Rroxscaffold_4G00278780

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
1675260 .. 1678753
3494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278780.1

Sequence Viewer

Length: 1512 bp
ATGCTCAACTCGCAGGAGCCTTTGAATCTGACTCATTTACTTTATCGATCAGCATCAACCCAGAGTTCCCGCCAAATTACCAGGGTTACCCAAGTTACTCAGGCCCCAAAAAATGGCCGAATTGATGAAGGGAATTCGGAACCTTCGAGTATTGAGAGAGCACGCTCAGAATCTTCACCACTACTTGCCGCTATATGGGAAAAGCCGTCGACGGTTAAGGGAATCTTCGCAGATGTTTCAATGTGGGATAAGATCTTTATAACTTCATGCATAATTGCAGTCTTGTTGGATCCATTGTTCTTCTACATTCCATACATCCATGAAGATAACAAGTGCCTTGGAAAAGACAAGACTTTGGGGATTGCAGCTATTCTTCTGCGCTCACTCACAGATATCACTTTCATAGTGAATATTACATATCAGATTCGTGAGTGGATTAAAAGTGGTTCCATTAAAACCCAGAAAGCTGGTCTACCATCCAATGATGTAGAAGATCAAGGACCAACAATAGTTTCGGAAGATTCGGATAAAGGAGAGTGCACTCAATTTGCTGAGGAAATAGTAGGAATATTTAGCCGAACAAAAAAGAAAATAGCTGGGACAAAAAAAAAGATGGCTCAGAAGTTGCCTTGGTTAACCCTCCCCGTCTTTATTGACATTCTCGCTGTTCTTCCCCTCCCACAAACACTAATGCAGTTTGAAACTACAAAATGGGAGGAGATAAGACGGAAGATTGAAATGAAAAAGCTCGATCTAGATGTGTGGATGGAAAGAAATAAAATCCCGAATGAGCTGAAGAAAAAGATCATTAAGAGCATAAAAAAGAAGTTGGAAGAAGACAAAGATGCCAATCTTGAAAATCTGTTCAGTATTCTTCCATGGGATACCCGAAAAGATCTCAAGCGTTTTCTCTGCGTGAATGCGCTAAGAAATGAGCCGATGCTTAAAGATGCTGATCCAAAAGTGGTGAAGATGATGTGCGACTATCTGAAGCCGGTGATGTATGCGGAGAAAAGCAATATCTTTCAAGCCGGAGAACCACTCGACATGATGCTTTTCATAACGCAAGGCACTGTTTGGACATATTCGAATAGTAGTACTAGTGATGATACTTCTCTTACCGGAAAACAAAAATTGGGTAGTGCTTCTCCATCAATGATCACCAAGTCACTCAAGGAAGGCGATTCTTATGGAGTTGAACAACTTCTACGTTGGGCATCAGTACCCGACAACCCTTTCTCCAACCTTCCTCGCCTGAACGAGAATGTGAGATCCCATTCAAAAGTGGAAGGCTTTTCTCTCATGGCCGGCGACTTGAGAAAGGTAGCCATTAAATGCAAAGGCCTTTGGAACTTCACCAAAGCCCTCAATCCTCAAGAAAGAGAGGAGGTGGCACGTACTACCATAGCAGCAGCAGTCCGTCGTTTCCGAAATCAATTACAAGCACCAAAGAAGTCCGGATCAAAGCCGTCGGCAGTTGGGGCCCAGAACTCGCCAATAAACGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

503

Amino Acids

56.73

Weight (kDa)

9.31

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 2 cut(s) 209, 472
AccIII TCCGGA 1 cut(s) 1457
AciI CCGC 3 cut(s) 70, 189, 1007
AclI AACGTT 1 cut(s) 1503
AclWI GGATC 5 cut(s) 284, 297, 950, 1266, 1468
AcoI YGGCCR 2 cut(s) 115, 1305
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 815, 1010
AfaI GTAC 3 cut(s) 1099, 1224, 1399
AfiI CCNNNNNNNGG 2 cut(s) 113, 195
AgsI TTSAA 8 cut(s) 25, 240, 701, 737, 857, 1028, 1199, 1281
AhlI ACTAGT 1 cut(s) 1100
AjnI CCWGG 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 496, 528
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 5 cut(s) 368, 467, 596, 748, 793
AluI AGCT 5 cut(s) 368, 467, 596, 748, 793
Alw21I GWGCWC 2 cut(s) 163, 542
Alw44I GTGCAC 1 cut(s) 538
AlwI GGATC 5 cut(s) 284, 297, 950, 1266, 1468
Aor13HI TCCGGA 1 cut(s) 1457
AoxI GGCC 5 cut(s) 102, 115, 1305, 1342, 1482
ApaI GGGCCC 1 cut(s) 1486
ApaLI GTGCAC 1 cut(s) 538
ApeKI GCWGC 3 cut(s) 365, 1409, 1412
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 1203
AspLEI GCGC 2 cut(s) 381, 925
AspS9I GGNCC 4 cut(s) 103, 500, 1482, 1483
AsuHPI GGTGA 5 cut(s) 168, 979, 1009, 1153, 1348
AsuII TTCGAA 1 cut(s) 1088
AvaII GGWCC 1 cut(s) 500
BaeGI GKGCMC 2 cut(s) 542, 1486
BamHI GGATCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 1486
BbsI GAAGAC 1 cut(s) 843
Bbv12I GWGCWC 2 cut(s) 163, 542
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 3 cut(s) 377, 1421, 1424
BccI CCATC 4 cut(s) 484, 607, 760, 1159
BceAI ACGGC 2 cut(s) 190, 1453
BciT130I CCWGG 1 cut(s) 82
BciVI GTATCC 1 cut(s) 877
BclI TGATCA 1 cut(s) 1158
BcuI ACTAGT 1 cut(s) 1100
BfaI CTAG 2 cut(s) 755, 1101
BfuI GTATCC 1 cut(s) 877
BglII AGATCT 2 cut(s) 252, 895
BisI GCNGC 4 cut(s) 189, 366, 1410, 1413
BlsI GCNGC 4 cut(s) 190, 367, 1411, 1414
BmcAI AGTACT 1 cut(s) 1099
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 500
BmgT120I GGNCC 4 cut(s) 103, 500, 1482, 1483
BmiI GGNNCC 7 cut(s) 18, 105, 141, 291, 448, 1483, 1484
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 6 cut(s) 62, 835, 930, 940, 1041, 1226
BpiI GAAGAC 1 cut(s) 843
BplI GAGNNNNNCTC 2 cut(s) 1026, 1058
Bpu10I CCTNAGC 1 cut(s) 552
Bpu14I TTCGAA 1 cut(s) 1088
BpuEI CTTGAG 4 cut(s) 884, 1157, 1336, 1359
Bsa29I ATCGAT 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 1397
BsaBI GATNNNNATC 3 cut(s) 52, 849, 954
BsaJI CCNNGG 4 cut(s) 81, 337, 629, 878
BsaWI WCCGGW 2 cut(s) 1121, 1457
BsaXI ACNNNNNCTCC 2 cut(s) 1223, 1253
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 195
Bse118I RCCGGY 2 cut(s) 994, 1307
Bse8I GATNNNNATC 3 cut(s) 52, 849, 954
BseAI TCCGGA 1 cut(s) 1457
BseBI CCWGG 1 cut(s) 82
BseCI ATCGAT 1 cut(s) 46
BseDI CCNNGG 4 cut(s) 81, 337, 629, 878
BseGI GGATG 3 cut(s) 315, 476, 771
BseJI GATNNNNATC 3 cut(s) 52, 849, 954
BseLI CCNNNNNNNGG 2 cut(s) 113, 195
BseMII CTCAG 4 cut(s) 113, 180, 543, 632
BseRI GAGGAG 2 cut(s) 731, 1400
BseSI GKGCMC 2 cut(s) 542, 1486
BseXI GCAGC 3 cut(s) 377, 1421, 1424
BseYI CCCAGC 1 cut(s) 596
BshFI GGCC 5 cut(s) 104, 117, 1307, 1344, 1484
BshVI ATCGAT 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 163, 542
BsiSI CCGG 5 cut(s) 995, 1032, 1122, 1308, 1458
BslFI GGGAC 1 cut(s) 613
BslI CCNNNNNNNGG 2 cut(s) 113, 195
BsmFI GGGAC 1 cut(s) 613
BsmI GAATGC 1 cut(s) 925
BsnI GGCC 5 cut(s) 104, 117, 1307, 1344, 1484
Bsp119I TTCGAA 1 cut(s) 1088
Bsp120I GGGCCC 1 cut(s) 1482
Bsp1286I GDGCHC 3 cut(s) 163, 542, 1486
Bsp13I TCCGGA 1 cut(s) 1457
Bsp19I CCATGG 1 cut(s) 878
BspACI CCGC 3 cut(s) 70, 189, 1007
BspANI GGCC 5 cut(s) 104, 117, 1307, 1344, 1484
BspCNI CTCAG 4 cut(s) 112, 179, 544, 631
BspDI ATCGAT 1 cut(s) 46
BspEI TCCGGA 1 cut(s) 1457
BspLI GGNNCC 7 cut(s) 18, 105, 141, 291, 448, 1483, 1484
BspPI GGATC 5 cut(s) 284, 297, 950, 1266, 1468
BspT104I TTCGAA 1 cut(s) 1088
BsrFI RCCGGY 2 cut(s) 994, 1307
BssAI RCCGGY 2 cut(s) 994, 1307
BssECI CCNNGG 4 cut(s) 81, 337, 629, 878
BssT1I CCWWGG 3 cut(s) 337, 629, 878
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 2 cut(s) 214, 1075
BstBAI YACGTR 1 cut(s) 1397
BstBI TTCGAA 1 cut(s) 1088
BstC8I GCNNGC 2 cut(s) 163, 1309
BstDEI CTNAG 5 cut(s) 99, 166, 552, 618, 926
BstDSI CCRYGG 1 cut(s) 878
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 3 cut(s) 315, 476, 771
BstHHI GCGC 2 cut(s) 381, 925
BstMWI GCNNNNNNNGC 2 cut(s) 10, 1481
BstNI CCWGG 1 cut(s) 82
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 80
BstSLI GKGCMC 2 cut(s) 542, 1486
BstV1I GCAGC 3 cut(s) 377, 1421, 1424
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 4 cut(s) 252, 289, 895, 1271
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 4 cut(s) 252, 289, 895, 1271
Bsu15I ATCGAT 1 cut(s) 46
BsuI GTATCC 1 cut(s) 877
BsuRI GGCC 5 cut(s) 104, 117, 1307, 1344, 1484
BsuTUI ATCGAT 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 878
BtsCI GGATG 3 cut(s) 315, 476, 771
BtsIMutI CAGTG 1 cut(s) 1071
Cac8I GCNNGC 2 cut(s) 163, 1309
CfoI GCGC 2 cut(s) 381, 925
Cfr10I RCCGGY 2 cut(s) 994, 1307
Cfr13I GGNCC 4 cut(s) 103, 500, 1482, 1483
ClaI ATCGAT 1 cut(s) 46
Csp6I GTAC 3 cut(s) 1098, 1223, 1398
CviAII CATG 5 cut(s) 267, 320, 879, 1048, 1303
CviQI GTAC 3 cut(s) 1098, 1223, 1398
DdeI CTNAG 5 cut(s) 99, 166, 552, 618, 926
EaeI YGGCCR 2 cut(s) 115, 1305
Eco130I CCWWGG 3 cut(s) 337, 629, 878
Eco147I AGGCCT 1 cut(s) 1344
Eco24I GRGCYC 1 cut(s) 1486
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 500
Eco57I CTGAAG 2 cut(s) 815, 1010
Eco91I GGTNACC 1 cut(s) 85
EcoO109I RGGNCCY 2 cut(s) 103, 1482
EcoO65I GGTNACC 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 80
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 3 cut(s) 337, 629, 878
EcoT22I ATGCAT 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 1486
ErhI CCWWGG 3 cut(s) 337, 629, 878
FaeI CATG 5 cut(s) 270, 323, 882, 1051, 1306
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 1 cut(s) 613
FatI CATG 5 cut(s) 266, 319, 878, 1047, 1302
FauI CCCGC 1 cut(s) 77
FbaI TGATCA 1 cut(s) 1158
FblI GTMKAC 2 cut(s) 209, 472
Fnu4HI GCNGC 4 cut(s) 189, 366, 1410, 1413
FokI GGATG 3 cut(s) 302, 463, 778
FriOI GRGCYC 1 cut(s) 1486
Fsp4HI GCNGC 4 cut(s) 189, 366, 1410, 1413
FspBI CTAG 2 cut(s) 755, 1101
GlaI GCGC 2 cut(s) 380, 924
GluI GCNGC 4 cut(s) 189, 366, 1410, 1413
GsaI CCCAGC 1 cut(s) 600
HaeIII GGCC 5 cut(s) 104, 117, 1307, 1344, 1484
HapII CCGG 5 cut(s) 995, 1032, 1122, 1308, 1458
HhaI GCGC 2 cut(s) 381, 925
Hin1II CATG 5 cut(s) 270, 323, 882, 1051, 1306
Hin6I GCGC 2 cut(s) 379, 923
HinP1I GCGC 2 cut(s) 379, 923
HincII GTYRAC 2 cut(s) 210, 636
HindII GTYRAC 2 cut(s) 210, 636
HinfI GANTC 7 cut(s) 25, 31, 170, 222, 424, 521, 1184
HpaI GTTAAC 1 cut(s) 636
HpaII CCGG 5 cut(s) 995, 1032, 1122, 1308, 1458
HphI GGTGA 5 cut(s) 168, 979, 1009, 1153, 1348
Hpy166II GTNNAC 4 cut(s) 210, 473, 540, 636
Hpy188I TCNGA 9 cut(s) 30, 139, 169, 423, 517, 526, 621, 990, 1430
Hpy188III TCNNGA 6 cut(s) 428, 755, 784, 854, 1376, 1458
Hpy8I GTNNAC 4 cut(s) 210, 473, 540, 636
Hpy99I CGWCG 4 cut(s) 211, 214, 1425, 1474
HpyAV CCTTC 5 cut(s) 122, 153, 1172, 1256, 1283
HpyCH4III ACNGT 2 cut(s) 214, 1075
HpyCH4IV ACGT 3 cut(s) 1210, 1396, 1503
HpyCH4V TGCA 6 cut(s) 270, 278, 365, 540, 694, 1338
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 1481
HpyF3I CTNAG 5 cut(s) 99, 166, 552, 618, 926
HpySE526I ACGT 3 cut(s) 1210, 1396, 1503
Hsp92II CATG 5 cut(s) 270, 323, 882, 1051, 1306
HspAI GCGC 2 cut(s) 379, 923
Kpn2I TCCGGA 1 cut(s) 1457
KroI GCCGGC 1 cut(s) 1307
KroNI GCCGGC 1 cut(s) 1309
Ksp22I TGATCA 1 cut(s) 1158
KspAI GTTAAC 1 cut(s) 636
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 3 cut(s) 377, 1421, 1424
LweI GCATC 6 cut(s) 62, 835, 930, 940, 1041, 1226
MaeI CTAG 2 cut(s) 755, 1101
MaeII ACGT 3 cut(s) 1210, 1396, 1503
MaeIII GTNAC 3 cut(s) 85, 94, 1167
MflI RGATCY 4 cut(s) 252, 289, 895, 1271
MhlI GDGCHC 3 cut(s) 163, 542, 1486
MluCI AATT 7 cut(s) 75, 120, 133, 273, 545, 1133, 1436
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 3 cut(s) 267, 810, 1266
MnlI CCTC 9 cut(s) 547, 650, 686, 709, 1260, 1376, 1378, 1381, 1383
Mph1103I ATGCAT 1 cut(s) 272
MroI TCCGGA 1 cut(s) 1457
MroNI GCCGGC 1 cut(s) 1307
MroXI GAANNNNTTC 1 cut(s) 1203
MseI TTAA 7 cut(s) 216, 438, 453, 635, 810, 945, 1332
MspI CCGG 5 cut(s) 995, 1032, 1122, 1308, 1458
MspR9I CCNGG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 10, 1481
NaeI GCCGGC 1 cut(s) 1309
NcoI CCATGG 1 cut(s) 878
NgoMIV GCCGGC 1 cut(s) 1307
NlaIII CATG 5 cut(s) 270, 323, 882, 1051, 1306
NlaIV GGNNCC 7 cut(s) 18, 105, 141, 291, 448, 1483, 1484
NmuCI GTSAC 1 cut(s) 1167
NsiI ATGCAT 1 cut(s) 272
NspV TTCGAA 1 cut(s) 1088
PceI AGGCCT 1 cut(s) 1344
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PctI GAATGC 1 cut(s) 925
PdiI GCCGGC 1 cut(s) 1309
PdmI GAANNNNTTC 1 cut(s) 1203
PfeI GAWTC 6 cut(s) 25, 170, 222, 424, 521, 1184
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 4 cut(s) 190, 367, 1411, 1414
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 1397
PsiI TTATAA 1 cut(s) 260
Psp1406I AACGTT 1 cut(s) 1503
Psp6I CCWGG 1 cut(s) 80
PspEI GGTNACC 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 7 cut(s) 18, 105, 141, 291, 448, 1483, 1484
PspOMI GGGCCC 1 cut(s) 1482
PspPI GGNCC 4 cut(s) 103, 500, 1482, 1483
PsrI GAACNNNNNNTAC 2 cut(s) 1191, 1223
PsuI RGATCY 4 cut(s) 252, 289, 895, 1271
RsaI GTAC 3 cut(s) 1099, 1224, 1399
RsaNI GTAC 3 cut(s) 1098, 1223, 1398
SalI GTCGAC 1 cut(s) 208
SaqAI TTAA 7 cut(s) 216, 438, 453, 635, 810, 945, 1332
SatI GCNGC 4 cut(s) 189, 366, 1410, 1413
Sau96I GGNCC 4 cut(s) 103, 500, 1482, 1483
ScaI AGTACT 1 cut(s) 1099
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 3 cut(s) 163, 542, 1486
SfaNI GCATC 6 cut(s) 62, 835, 930, 940, 1041, 1226
SfuI TTCGAA 1 cut(s) 1088
SgrDI CGTCGACG 1 cut(s) 208
SinI GGWCC 1 cut(s) 500
SmlI CTYRAG 4 cut(s) 899, 1172, 1315, 1374
SmoI CTYRAG 4 cut(s) 899, 1172, 1315, 1374
SpeI ACTAGT 1 cut(s) 1100
Sse9I AATT 7 cut(s) 75, 120, 133, 273, 545, 1133, 1436
SseBI AGGCCT 1 cut(s) 1344
SsiI CCGC 3 cut(s) 70, 189, 1007
SspI AATATT 2 cut(s) 412, 570
SspMI CTAG 2 cut(s) 755, 1101
StuI AGGCCT 1 cut(s) 1344
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 3 cut(s) 337, 629, 878
TaaI ACNGT 2 cut(s) 214, 1075
TaiI ACGT 3 cut(s) 1213, 1399, 1506
TaqI TCGA 6 cut(s) 46, 146, 209, 750, 1044, 1088
TasI AATT 7 cut(s) 75, 120, 133, 273, 545, 1133, 1436
TatI WGTACW 1 cut(s) 1097
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 6 cut(s) 25, 170, 222, 424, 521, 1184
Tru1I TTAA 7 cut(s) 216, 438, 453, 635, 810, 945, 1332
Tru9I TTAA 7 cut(s) 216, 438, 453, 635, 810, 945, 1332
TscAI CASTG 1 cut(s) 1078
TseFI GTSAC 1 cut(s) 1167
TseI GCWGC 3 cut(s) 365, 1409, 1412
Tsp45I GTSAC 1 cut(s) 1167
TspDTI ATGAA 6 cut(s) 141, 255, 336, 391, 755, 1048
TspGWI ACGGA 2 cut(s) 742, 1409
TspRI CASTG 1 cut(s) 1078
Van91I CCANNNNNTGG 1 cut(s) 113
VneI GTGCAC 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 754
XmiI GTMKAC 2 cut(s) 209, 472
XmnI GAANNNNTTC 1 cut(s) 1203
XspI CTAG 2 cut(s) 755, 1101
ZrmI AGTACT 1 cut(s) 1099
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.