Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001898.1

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Forward (+)

99995 .. 102104

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgcatcatggtaccattccccaattagctggaaccttgcctttcacttttctcgttctcgtccggctgcgccgcggcgctggcccctgtctctggcggcgccggcgccggcgcatgatggatgcgggtggacgggatatctggtttgtgagagtatctttggctcggaagctgcggtcggagagggatttcatttgcctctctcggtgtacggaggcggctgcatctggggttgggatcagatcggatttggatcccgtggtgtcttgcggcggttggaggggaggtcgggctcgatggatagtaggatcggatcgatgggttgacgggttggtggagggaaacggagcggaggcggatctttgccggatcggagtggggattgctgggcggaatcacgacggtggattgggtgtagcagagccattccggattggtggatcgggatcgctggttggtggtgggttggaggagggcggtcgtgctggcctgtttactggattggattttcgatctggatttgggccatactggtttgggagtttgatggggtgtgggattcttcgctgttggtccatcagcggcgggatggcgttggtggtgagggtccgaccttgggggaactgcggcggcggtggctgtggcgaggtgcagctgctagctttgaccggcggtagcttaggtttcttagaacgtcaagaacatcgagaaaggaggctcagggtgaagggaccagtgaagatgcctaccaaggttctgcacattaccaccaggaagtcaccctatggagaaggtaccaacacatgggacagatttgagttgcgtgggcataagcgtgttattgatctcttcagctctcctgatgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

289

Amino Acids

31.4

Weight (kDa)

10.51

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	239 - 285	1.1e-11	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	11, 794
AccB1I	GGYRCC	4 cut(s)	11, 99, 105, 794
AccB7I	CCANNNNNTGG	1 cut(s)	804
AccBSI	CCGCTC	1 cut(s)	350
AccII	CGCG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	429
AclWI	GGATC	9 cut(s)	245, 248, 261, 316, 321, 366, 377, 448, 454
AcuI	CTGAAG	1 cut(s)	835
AcyI	GRCGYC	2 cut(s)	100, 106
AfaI	GTAC	3 cut(s)	13, 211, 796
AfiI	CCNNNNNNNGG	3 cut(s)	93, 616, 804
AjnI	CCWGG	1 cut(s)	770
AleI	CACNNNNGTG	1 cut(s)	402
AluBI	AGCT	6 cut(s)	29, 172, 655, 662, 678, 855
AluI	AGCT	6 cut(s)	29, 172, 655, 662, 678, 855
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	9 cut(s)	245, 248, 261, 316, 321, 366, 377, 448, 454
Aor13HI	TCCGGA	1 cut(s)	429
AoxI	GGCC	3 cut(s)	82, 487, 524
ApeKI	GCWGC	5 cut(s)	67, 172, 221, 652, 655
Asp718I	GGTACC	2 cut(s)	11, 794
AspLEI	GCGC	5 cut(s)	72, 80, 102, 108, 114
AspS9I	GGNCC	5 cut(s)	83, 524, 573, 607, 731
AsuHPI	GGTGA	3 cut(s)	613, 736, 771
AsuNHI	GCTAGC	1 cut(s)	658
AvaII	GGWCC	3 cut(s)	573, 607, 731
BamHI	GGATCC	1 cut(s)	253
BanI	GGYRCC	4 cut(s)	11, 99, 105, 794
BanII	GRGCYC	1 cut(s)	295
BbvI	GCAGC	5 cut(s)	54, 159, 208, 642, 664
BccI	CCATC	6 cut(s)	112, 291, 312, 541, 583, 584
BciT130I	CCWGG	1 cut(s)	772
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	659
BfoI	RGCGCY	3 cut(s)	81, 103, 109
Bme1390I	CCNGG	1 cut(s)	772
Bme18I	GGWCC	3 cut(s)	573, 607, 731
BmgT120I	GGNCC	5 cut(s)	83, 524, 573, 607, 731
BmiI	GGNNCC	9 cut(s)	13, 34, 85, 101, 107, 255, 608, 732, 796
BmrFI	CCNGG	1 cut(s)	772
BmsI	GCATC	4 cut(s)	13, 112, 233, 732
BmtI	GCTAGC	1 cut(s)	662
Bpu10I	CCTNAGC	2 cut(s)	679, 719
Bsa29I	ATCGAT	1 cut(s)	316
BsaBI	GATNNNNATC	2 cut(s)	252, 445
BsaHI	GRCGYC	2 cut(s)	100, 106
BsaJI	CCNNGG	4 cut(s)	73, 258, 614, 750
BsaWI	WCCGGW	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 616, 804
Bse118I	RCCGGY	3 cut(s)	102, 108, 668
Bse1I	ACTGG	3 cut(s)	502, 536, 734
Bse8I	GATNNNNATC	2 cut(s)	252, 445
BseAI	TCCGGA	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	772
BseCI	ATCGAT	1 cut(s)	316
BseDI	CCNNGG	4 cut(s)	73, 258, 614, 750
BseGI	GGATG	2 cut(s)	127, 594
BseJI	GATNNNNATC	2 cut(s)	252, 445
BseLI	CCNNNNNNNGG	3 cut(s)	93, 616, 804
BseMII	CTCAG	1 cut(s)	733
BseNI	ACTGG	3 cut(s)	502, 536, 734
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	5 cut(s)	54, 159, 208, 642, 664
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	2 cut(s)	671, 743
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	2 cut(s)	179, 481
BshFI	GGCC	3 cut(s)	84, 489, 526
BshNI	GGYRCC	4 cut(s)	11, 99, 105, 794
BshVI	ATCGAT	1 cut(s)	316
BsiEI	CGRYCG	2 cut(s)	179, 481
BsiSI	CCGG	6 cut(s)	64, 103, 109, 367, 430, 669
BslFI	GGGAC	2 cut(s)	744, 821
BslI	CCNNNNNNNGG	3 cut(s)	93, 616, 804
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	744, 821
BsnI	GGCC	3 cut(s)	84, 489, 526
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	429
BspANI	GGCC	3 cut(s)	84, 489, 526
BspCNI	CTCAG	1 cut(s)	732
BspDI	ATCGAT	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	9 cut(s)	13, 34, 85, 101, 107, 255, 608, 732, 796
BspOI	GCTAGC	1 cut(s)	662
BspPI	GGATC	9 cut(s)	245, 248, 261, 316, 321, 366, 377, 448, 454
BspT107I	GGYRCC	4 cut(s)	11, 99, 105, 794
BsrBI	CCGCTC	1 cut(s)	350
BsrFI	RCCGGY	3 cut(s)	102, 108, 668
BsrI	ACTGG	3 cut(s)	502, 536, 734
BssAI	RCCGGY	3 cut(s)	102, 108, 668
BssECI	CCNNGG	4 cut(s)	73, 258, 614, 750
BssNI	GRCGYC	2 cut(s)	100, 106
BssT1I	CCWWGG	2 cut(s)	614, 750
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	854
BstACI	GRCGYC	2 cut(s)	100, 106
BstC8I	GCNNGC	5 cut(s)	82, 104, 110, 487, 660
BstDEI	CTNAG	3 cut(s)	679, 688, 719
BstDSI	CCRYGG	2 cut(s)	73, 258
BstF5I	GGATG	2 cut(s)	127, 594
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	3 cut(s)	81, 103, 109
BstHHI	GCGC	5 cut(s)	72, 80, 102, 108, 114
BstMAI	GTCTC	1 cut(s)	95
BstMCI	CGRYCG	2 cut(s)	179, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 103, 636
BstNI	CCWGG	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	770
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	5 cut(s)	54, 159, 208, 642, 664
BstX2I	RGATCY	2 cut(s)	253, 358
BstXI	CCANNNNNNTGG	1 cut(s)	29
BstYI	RGATCY	2 cut(s)	253, 358
Bsu15I	ATCGAT	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	84, 489, 526
BsuTUI	ATCGAT	1 cut(s)	316
BtgI	CCRYGG	2 cut(s)	73, 258
BtsCI	GGATG	2 cut(s)	127, 594
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	5 cut(s)	82, 104, 110, 487, 660
CfoI	GCGC	5 cut(s)	72, 80, 102, 108, 114
Cfr10I	RCCGGY	3 cut(s)	102, 108, 668
Cfr13I	GGNCC	5 cut(s)	83, 524, 573, 607, 731
Cfr42I	CCGCGG	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	316
Csp6I	GTAC	3 cut(s)	12, 210, 795
CviAII	CATG	3 cut(s)	8, 115, 804
CviQI	GTAC	3 cut(s)	12, 210, 795
DdeI	CTNAG	3 cut(s)	679, 688, 719
DinI	GGCGCC	2 cut(s)	101, 107
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
EciI	GGCGGA	2 cut(s)	371, 406
Eco130I	CCWWGG	2 cut(s)	614, 750
Eco24I	GRGCYC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	3 cut(s)	573, 607, 731
Eco57I	CTGAAG	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	770
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	614, 750
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	295
EgeI	GGCGCC	2 cut(s)	101, 107
EheI	GGCGCC	2 cut(s)	101, 107
ErhI	CCWWGG	2 cut(s)	614, 750
FaeI	CATG	3 cut(s)	11, 118, 807
FaiI	YATR	6 cut(s)	9, 116, 529, 786, 805, 831
FaqI	GGGAC	2 cut(s)	744, 821
FatI	CATG	3 cut(s)	7, 114, 803
FauI	CCCGC	2 cut(s)	118, 578
FokI	GGATG	2 cut(s)	134, 601
FriOI	GRGCYC	1 cut(s)	295
FspBI	CTAG	1 cut(s)	659
GlaI	GCGC	5 cut(s)	71, 79, 101, 107, 113
GsaI	CCCAGC	1 cut(s)	390
HaeII	RGCGCY	3 cut(s)	81, 103, 109
HaeIII	GGCC	3 cut(s)	84, 489, 526
HapII	CCGG	6 cut(s)	64, 103, 109, 367, 430, 669
HhaI	GCGC	5 cut(s)	72, 80, 102, 108, 114
Hin1I	GRCGYC	2 cut(s)	100, 106
Hin1II	CATG	3 cut(s)	11, 118, 807
Hin6I	GCGC	5 cut(s)	70, 78, 100, 106, 112
HinP1I	GCGC	5 cut(s)	70, 78, 100, 106, 112
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	394, 559
HpaII	CCGG	6 cut(s)	64, 103, 109, 367, 430, 669
HphI	GGTGA	3 cut(s)	613, 736, 771
Hpy166II	GTNNAC	4 cut(s)	131, 210, 325, 495
Hpy188I	TCNGA	7 cut(s)	168, 181, 242, 247, 313, 374, 611
Hpy188III	TCNNGA	7 cut(s)	398, 430, 444, 516, 698, 707, 860
Hpy8I	GTNNAC	4 cut(s)	131, 210, 325, 495
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	721, 785
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	4 cut(s)	4, 224, 652, 760
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 103, 636
HpyF3I	CTNAG	3 cut(s)	679, 688, 719
HpySE526I	ACGT	1 cut(s)	694
Hsp92I	GRCGYC	2 cut(s)	100, 106
Hsp92II	CATG	3 cut(s)	11, 118, 807
HspAI	GCGC	5 cut(s)	70, 78, 100, 106, 112
KasI	GGCGCC	2 cut(s)	99, 105
Kpn2I	TCCGGA	1 cut(s)	429
KpnI	GGTACC	2 cut(s)	15, 798
KroI	GCCGGC	2 cut(s)	102, 108
KroNI	GCCGGC	2 cut(s)	104, 110
KspI	CCGCGG	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	5 cut(s)	54, 159, 208, 642, 664
LweI	GCATC	4 cut(s)	13, 112, 233, 732
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	1 cut(s)	777
MbiI	CCGCTC	1 cut(s)	350
MboII	GAAGA	3 cut(s)	554, 751, 841
MflI	RGATCY	2 cut(s)	253, 358
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	23
Mly113I	GGCGCC	2 cut(s)	100, 106
MmeI	TCCRAC	4 cut(s)	159, 257, 447, 634
Mph1103I	ATGCAT	1 cut(s)	6
MreI	CGCCGGCG	2 cut(s)	102, 108
MroI	TCCGGA	1 cut(s)	429
MroNI	GCCGGC	2 cut(s)	102, 108
MslI	CAYNNNNRTG	2 cut(s)	402, 834
MspA1I	CMGCKG	3 cut(s)	75, 582, 655
MspI	CCGG	6 cut(s)	64, 103, 109, 367, 430, 669
MspR9I	CCNGG	1 cut(s)	772
MvaI	CCWGG	1 cut(s)	772
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	81, 103, 636
NaeI	GCCGGC	2 cut(s)	104, 110
NarI	GGCGCC	2 cut(s)	100, 106
NgoMIV	GCCGGC	2 cut(s)	102, 108
NheI	GCTAGC	1 cut(s)	658
NlaIII	CATG	3 cut(s)	11, 118, 807
NlaIV	GGNNCC	9 cut(s)	13, 34, 85, 101, 107, 255, 608, 732, 796
NmuCI	GTSAC	1 cut(s)	777
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	402
PdiI	GCCGGC	2 cut(s)	104, 110
PfeI	GAWTC	2 cut(s)	394, 559
PflMI	CCANNNNNTGG	1 cut(s)	804
PluTI	GGCGCC	2 cut(s)	103, 109
Psp6I	CCWGG	1 cut(s)	770
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	9 cut(s)	13, 34, 85, 101, 107, 255, 608, 732, 796
PspPI	GGNCC	5 cut(s)	83, 524, 573, 607, 731
PsuI	RGATCY	2 cut(s)	253, 358
PvuII	CAGCTG	1 cut(s)	655
RsaI	GTAC	3 cut(s)	13, 211, 796
RsaNI	GTAC	3 cut(s)	12, 210, 795
RseI	CAYNNNNRTG	2 cut(s)	402, 834
SacII	CCGCGG	1 cut(s)	76
Sau96I	GGNCC	5 cut(s)	83, 524, 573, 607, 731
ScrFI	CCNGG	1 cut(s)	772
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	4 cut(s)	13, 112, 233, 732
SfoI	GGCGCC	2 cut(s)	101, 107
Sfr303I	CCGCGG	1 cut(s)	76
SgrAI	CRCCGGYG	2 cut(s)	102, 108
SgrBI	CCGCGG	1 cut(s)	76
SinI	GGWCC	3 cut(s)	573, 607, 731
SmiMI	CAYNNNNRTG	2 cut(s)	402, 834
Sse9I	AATT	1 cut(s)	23
SspDI	GGCGCC	2 cut(s)	99, 105
SspMI	CTAG	1 cut(s)	659
StyD4I	CCNGG	1 cut(s)	770
StyI	CCWWGG	2 cut(s)	614, 750
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	4 cut(s)	295, 316, 511, 706
TasI	AATT	1 cut(s)	23
TauI	GCSGC	8 cut(s)	75, 78, 100, 221, 273, 585, 630, 633
TfiI	GAWTC	2 cut(s)	394, 559
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	1 cut(s)	777
TseI	GCWGC	5 cut(s)	67, 172, 221, 652, 655
Tsp45I	GTSAC	1 cut(s)	777
TspDTI	ATGAA	1 cut(s)	181
TspGWI	ACGGA	2 cut(s)	227, 360
TspRI	CASTG	1 cut(s)	741
Van91I	CCANNNNNTGG	1 cut(s)	804
VpaK11BI	GGWCC	3 cut(s)	573, 607, 731
XspI	CTAG	1 cut(s)	659
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.