Rmu_sc0001977.1_g000001

YrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001977.1
OG0006151
Physical Location & Seq
Forward (+)
1 .. 1713
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 773 bp
gcctgcgcagattgggcttagtgcctatagtccgcagccggagattgaagcgcggcgttgggcagaaaatggcttggagcttggagaaagtggacgccgccggcgttgaaatttctcagctgggggttgttcgtccggcgactgaagctcataccgaggaggctgttgaagctcttagagctggaaaagtcattgcagtccccacggatacgctatacggttttgcctgtgatgcttgttcattggaagcagttcatcggatttatgagattaaagggcgaaatcatactagtcctctcgcaatttgtgttggggatgtgccggatattcagcgctttgctgtcactgatcacttgcctcatggcttgcttgagtctctccttccaggacctgttactcttgtactgagacgaggggagtccagtatgcttgagaagtctttgaaccctggattggaaagtataggagtcagagttccggactgtaacttcatcagggggattgcccgtggactggggagtgcattggcccttaccagtgcaaatctaagtgggcagccaagtagtgtttgcatcaaagatttcgagaacctctggcaacattgtgcgtatgtttatcagggtggtgtgcttccttcaggtcgtgcaggctcaacagttgtggaccttgccaggctaggcaagttcaagattcttagacctggaagtgcaagggaagagactgttgctattcttgaaaggcattctcttgaagaagaaggatcatctacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

256

Amino Acids

27.5

Weight (kDa)

8.27

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 56 - 234 2.8e-44 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 7
AccII CGCG 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 477
AciI CCGC 3 cut(s) 33, 53, 98
AclWI GGATC 1 cut(s) 768
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 2 cut(s) 164, 620
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 404
AfeI AGCGCT 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 453, 513
AgsI TTSAA 7 cut(s) 48, 109, 169, 444, 687, 736, 751
AhlI ACTAGT 1 cut(s) 289
AjnI CCWGG 4 cut(s) 384, 447, 670, 699
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 5 cut(s) 80, 120, 148, 172, 181
AluI AGCT 5 cut(s) 80, 120, 148, 172, 181
Alw26I GTCTC 3 cut(s) 380, 402, 712
AlwI GGATC 1 cut(s) 768
AlwNI CAGNNNCTG 1 cut(s) 391
Aor13HI TCCGGA 1 cut(s) 477
Aor51HI AGCGCT 1 cut(s) 334
AoxI GGCC 1 cut(s) 527
ApeKI GCWGC 2 cut(s) 35, 555
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 3 cut(s) 8, 53, 335
AspS9I GGNCC 3 cut(s) 388, 528, 663
AvaII GGWCC 2 cut(s) 388, 663
BbvI GCAGC 2 cut(s) 47, 567
BciT130I CCWGG 4 cut(s) 386, 449, 672, 701
BciVI GTATCC 1 cut(s) 201
BclI TGATCA 1 cut(s) 348
BcoDI GTCTC 3 cut(s) 380, 402, 712
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 2 cut(s) 290, 676
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 336
BfuI GTATCC 1 cut(s) 201
BisI GCNGC 4 cut(s) 36, 54, 98, 556
BlsI GCNGC 4 cut(s) 37, 55, 99, 557
Bme1390I CCNGG 4 cut(s) 386, 449, 672, 701
Bme18I GGWCC 2 cut(s) 388, 663
BmgT120I GGNCC 3 cut(s) 388, 528, 663
BmrFI CCNGG 4 cut(s) 386, 449, 672, 701
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 2 cut(s) 222, 581
BmuI ACTGGG 1 cut(s) 523
BpuEI CTTGAG 2 cut(s) 391, 451
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 4 cut(s) 155, 203, 447, 507
BsaWI WCCGGW 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 453, 513
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 3 cut(s) 422, 518, 536
Bse3DI GCAATG 1 cut(s) 191
BseAI TCCGGA 1 cut(s) 477
BseBI CCWGG 4 cut(s) 386, 449, 672, 701
BseDI CCNNGG 4 cut(s) 155, 203, 447, 507
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 453, 513
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 130, 397
BseNI ACTGG 3 cut(s) 422, 518, 536
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 47, 567
BseYI CCCAGC 1 cut(s) 120
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 529
BsiSI CCGG 5 cut(s) 39, 101, 136, 322, 478
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 453, 513
BsmAI GTCTC 3 cut(s) 380, 402, 712
BsmBI CGTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 184
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 1 cut(s) 529
Bsp13I TCCGGA 1 cut(s) 477
Bsp143I GATC 2 cut(s) 348, 760
BspACI CCGC 3 cut(s) 33, 53, 98
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 2 cut(s) 129, 398
BspEI TCCGGA 1 cut(s) 477
BspFNI CGCG 1 cut(s) 53
BspPI GGATC 1 cut(s) 768
BsrDI GCAATG 1 cut(s) 191
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 3 cut(s) 422, 518, 536
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 4 cut(s) 155, 203, 447, 507
BssMI GATC 2 cut(s) 348, 760
BssNI GRCGYC 1 cut(s) 95
Bst2UI CCWGG 4 cut(s) 386, 449, 672, 701
Bst4CI ACNGT 4 cut(s) 220, 484, 657, 723
Bst6I CTCTTC 1 cut(s) 710
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 4 cut(s) 4, 102, 367, 648
BstDEI CTNAG 6 cut(s) 18, 116, 175, 406, 547, 694
BstDSI CCRYGG 2 cut(s) 203, 507
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 3 cut(s) 8, 53, 335
BstKTI GATC 2 cut(s) 351, 763
BstMAI GTCTC 3 cut(s) 380, 402, 712
BstMBI GATC 2 cut(s) 348, 760
BstMWI GCNNNNNNNGC 5 cut(s) 14, 145, 169, 178, 232
BstNI CCWGG 4 cut(s) 386, 449, 672, 701
BstSCI CCNGG 4 cut(s) 384, 447, 670, 699
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 47, 567
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 529
BtgI CCRYGG 2 cut(s) 203, 507
BtsCI GGATG 1 cut(s) 321
BtsIMutI CAGTG 2 cut(s) 344, 543
Cac8I GCNNGC 4 cut(s) 4, 102, 367, 648
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 3 cut(s) 8, 53, 335
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 3 cut(s) 388, 528, 663
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 641, 676
CviAII CATG 1 cut(s) 361
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 6 cut(s) 18, 116, 175, 406, 547, 694
DpnI GATC 2 cut(s) 350, 762
DpnII GATC 2 cut(s) 348, 760
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
Eco47I GGWCC 2 cut(s) 388, 663
Eco47III AGCGCT 1 cut(s) 334
Eco57I CTGAAG 2 cut(s) 164, 620
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 4 cut(s) 384, 447, 670, 699
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 1 cut(s) 364
FaiI YATR 9 cut(s) 28, 152, 216, 266, 287, 362, 427, 463, 611
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 360
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 4 cut(s) 36, 54, 98, 556
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 4 cut(s) 36, 54, 98, 556
FspBI CTAG 2 cut(s) 290, 676
FspI TGCGCA 1 cut(s) 7
GlaI GCGC 3 cut(s) 7, 52, 334
GluI GCNGC 4 cut(s) 36, 54, 98, 556
GsaI CCCAGC 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 1 cut(s) 529
HapII CCGG 5 cut(s) 39, 101, 136, 322, 478
HgaI GACGC 1 cut(s) 103
HhaI GCGC 3 cut(s) 8, 53, 335
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 3 cut(s) 6, 51, 333
HinP1I GCGC 3 cut(s) 6, 51, 333
HinfI GANTC 4 cut(s) 373, 418, 467, 690
HpaII CCGG 5 cut(s) 39, 101, 136, 322, 478
Hpy166II GTNNAC 3 cut(s) 93, 511, 663
Hpy188I TCNGA 2 cut(s) 260, 472
Hpy188III TCNNGA 5 cut(s) 478, 585, 687, 733, 748
Hpy8I GTNNAC 3 cut(s) 93, 511, 663
HpyAV CCTTC 3 cut(s) 391, 644, 751
HpyCH4III ACNGT 4 cut(s) 220, 484, 657, 723
HpyCH4V TGCA 6 cut(s) 196, 523, 541, 572, 646, 709
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 145, 169, 178, 232
HpyF3I CTNAG 6 cut(s) 18, 116, 175, 406, 547, 694
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 3 cut(s) 6, 51, 333
Kpn2I TCCGGA 1 cut(s) 477
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 2 cut(s) 348, 760
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 2 cut(s) 47, 567
LweI GCATC 2 cut(s) 222, 581
MaeI CTAG 2 cut(s) 290, 676
MaeIII GTNAC 3 cut(s) 342, 393, 484
MalI GATC 2 cut(s) 350, 762
MboI GATC 2 cut(s) 348, 760
MboII GAAGA 3 cut(s) 727, 763, 766
MluCI AATT 2 cut(s) 110, 302
MlyI GAGTC 3 cut(s) 382, 427, 476
MnlI CCTC 6 cut(s) 150, 153, 305, 368, 406, 601
MreI CGCCGGCG 1 cut(s) 100
MroI TCCGGA 1 cut(s) 477
MroNI GCCGGC 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 2 cut(s) 272, 771
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 5 cut(s) 39, 101, 136, 322, 478
MspR9I CCNGG 4 cut(s) 386, 449, 672, 701
Mva1269I GAATGC 1 cut(s) 741
MvaI CCWGG 4 cut(s) 386, 449, 672, 701
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 5 cut(s) 14, 145, 169, 178, 232
NaeI GCCGGC 1 cut(s) 102
NdeII GATC 2 cut(s) 348, 760
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 342
NsbI TGCGCA 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PctI GAATGC 1 cut(s) 741
PdiI GCCGGC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 690
PfoI TCCNGGA 1 cut(s) 384
PkrI GCNGC 4 cut(s) 37, 55, 99, 557
PleI GAGTC 3 cut(s) 381, 426, 475
PpsI GAGTC 3 cut(s) 381, 426, 475
PpuMI RGGWCCY 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 4 cut(s) 384, 447, 670, 699
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 4 cut(s) 384, 447, 670, 699
PspPI GGNCC 3 cut(s) 388, 528, 663
PspPPI RGGWCCY 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 391
PvuII CAGCTG 1 cut(s) 120
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 2 cut(s) 272, 771
SatI GCNGC 4 cut(s) 36, 54, 98, 556
Sau3AI GATC 2 cut(s) 348, 760
Sau96I GGNCC 3 cut(s) 388, 528, 663
SchI GAGTC 3 cut(s) 382, 427, 476
ScrFI CCNGG 4 cut(s) 386, 449, 672, 701
SfaNI GCATC 2 cut(s) 222, 581
SfcI CTRYAG 1 cut(s) 26
SgrAI CRCCGGYG 1 cut(s) 100
SinI GGWCC 2 cut(s) 388, 663
SmlI CTYRAG 2 cut(s) 370, 430
SmoI CTYRAG 2 cut(s) 370, 430
SpeI ACTAGT 1 cut(s) 289
Sse9I AATT 2 cut(s) 110, 302
SsiI CCGC 3 cut(s) 33, 53, 98
SspMI CTAG 2 cut(s) 290, 676
StyD4I CCNGG 4 cut(s) 384, 447, 670, 699
TaaI ACNGT 4 cut(s) 220, 484, 657, 723
TaqI TCGA 1 cut(s) 584
TasI AATT 2 cut(s) 110, 302
TatI WGTACW 1 cut(s) 402
TauI GCSGC 2 cut(s) 56, 100
TfiI GAWTC 1 cut(s) 690
Tru1I TTAA 2 cut(s) 272, 771
Tru9I TTAA 2 cut(s) 272, 771
TscAI CASTG 2 cut(s) 351, 543
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 2 cut(s) 35, 555
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 3 cut(s) 230, 244, 480
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 2 cut(s) 351, 543
VpaK11BI GGWCC 2 cut(s) 388, 663
XapI RAATTY 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 2 cut(s) 290, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.