Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002067.1

Orthogroup ID

OG0014826

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2110

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002067.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgctcaactcgcaggaggaagaccatgttgaactgagcataaacccagatttcccgccagattaccacagttacccaagttactcaggccccaaaaatggccgaattgatgaagggaaatcggaaccttcgagtattgagagagcacgctcagaatcttcaccactactcgccgctatatgggaaaagccgtcgacggttaagggaatcttcgcagatgtttcaaagtgggataagatctttataacttcatgcataattgcagtcttgttggatccattgttcttttacattccatatatccatgaagataacaagtgccttggaaaagacaagactttggggattgcagctattcttctgcgctcactcacagatatcactttcatagtgaatattacatatcagattcgtgagtggattaaaactggttccattaaaatccagaaagctggtctaccctccaaggatgtagaagatcaaagaccaaccatagtctcgggagactcgattgacaaaggagagtgcactcaatttgctgaggaagtcgtagggatatttagccgaacaaaaaagaaaatagctggggcaaaaaataagatagctcagaagttgcagtggttgaccctccccgtgtttattgacattcttgctgttcttcccctcccacaagtgtttatagtatatgttttcttcgaaatcagtggctcaggatatttggattatagacatatgatgaacctctttcttcttggtcaatatgtgcctaggatttttcgaatttatttatcgtctgcagaatttacaaaaactagtggaatatgggttaaaggtgcattcaatttttttctctacatccttgcgagtcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

290

Amino Acids

32.8

Weight (kDa)

6.96

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014826)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G312600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336901
rosa_laevigata	RLG00000029326
rosa_multiflora	Rmu_sc0002067.1_g000001 Rmu_sc0002798.1_g000007 Rmu_sc0003688.1_g000007 Rmu_sc0004920.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278740 Rroxscaffold_4G00278780 Rroxscaffold_4G00315270
rosa_rugosa	Rorug01G0128700
rosa_samantha	Rh1CG140800 Rh1CG422100 Rh1CG422400 Rh1DG156700
rosa_wichuraiana	Rw1G012090 Rw1G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccI	GTMKAC	2 cut(s)	194, 457
AciI	CCGC	2 cut(s)	56, 174
AclWI	GGATC	2 cut(s)	269, 282
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	780, 800
AfiI	CCNNNNNNNGG	2 cut(s)	98, 180
AgsI	TTSAA	3 cut(s)	32, 225, 841
AhlI	ACTAGT	1 cut(s)	812
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	353, 452, 584, 605
AluI	AGCT	4 cut(s)	353, 452, 584, 605
Alw21I	GWGCWC	2 cut(s)	148, 530
Alw26I	GTCTC	2 cut(s)	498, 502
Alw44I	GTGCAC	1 cut(s)	526
AlwI	GGATC	2 cut(s)	269, 282
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	2 cut(s)	88, 100
ApaLI	GTGCAC	1 cut(s)	526
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	780, 800
AspA2I	CCTAGG	1 cut(s)	767
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	153
AsuII	TTCGAA	2 cut(s)	696, 778
AvaI	CYCGRG	1 cut(s)	499
AvrII	CCTAGG	1 cut(s)	767
BaeGI	GKGCMC	1 cut(s)	530
BamHI	GGATCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	148, 530
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	498, 502
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	2 cut(s)	768, 813
BfmI	CTRYAG	1 cut(s)	795
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	2 cut(s)	174, 351
BlnI	CCTAGG	1 cut(s)	767
BlsI	GCNGC	2 cut(s)	175, 352
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	4 cut(s)	91, 126, 276, 433
BpiI	GAAGAC	1 cut(s)	27
Bpu10I	CCTNAGC	2 cut(s)	540, 709
Bpu14I	TTCGAA	2 cut(s)	696, 778
BsaJI	CCNNGG	3 cut(s)	322, 465, 767
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 180
Bse1I	ACTGG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	322, 465, 767
BseGI	GGATG	2 cut(s)	475, 855
BseLI	CCNNNNNNNGG	2 cut(s)	98, 180
BseMII	CTCAG	6 cut(s)	26, 99, 165, 531, 620, 723
BseNI	ACTGG	1 cut(s)	433
BseSI	GKGCMC	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	584
BshFI	GGCC	2 cut(s)	90, 102
BsiHKAI	GWGCWC	2 cut(s)	148, 530
BsiHKCI	CYCGRG	1 cut(s)	499
BslI	CCNNNNNNNGG	2 cut(s)	98, 180
BsmAI	GTCTC	2 cut(s)	498, 502
BsmI	GAATGC	1 cut(s)	836
BsnI	GGCC	2 cut(s)	90, 102
BsoBI	CYCGRG	1 cut(s)	499
Bsp119I	TTCGAA	2 cut(s)	696, 778
Bsp1286I	GDGCHC	2 cut(s)	148, 530
Bsp143I	GATC	3 cut(s)	237, 274, 478
BspACI	CCGC	2 cut(s)	56, 174
BspANI	GGCC	2 cut(s)	90, 102
BspCNI	CTCAG	6 cut(s)	27, 98, 164, 532, 619, 722
BspLI	GGNNCC	4 cut(s)	91, 126, 276, 433
BspMAI	CTGCAG	1 cut(s)	799
BspPI	GGATC	2 cut(s)	269, 282
BspT104I	TTCGAA	2 cut(s)	696, 778
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	322, 465, 767
BssMI	GATC	3 cut(s)	237, 274, 478
BssT1I	CCWWGG	3 cut(s)	322, 465, 767
Bst4CI	ACNGT	2 cut(s)	71, 199
BstBI	TTCGAA	2 cut(s)	696, 778
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	6 cut(s)	35, 85, 151, 540, 606, 709
BstF5I	GGATG	2 cut(s)	475, 855
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	3 cut(s)	240, 277, 481
BstMAI	GTCTC	2 cut(s)	498, 502
BstMBI	GATC	3 cut(s)	237, 274, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	795
BstSLI	GKGCMC	1 cut(s)	530
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	237, 274
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	2 cut(s)	237, 274
BsuRI	GGCC	2 cut(s)	90, 102
BtsCI	GGATG	2 cut(s)	475, 855
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	2 cut(s)	623, 709
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	3 cut(s)	26, 252, 305
CviJI	RGCY	9 cut(s)	90, 102, 190, 353, 452, 564, 584, 605, 708
CviKI_1	RGCY	9 cut(s)	90, 102, 190, 353, 452, 564, 584, 605, 708
DdeI	CTNAG	6 cut(s)	35, 85, 151, 540, 606, 709
DpnI	GATC	3 cut(s)	239, 276, 480
DpnII	GATC	3 cut(s)	237, 274, 478
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	3 cut(s)	322, 465, 767
Eco32I	GATATC	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	499
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	3 cut(s)	322, 465, 767
EcoT22I	ATGCAT	1 cut(s)	257
ErhI	CCWWGG	3 cut(s)	322, 465, 767
FaeI	CATG	3 cut(s)	29, 255, 308
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	3 cut(s)	25, 251, 304
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	732
FblI	GTMKAC	2 cut(s)	194, 457
Fnu4HI	GCNGC	2 cut(s)	174, 351
FokI	GGATG	2 cut(s)	482, 842
Fsp4HI	GCNGC	2 cut(s)	174, 351
FspBI	CTAG	2 cut(s)	768, 813
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	2 cut(s)	174, 351
GsaI	CCCAGC	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	90, 102
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	29, 255, 308
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	2 cut(s)	195, 624
HindII	GTYRAC	2 cut(s)	195, 624
HinfI	GANTC	5 cut(s)	155, 207, 409, 506, 865
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	4 cut(s)	195, 458, 528, 624
Hpy188I	TCNGA	4 cut(s)	124, 154, 408, 609
Hpy188III	TCNNGA	4 cut(s)	413, 445, 501, 711
Hpy8I	GTNNAC	4 cut(s)	195, 458, 528, 624
Hpy99I	CGWCG	2 cut(s)	196, 199
HpyAV	CCTTC	2 cut(s)	107, 138
HpyCH4III	ACNGT	2 cut(s)	71, 199
HpyCH4V	TGCA	7 cut(s)	255, 263, 350, 528, 616, 797, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	6 cut(s)	35, 85, 151, 540, 606, 709
Hsp92II	CATG	3 cut(s)	29, 255, 308
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	237, 274, 478
LpnPI	CCDG	8 cut(s)	60, 72, 72, 414, 438, 458, 570, 696
Lsp1109I	GCAGC	1 cut(s)	362
MaeI	CTAG	2 cut(s)	768, 813
MaeIII	GTNAC	2 cut(s)	71, 80
MalI	GATC	3 cut(s)	239, 276, 480
MboI	GATC	3 cut(s)	237, 274, 478
MboII	GAAGA	9 cut(s)	32, 150, 202, 320, 350, 488, 650, 685, 740
MflI	RGATCY	2 cut(s)	237, 274
MhlI	GDGCHC	2 cut(s)	148, 530
MluCI	AATT	6 cut(s)	105, 258, 533, 780, 800, 841
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	6 cut(s)	10, 472, 535, 638, 674, 752
Mph1103I	ATGCAT	1 cut(s)	257
MseI	TTAA	4 cut(s)	201, 423, 438, 828
Mva1269I	GAATGC	1 cut(s)	836
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeI	CATATG	1 cut(s)	732
NdeII	GATC	3 cut(s)	237, 274, 478
NlaIII	CATG	3 cut(s)	29, 255, 308
NlaIV	GGNNCC	4 cut(s)	91, 126, 276, 433
NsiI	ATGCAT	1 cut(s)	257
NspV	TTCGAA	2 cut(s)	696, 778
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 506
PctI	GAATGC	1 cut(s)	836
PfeI	GAWTC	3 cut(s)	155, 207, 409
PkrI	GCNGC	2 cut(s)	175, 352
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PsiI	TTATAA	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	584
PspN4I	GGNNCC	4 cut(s)	91, 126, 276, 433
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	799
PsuI	RGATCY	2 cut(s)	237, 274
SalI	GTCGAC	1 cut(s)	193
SaqAI	TTAA	4 cut(s)	201, 423, 438, 828
SatI	GCNGC	2 cut(s)	174, 351
Sau3AI	GATC	3 cut(s)	237, 274, 478
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	148, 530
SetI	ASST	7 cut(s)	130, 355, 454, 586, 607, 744, 835
SfcI	CTRYAG	1 cut(s)	795
SfuI	TTCGAA	2 cut(s)	696, 778
SgrDI	CGTCGACG	1 cut(s)	193
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	6 cut(s)	105, 258, 533, 780, 800, 841
SsiI	CCGC	2 cut(s)	56, 174
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	768, 813
StyI	CCWWGG	3 cut(s)	322, 465, 767
TaaI	ACNGT	2 cut(s)	71, 199
TaqI	TCGA	5 cut(s)	131, 194, 509, 696, 778
TasI	AATT	6 cut(s)	105, 258, 533, 780, 800, 841
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	3 cut(s)	155, 207, 409
Tru1I	TTAA	4 cut(s)	201, 423, 438, 828
Tru9I	TTAA	4 cut(s)	201, 423, 438, 828
TscAI	CASTG	2 cut(s)	623, 709
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	5 cut(s)	126, 240, 321, 376, 752
TspRI	CASTG	2 cut(s)	623, 709
VneI	GTGCAC	1 cut(s)	526
XapI	RAATTY	2 cut(s)	780, 800
XmaJI	CCTAGG	1 cut(s)	767
XmiI	GTMKAC	2 cut(s)	194, 457
XspI	CTAG	2 cut(s)	768, 813
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.