Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003688.1

Orthogroup ID

OG0014826

Physical Location & Seq

Genomic Coordinates Reverse (-)

27920 .. 30563

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003688.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

atgccgttttgcgaagtcgcgtcgccgaggaatgccgccgcagccgacgccaagctcaacgacgccggaaccaaaatttactaccggacttacggccgcgggcccaccaaggtcctcctgatcatcggattggcgggaactcacgattcgtgggggccacagatacaggggctgacggggacggtgacggcgaacgacgatgatagggcggcggaggagtgtggcgacaatgaggctggttttagcggcggagggatcgaggtgtgtgcgtttgataatcggggcatgggtcggagctccgtgccggtgaaaaagtcagaatatacaacaagaacaatggcgaaggatgcaattgctttgatggatcatttggggtggaaacaagcgcatgttttcgggcattcaatgggagctatgatagcttgcaagttagcagcgatggtgcccgacagagttttgtcattggctctgctcaatgtgaccggaggaggtttcgagtgtttaccaaggctcgaccgccaaacgttatctattgctatccgatttttaaaggcaaagacgcctgagcaaagagcagctgttgacttggacacacactattcaaaggggtatcttgaggaatatgttggatccaacacaagaagggcaattttataccaagaatatgtaaaaggtatatcagcaactgggatgcagtctaaccatggttttgaaggtcaactgaatgcgtgctggacacataaaatgacaccaactgaaattgaaaagatccgctctggtggatttcttgtttcagagccgatgctcaaagatgctaatccaaaagtggtgaaaatgatctgcgactatctgaagccggtgatgtatgtggagaagagcagtatctttcaagccggagaaccactcgacatgatgcttttcataacgcaaggcactgtttggacctattcgagtagtagtacaagtgatgatacttctctaacaggaaaacaaaaaatgggtagtgcttctccaataatgatcaccaaggcactcaaggaaggcaattcttatggagttgaacaacttctacgttgggtagcagtacccgacgagcatttctccaaccttccttgcctgaacgagaatgtgagatctcattcaaaagtggaaggctttacactcatggccagcgacttgagaaaggtagccatcaaatgccaaggcatttggaacttcatcaatgcccccaatcctcaagaaagagaggaggtggcacgtactacgatagccgcagcagtccgtcgtttccgaaatcagctacaagcaccaaagaagtccggatcaaagccgccggcagttggggctcagaactcgccaataaacatcgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

457

Amino Acids

49.86

Weight (kDa)

8.7

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014826)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G312600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336901
rosa_laevigata	RLG00000029326
rosa_multiflora	Rmu_sc0002067.1_g000001 Rmu_sc0002798.1_g000007 Rmu_sc0003688.1_g000007 Rmu_sc0004920.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278740 Rroxscaffold_4G00278780 Rroxscaffold_4G00315270
rosa_rugosa	Rorug01G0128700
rosa_samantha	Rh1CG140800 Rh1CG422100 Rh1CG422400 Rh1DG156700
rosa_wichuraiana	Rw1G012090 Rw1G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	774
AccII	CGCG	2 cut(s)	20, 99
AccIII	TCCGGA	1 cut(s)	1319
AclI	AACGTT	1 cut(s)	524
AclWI	GGATC	6 cut(s)	263, 372, 624, 637, 763, 1330
AcoI	YGGCCR	2 cut(s)	94, 1167
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	872
AcyI	GRCGYC	3 cut(s)	48, 63, 560
AfaI	GTAC	3 cut(s)	961, 1086, 1261
AfiI	CCNNNNNNNGG	1 cut(s)	1340
AgsI	TTSAA	7 cut(s)	405, 603, 713, 764, 890, 1061, 1143
AluBI	AGCT	6 cut(s)	55, 297, 413, 422, 578, 1300
AluI	AGCT	6 cut(s)	55, 297, 413, 422, 578, 1300
Alw21I	GWGCWC	1 cut(s)	299
AlwI	GGATC	6 cut(s)	263, 372, 624, 637, 763, 1330
AlwNI	CAGNNNCTG	2 cut(s)	172, 686
Aor13HI	TCCGGA	1 cut(s)	1319
AoxI	GGCC	4 cut(s)	94, 101, 155, 1167
ApaI	GGGCCC	1 cut(s)	105
ApeKI	GCWGC	4 cut(s)	41, 434, 575, 1274
ApoI	RAATTY	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	1065
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	5 cut(s)	101, 102, 112, 155, 942
AsuHPI	GGTGA	5 cut(s)	196, 319, 841, 871, 1015
AvaII	GGWCC	2 cut(s)	112, 942
BaeGI	GKGCMC	2 cut(s)	105, 447
BalI	TGGCCA	1 cut(s)	1169
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	3 cut(s)	105, 299, 1348
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	53, 446, 587, 1286
BccI	CCATC	3 cut(s)	355, 433, 1199
BceAI	ACGGC	2 cut(s)	109, 204
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BclI	TGATCA	2 cut(s)	120, 1020
BglII	AGATCT	1 cut(s)	1133
Bme18I	GGWCC	2 cut(s)	112, 942
BmgT120I	GGNCC	5 cut(s)	101, 102, 112, 155, 942
BmiI	GGNNCC	5 cut(s)	70, 103, 156, 444, 631
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	5 cut(s)	337, 681, 792, 802, 903
BmuI	ACTGGG	1 cut(s)	696
BplI	GAGNNNNNCTC	4 cut(s)	888, 920, 1085, 1117
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	4 cut(s)	635, 1019, 1198, 1221
BsaAI	YACGTR	1 cut(s)	1259
BsaBI	GATNNNNATC	1 cut(s)	816
BsaHI	GRCGYC	3 cut(s)	48, 63, 560
BsaJI	CCNNGG	7 cut(s)	26, 97, 108, 506, 703, 1026, 1201
BsaWI	WCCGGW	3 cut(s)	84, 482, 1319
Bsc4I	CCNNNNNNNGG	1 cut(s)	1340
Bse118I	RCCGGY	3 cut(s)	304, 856, 1333
Bse1I	ACTGG	1 cut(s)	691
Bse8I	GATNNNNATC	1 cut(s)	816
BseAI	TCCGGA	1 cut(s)	1319
BseDI	CCNNGG	7 cut(s)	26, 97, 108, 506, 703, 1026, 1201
BseGI	GGATG	2 cut(s)	352, 696
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	1 cut(s)	1340
BseMII	CTCAG	2 cut(s)	555, 1361
BseNI	ACTGG	1 cut(s)	691
BseRI	GAGGAG	3 cut(s)	230, 501, 1262
BseSI	GKGCMC	2 cut(s)	105, 447
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	4 cut(s)	53, 446, 587, 1286
Bsh1236I	CGCG	2 cut(s)	20, 99
Bsh1285I	CGRYCG	2 cut(s)	97, 517
BshFI	GGCC	4 cut(s)	96, 103, 157, 1169
BshNI	GGYRCC	1 cut(s)	442
BsiEI	CGRYCG	2 cut(s)	97, 517
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	8 cut(s)	66, 85, 305, 483, 857, 894, 1320, 1334
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	1340
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	3 cut(s)	37, 400, 730
BsnI	GGCC	4 cut(s)	96, 103, 157, 1169
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	4 cut(s)	105, 299, 447, 1348
Bsp13I	TCCGGA	1 cut(s)	1319
Bsp143I	GATC	9 cut(s)	120, 255, 364, 629, 768, 837, 1020, 1133, 1322
Bsp19I	CCATGG	1 cut(s)	703
BspANI	GGCC	4 cut(s)	96, 103, 157, 1169
BspCNI	CTCAG	2 cut(s)	556, 1360
BspEI	TCCGGA	1 cut(s)	1319
BspFNI	CGCG	2 cut(s)	20, 99
BspLI	GGNNCC	5 cut(s)	70, 103, 156, 444, 631
BspPI	GGATC	6 cut(s)	263, 372, 624, 637, 763, 1330
BspQI	GCTCTTC	1 cut(s)	869
BspT107I	GGYRCC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	774
BsrFI	RCCGGY	3 cut(s)	304, 856, 1333
BsrI	ACTGG	1 cut(s)	691
BssAI	RCCGGY	3 cut(s)	304, 856, 1333
BssECI	CCNNGG	7 cut(s)	26, 97, 108, 506, 703, 1026, 1201
BssMI	GATC	9 cut(s)	120, 255, 364, 629, 768, 837, 1020, 1133, 1322
BssNI	GRCGYC	3 cut(s)	48, 63, 560
BssT1I	CCWWGG	5 cut(s)	108, 506, 703, 1026, 1201
Bst4CI	ACNGT	2 cut(s)	184, 937
Bst6I	CTCTTC	1 cut(s)	869
BstACI	GRCGYC	3 cut(s)	48, 63, 560
BstBAI	YACGTR	1 cut(s)	1259
BstC8I	GCNNGC	5 cut(s)	101, 424, 730, 1171, 1335
BstDEI	CTNAG	2 cut(s)	564, 1347
BstDSI	CCRYGG	2 cut(s)	97, 703
BstF5I	GGATG	2 cut(s)	352, 696
BstFNI	CGCG	2 cut(s)	20, 99
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	9 cut(s)	123, 258, 367, 632, 771, 840, 1023, 1136, 1325
BstMBI	GATC	9 cut(s)	120, 255, 364, 629, 768, 837, 1020, 1133, 1322
BstMCI	CGRYCG	2 cut(s)	97, 517
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 47, 347, 419, 1343
BstNSI	RCATGY	1 cut(s)	392
BstSLI	GKGCMC	2 cut(s)	105, 447
BstUI	CGCG	2 cut(s)	20, 99
BstV1I	GCAGC	4 cut(s)	53, 446, 587, 1286
BstX2I	RGATCY	3 cut(s)	629, 768, 1133
BstYI	RGATCY	3 cut(s)	629, 768, 1133
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	4 cut(s)	96, 103, 157, 1169
BtgI	CCRYGG	2 cut(s)	97, 703
BtgZI	GCGATG	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	352, 696
BtsIMutI	CAGTG	1 cut(s)	933
Cac8I	GCNNGC	5 cut(s)	101, 424, 730, 1171, 1335
CaiI	CAGNNNCTG	2 cut(s)	172, 686
CfoI	GCGC	1 cut(s)	388
Cfr10I	RCCGGY	3 cut(s)	304, 856, 1333
Cfr13I	GGNCC	5 cut(s)	101, 102, 112, 155, 942
Cfr42I	CCGCGG	1 cut(s)	100
CseI	GACGC	4 cut(s)	9, 56, 71, 568
Csp6I	GTAC	3 cut(s)	960, 1085, 1260
CviAII	CATG	5 cut(s)	286, 389, 704, 910, 1165
CviQI	GTAC	3 cut(s)	960, 1085, 1260
DdeI	CTNAG	2 cut(s)	564, 1347
DpnI	GATC	9 cut(s)	122, 257, 366, 631, 770, 839, 1022, 1135, 1324
DpnII	GATC	9 cut(s)	120, 255, 364, 629, 768, 837, 1020, 1133, 1322
DraI	TTTAAA	1 cut(s)	549
EaeI	YGGCCR	2 cut(s)	94, 1167
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	869
EarI	CTCTTC	1 cut(s)	869
EciI	GGCGGA	2 cut(s)	227, 264
Ecl136II	GAGCTC	1 cut(s)	297
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	5 cut(s)	108, 506, 703, 1026, 1201
Eco24I	GRGCYC	3 cut(s)	105, 299, 1348
Eco47I	GGWCC	2 cut(s)	112, 942
Eco52I	CGGCCG	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	872
EcoICRI	GAGCTC	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	112
EcoT14I	CCWWGG	5 cut(s)	108, 506, 703, 1026, 1201
EcoT38I	GRGCYC	3 cut(s)	105, 299, 1348
ErhI	CCWWGG	5 cut(s)	108, 506, 703, 1026, 1201
FaeI	CATG	5 cut(s)	289, 392, 707, 913, 1168
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	5 cut(s)	285, 388, 703, 909, 1164
FauI	CCCGC	2 cut(s)	92, 127
FbaI	TGATCA	2 cut(s)	120, 1020
FokI	GGATG	2 cut(s)	359, 703
FriOI	GRGCYC	3 cut(s)	105, 299, 1348
GlaI	GCGC	1 cut(s)	387
HaeIII	GGCC	4 cut(s)	96, 103, 157, 1169
HapII	CCGG	8 cut(s)	66, 85, 305, 483, 857, 894, 1320, 1334
HgaI	GACGC	4 cut(s)	9, 56, 71, 568
HhaI	GCGC	1 cut(s)	388
Hin1I	GRCGYC	3 cut(s)	48, 63, 560
Hin1II	CATG	5 cut(s)	289, 392, 707, 913, 1168
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	2 cut(s)	583, 719
HindII	GTYRAC	2 cut(s)	583, 719
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	8 cut(s)	66, 85, 305, 483, 857, 894, 1320, 1334
HphI	GGTGA	5 cut(s)	196, 319, 841, 871, 1015
Hpy166II	GTNNAC	3 cut(s)	503, 583, 719
Hpy188I	TCNGA	8 cut(s)	128, 294, 319, 542, 796, 852, 1292, 1350
Hpy188III	TCNNGA	5 cut(s)	118, 143, 614, 1238, 1320
Hpy8I	GTNNAC	3 cut(s)	503, 583, 719
Hpy99I	CGWCG	6 cut(s)	25, 50, 65, 200, 1094, 1287
HpyAV	CCTTC	6 cut(s)	337, 636, 707, 1034, 1118, 1145
HpyCH4III	ACNGT	2 cut(s)	184, 937
HpyCH4IV	ACGT	3 cut(s)	524, 1072, 1258
HpyCH4V	TGCA	3 cut(s)	350, 426, 694
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 47, 347, 419, 1343
HpyF3I	CTNAG	2 cut(s)	564, 1347
HpySE526I	ACGT	3 cut(s)	524, 1072, 1258
Hsp92I	GRCGYC	3 cut(s)	48, 63, 560
Hsp92II	CATG	5 cut(s)	289, 392, 707, 913, 1168
HspAI	GCGC	1 cut(s)	386
Kpn2I	TCCGGA	1 cut(s)	1319
KroI	GCCGGC	1 cut(s)	1333
KroNI	GCCGGC	1 cut(s)	1335
Ksp22I	TGATCA	2 cut(s)	120, 1020
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	9 cut(s)	120, 255, 364, 629, 768, 837, 1020, 1133, 1322
LguI	GCTCTTC	1 cut(s)	869
LmnI	GCTCC	3 cut(s)	294, 302, 410
Lsp1109I	GCAGC	4 cut(s)	53, 446, 587, 1286
LweI	GCATC	5 cut(s)	337, 681, 792, 802, 903
MaeII	ACGT	3 cut(s)	524, 1072, 1258
MaeIII	GTNAC	2 cut(s)	184, 478
MalI	GATC	9 cut(s)	122, 257, 366, 631, 770, 839, 1022, 1135, 1324
MbiI	CCGCTC	1 cut(s)	774
MboI	GATC	9 cut(s)	120, 255, 364, 629, 768, 837, 1020, 1133, 1322
MboII	GAAGA	1 cut(s)	886
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	3 cut(s)	629, 768, 1133
MhlI	GDGCHC	4 cut(s)	105, 299, 447, 1348
MlsI	TGGCCA	1 cut(s)	1169
MluCI	AATT	5 cut(s)	75, 351, 648, 759, 1045
MluNI	TGGCCA	1 cut(s)	1169
MmeI	TCCRAC	4 cut(s)	272, 607, 657, 1128
Mox20I	TGGCCA	1 cut(s)	1169
MroI	TCCGGA	1 cut(s)	1319
MroNI	GCCGGC	1 cut(s)	1333
MroXI	GAANNNNTTC	1 cut(s)	1065
MscI	TGGCCA	1 cut(s)	1169
MseI	TTAA	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	1169
MspA1I	CMGCKG	2 cut(s)	99, 578
MspI	CCGG	8 cut(s)	66, 85, 305, 483, 857, 894, 1320, 1334
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	3 cut(s)	37, 400, 730
MvnI	CGCG	2 cut(s)	20, 99
MwoI	GCNNNNNNNGC	5 cut(s)	41, 47, 347, 419, 1343
NaeI	GCCGGC	1 cut(s)	1335
NcoI	CCATGG	1 cut(s)	703
NdeII	GATC	9 cut(s)	120, 255, 364, 629, 768, 837, 1020, 1133, 1322
NgoMIV	GCCGGC	1 cut(s)	1333
NlaIII	CATG	5 cut(s)	289, 392, 707, 913, 1168
NlaIV	GGNNCC	5 cut(s)	70, 103, 156, 444, 631
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	184, 478
NspI	RCATGY	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	869
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PctI	GAATGC	3 cut(s)	37, 400, 730
PdiI	GCCGGC	1 cut(s)	1335
PdmI	GAANNNNTTC	1 cut(s)	1065
PfeI	GAWTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	1259
PpuMI	RGGWCCY	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	112
PspN4I	GGNNCC	5 cut(s)	70, 103, 156, 444, 631
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	5 cut(s)	101, 102, 112, 155, 942
PspPPI	RGGWCCY	1 cut(s)	112
PsrI	GAACNNNNNNTAC	2 cut(s)	1053, 1085
PstNI	CAGNNNCTG	2 cut(s)	172, 686
PsuI	RGATCY	3 cut(s)	629, 768, 1133
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	3 cut(s)	961, 1086, 1261
RsaNI	GTAC	3 cut(s)	960, 1085, 1260
SacI	GAGCTC	1 cut(s)	299
SacII	CCGCGG	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	869
SaqAI	TTAA	1 cut(s)	548
Sau3AI	GATC	9 cut(s)	120, 255, 364, 629, 768, 837, 1020, 1133, 1322
Sau96I	GGNCC	5 cut(s)	101, 102, 112, 155, 942
SduI	GDGCHC	4 cut(s)	105, 299, 447, 1348
SfaNI	GCATC	5 cut(s)	337, 681, 792, 802, 903
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
SinI	GGWCC	2 cut(s)	112, 942
SmlI	CTYRAG	4 cut(s)	614, 1034, 1177, 1236
SmoI	CTYRAG	4 cut(s)	614, 1034, 1177, 1236
Sse9I	AATT	5 cut(s)	75, 351, 648, 759, 1045
SstI	GAGCTC	1 cut(s)	299
StyI	CCWWGG	5 cut(s)	108, 506, 703, 1026, 1201
TaaI	ACNGT	2 cut(s)	184, 937
TaiI	ACGT	3 cut(s)	527, 1075, 1261
TaqI	TCGA	5 cut(s)	258, 495, 513, 906, 950
TasI	AATT	5 cut(s)	75, 351, 648, 759, 1045
TatI	WGTACW	1 cut(s)	959
TauI	GCSGC	7 cut(s)	38, 41, 99, 212, 249, 1274, 1333
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	940
TseFI	GTSAC	2 cut(s)	184, 478
TseI	GCWGC	4 cut(s)	41, 434, 575, 1274
Tsp45I	GTSAC	2 cut(s)	184, 478
TspDTI	ATGAA	2 cut(s)	910, 1207
TspGWI	ACGGA	2 cut(s)	289, 1271
TspRI	CASTG	1 cut(s)	940
VpaK11BI	GGWCC	2 cut(s)	112, 942
XapI	RAATTY	1 cut(s)	75
XceI	RCATGY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.