
PstI	CTGCAG	1 cut(s)	640
RsaI	GTAC	3 cut(s)	283, 306, 567
RsaNI	GTAC	3 cut(s)	282, 305, 566
SaqAI	TTAA	4 cut(s)	12, 165, 299, 660
SatI	GCNGC	1 cut(s)	668
Sau3AI	GATC	2 cut(s)	259, 388
ScaI	AGTACT	1 cut(s)	306
SchI	GAGTC	2 cut(s)	324, 344
ScrFI	CCNGG	3 cut(s)	414, 429, 434
SetI	ASST	5 cut(s)	151, 163, 287, 438, 564
SfaNI	GCATC	3 cut(s)	13, 612, 679
SfcI	CTRYAG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	2 cut(s)	121, 648
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	3 cut(s)	47, 227, 312
StyD4I	CCNGG	3 cut(s)	412, 427, 432
TaaI	ACNGT	4 cut(s)	216, 304, 309, 553
TaqI	TCGA	1 cut(s)	620
TasI	AATT	2 cut(s)	121, 648
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	356, 424
Tru1I	TTAA	4 cut(s)	12, 165, 299, 660
Tru9I	TTAA	4 cut(s)	12, 165, 299, 660
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	1 cut(s)	667
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	121
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	2 cut(s)	85, 373
XmiI	GTMKAC	1 cut(s)	211
XspI	CTAG	3 cut(s)	47, 227, 312
ZrmI	AGTACT	1 cut(s)	306
Zsp2I	ATGCAT	2 cut(s)	6, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.