Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014826

Physical Location & Seq

Genomic Coordinates Reverse (-)

68161919 .. 68162449

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG422100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATGCTTTTCATTACACAAGGCACTGTTTGGACCTATTCGAGTGGTAGTATTAGTGATGATACTTCTCTTACCGGAAAACAAAAACTGGGTAGTGCTTCTCCATCAATGATCACCAAGTCACTCAAGGAAGGCGATTTCAGGCGGGCAGCAGTACCCGACAACCCTTTCTCCAACCTTCCTGGCGTGAACGAGAATGTGAGATCTCATTCAAAAGTGGAAGGCTTTGCACTCATGGCCAGCGACTTGAGAAAGGTAGCCATCAAATGCCAAGTCATTTGGAACTTCACCAATGCCCTCAATCCTCAAGAAAGAGAGGAGGTGGCACGTACTACCATAGCCGCAGCAGTCCGTTGTTTTCGAAATCAATTACAAGCACCAAAGAAGTCTGGATCAAAGCCGTCGGAAGTTGGCTCAGAACTCGCCAATAAACATTGTTTAGCTCGTCTTCCCCTAGCTAGTTACTTGGTCCATTTTCCTTTTACAAGGCAACTAGCTAAGCCAACATTGATCTGGCATGGTCTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

176

Amino Acids

19.36

Weight (kDa)

9.79

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014826)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G312600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336901
rosa_laevigata	RLG00000029326
rosa_multiflora	Rmu_sc0002067.1_g000001 Rmu_sc0002798.1_g000007 Rmu_sc0003688.1_g000007 Rmu_sc0004920.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278740 Rroxscaffold_4G00278780 Rroxscaffold_4G00315270
rosa_rugosa	Rorug01G0128700
rosa_samantha	Rh1CG140800 Rh1CG422100 Rh1CG422400 Rh1DG156700
rosa_wichuraiana	Rw1G012090 Rw1G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	145, 342
AclWI	GGATC	1 cut(s)	400
AcoI	YGGCCR	1 cut(s)	237
AfaI	GTAC	2 cut(s)	156, 331
AgsI	TTSAA	1 cut(s)	213
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	443, 458, 497
AluI	AGCT	3 cut(s)	443, 458, 497
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	149, 344
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspS9I	GGNCC	2 cut(s)	33, 469
AsuHPI	GGTGA	2 cut(s)	106, 280
AsuII	TTCGAA	1 cut(s)	361
AvaII	GGWCC	2 cut(s)	33, 469
BalI	TGGCCA	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	161, 356
BccI	CCATC	2 cut(s)	112, 269
BceAI	ACGGC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	183
BclI	TGATCA	1 cut(s)	111
BfaI	CTAG	3 cut(s)	455, 459, 494
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	3 cut(s)	150, 342, 345
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	3 cut(s)	151, 343, 346
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	33, 469
BmgT120I	GGNCC	2 cut(s)	33, 469
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	440
Bpu1102I	GCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	361
BpuEI	CTTGAG	3 cut(s)	110, 268, 291
BsaAI	YACGTR	1 cut(s)	329
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	161, 356
BshFI	GGCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	75
BsnI	GGCC	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	111, 203, 392, 510
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	2 cut(s)	145, 342
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	428
BspPI	GGATC	1 cut(s)	400
BspT104I	TTCGAA	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	93
BssMI	GATC	4 cut(s)	111, 203, 392, 510
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	147, 241
BstDEI	CTNAG	2 cut(s)	415, 498
BstKTI	GATC	4 cut(s)	114, 206, 395, 513
BstMBI	GATC	4 cut(s)	111, 203, 392, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	161, 356
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	147, 241
Cfr13I	GGNCC	2 cut(s)	33, 469
Csp6I	GTAC	2 cut(s)	155, 330
CviAII	CATG	2 cut(s)	235, 518
CviQI	GTAC	2 cut(s)	155, 330
DdeI	CTNAG	2 cut(s)	415, 498
DpnI	GATC	4 cut(s)	113, 205, 394, 512
DpnII	GATC	4 cut(s)	111, 203, 392, 510
EaeI	YGGCCR	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	33, 469
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	2 cut(s)	238, 521
FaiI	YATR	4 cut(s)	236, 338, 519, 529
FatI	CATG	2 cut(s)	234, 517
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	150, 342, 345
Fsp4HI	GCNGC	3 cut(s)	150, 342, 345
FspBI	CTAG	3 cut(s)	455, 459, 494
GluI	GCNGC	3 cut(s)	150, 342, 345
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	2 cut(s)	238, 521
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	106, 280
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	406, 418
Hpy188III	TCNNGA	2 cut(s)	308, 390
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	125, 188, 215
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	415, 498
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	2 cut(s)	238, 521
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	111, 203, 392, 510
LpnPI	CCDG	8 cut(s)	74, 88, 127, 168, 195, 253, 375, 499
Lsp1109I	GCAGC	2 cut(s)	161, 356
MaeI	CTAG	3 cut(s)	455, 459, 494
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	120, 461
MalI	GATC	4 cut(s)	113, 205, 394, 512
MboI	GATC	4 cut(s)	111, 203, 392, 510
MboII	GAAGA	1 cut(s)	440
MflI	RGATCY	1 cut(s)	203
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	198, 384
MnlI	CCTC	4 cut(s)	308, 310, 313, 315
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	239
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	4 cut(s)	111, 203, 392, 510
NlaIII	CATG	2 cut(s)	238, 521
NmuCI	GTSAC	1 cut(s)	120
NspV	TTCGAA	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	151, 343, 346
Ppu21I	YACGTR	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	33, 469
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	2 cut(s)	156, 331
RsaNI	GTAC	2 cut(s)	155, 330
SatI	GCNGC	3 cut(s)	150, 342, 345
Sau3AI	GATC	4 cut(s)	111, 203, 392, 510
Sau96I	GGNCC	2 cut(s)	33, 469
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	8 cut(s)	38, 180, 258, 324, 331, 445, 460, 499
SfuI	TTCGAA	1 cut(s)	361
SinI	GGWCC	2 cut(s)	33, 469
SmlI	CTYRAG	3 cut(s)	125, 247, 306
SmoI	CTYRAG	3 cut(s)	125, 247, 306
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	2 cut(s)	145, 342
SspMI	CTAG	3 cut(s)	455, 459, 494
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	41, 361
TasI	AATT	1 cut(s)	368
TauI	GCSGC	1 cut(s)	344
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	120
TseI	GCWGC	2 cut(s)	149, 344
Tsp45I	GTSAC	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	33, 469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XspI	CTAG	3 cut(s)	455, 459, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.