Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002798.1

Orthogroup ID

OG0014826

Physical Location & Seq

Genomic Coordinates Forward (+)

54350 .. 55195

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002798.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgaaaaggctcgatctagaagtatggatgcaaagaaataaaatcccggatgagctgaggaaaaagatcattaagagcataaaaaagaagttggaagaagacaaagatgccaatcttgaaaatctattcagtattcttccatgggataccagaaaagatcttaagcgttttctctgcgtgaatgcgctaagaaatgagccgatgctcaaagatgctaatccaaaagtggtgaaaatgatctgcaactatctgaagccggtgatgtatgtggagaaaagcagtatctttcaagccggagaaccactcgacatgatgcttttcataacgcaaggcactgtttggacctattcgagtagtagtacaagtgatgatacttctccaacaggaaagcaaaaactgggtagtgcttctccattaatgatcaccaagtcactcaaggaaggcaattcttatggagttgaacaacttttacgatgggtagcagtacccgaccaccatttctccaaccttccttgcctgaacgagaatgtgagatctcattcaaaagtggaaggctttacactcatggccagcgacttgagaaaggcagccatcaaatgtcaaggcatttggaacttcatcaatgcccccaatcctcaagaacgagaggaggtggcacgtactaccatagccgcagcagtccgtcgtttccgaaatcagttacaagcaccaaaaaagtccggatactcgccaataaacatcgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

248

Amino Acids

28.33

Weight (kDa)

9.55

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014826)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G312600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336901
rosa_laevigata	RLG00000029326
rosa_multiflora	Rmu_sc0002067.1_g000001 Rmu_sc0002798.1_g000007 Rmu_sc0003688.1_g000007 Rmu_sc0004920.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278740 Rroxscaffold_4G00278780 Rroxscaffold_4G00315270
rosa_rugosa	Rorug01G0128700
rosa_samantha	Rh1CG140800 Rh1CG422100 Rh1CG422400 Rh1DG156700
rosa_wichuraiana	Rw1G012090 Rw1G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	719
AciI	CCGC	1 cut(s)	672
AcoI	YGGCCR	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	3 cut(s)	361, 486, 661
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	119, 290, 461, 543
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	719
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	587, 674
AseI	ATTAAT	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	241, 271, 415
AvaII	GGWCC	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	569
BbsI	GAAGAC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	599, 686
BccI	CCATC	2 cut(s)	468, 599
BciVI	GTATCC	2 cut(s)	139, 716
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	47
BfaI	CTAG	1 cut(s)	17
BfrI	CTTAAG	1 cut(s)	161
BfuI	GTATCC	2 cut(s)	139, 716
BglII	AGATCT	2 cut(s)	157, 533
BisI	GCNGC	3 cut(s)	588, 672, 675
BlsI	GCNGC	3 cut(s)	589, 673, 676
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	5 cut(s)	18, 97, 192, 202, 303
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
Bpu10I	CCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	3 cut(s)	419, 598, 621
BpuMI	CCSGG	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	659
BsaBI	GATNNNNATC	2 cut(s)	111, 216
BsaJI	CCNNGG	1 cut(s)	140
BsaWI	WCCGGW	1 cut(s)	719
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	402
Bse8I	GATNNNNATC	2 cut(s)	111, 216
BseAI	TCCGGA	1 cut(s)	719
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	33, 55
BseJI	GATNNNNATC	2 cut(s)	111, 216
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	2 cut(s)	599, 686
BshFI	GGCC	1 cut(s)	569
BsiSI	CCGG	4 cut(s)	47, 257, 294, 720
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	569
Bsp13I	TCCGGA	1 cut(s)	719
Bsp143I	GATC	6 cut(s)	13, 66, 157, 237, 420, 533
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	1 cut(s)	672
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	719
BspTI	CTTAAG	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	6 cut(s)	13, 66, 157, 237, 420, 533
BssT1I	CCWWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	337
BstAFI	CTTAAG	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	2 cut(s)	56, 188
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	33, 55
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	6 cut(s)	16, 69, 160, 240, 423, 536
BstMBI	GATC	6 cut(s)	13, 66, 157, 237, 420, 533
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	599, 686
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	157, 533
BstYI	RGATCY	2 cut(s)	157, 533
BsuI	GTATCC	2 cut(s)	139, 716
BsuRI	GGCC	1 cut(s)	569
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	33, 55
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	571
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	360, 485, 660
CviAII	CATG	3 cut(s)	141, 310, 565
CviJI	RGCY	9 cut(s)	10, 55, 199, 256, 293, 555, 569, 590, 671
CviKI_1	RGCY	9 cut(s)	10, 55, 199, 256, 293, 555, 569, 590, 671
CviQI	GTAC	3 cut(s)	360, 485, 660
DdeI	CTNAG	2 cut(s)	56, 188
DpnI	GATC	6 cut(s)	15, 68, 159, 239, 422, 535
DpnII	GATC	6 cut(s)	13, 66, 157, 237, 420, 533
EaeI	YGGCCR	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	3 cut(s)	144, 313, 568
FaiI	YATR	9 cut(s)	25, 80, 142, 267, 311, 323, 453, 566, 668
FatI	CATG	3 cut(s)	140, 309, 564
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	588, 672, 675
FokI	GGATG	2 cut(s)	40, 62
Fsp4HI	GCNGC	3 cut(s)	588, 672, 675
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	3 cut(s)	588, 672, 675
HaeIII	GGCC	1 cut(s)	569
HapII	CCGG	4 cut(s)	47, 257, 294, 720
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	144, 313, 568
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HpaII	CCGG	4 cut(s)	47, 257, 294, 720
HphI	GGTGA	3 cut(s)	241, 271, 415
Hpy188I	TCNGA	2 cut(s)	252, 692
Hpy188III	TCNNGA	4 cut(s)	17, 116, 638, 720
Hpy99I	CGWCG	1 cut(s)	687
HpyAV	CCTTC	3 cut(s)	434, 518, 545
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	2 cut(s)	31, 243
HpyF3I	CTNAG	2 cut(s)	56, 188
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	3 cut(s)	144, 313, 568
HspAI	GCGC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	719
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	6 cut(s)	13, 66, 157, 237, 420, 533
LpnPI	CCDG	9 cut(s)	60, 163, 270, 307, 369, 383, 530, 583, 733
Lsp1109I	GCAGC	2 cut(s)	599, 686
LweI	GCATC	5 cut(s)	18, 97, 192, 202, 303
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	2 cut(s)	429, 699
MalI	GATC	6 cut(s)	15, 68, 159, 239, 422, 535
MboI	GATC	6 cut(s)	13, 66, 157, 237, 420, 533
MboII	GAAGA	3 cut(s)	107, 110, 128
MflI	RGATCY	2 cut(s)	157, 533
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	1 cut(s)	445
MluNI	TGGCCA	1 cut(s)	569
MmeI	TCCRAC	3 cut(s)	72, 404, 528
MnlI	CCTC	4 cut(s)	51, 640, 643, 645
Mox20I	TGGCCA	1 cut(s)	569
MroI	TCCGGA	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	3 cut(s)	72, 162, 416
Msp20I	TGGCCA	1 cut(s)	569
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	4 cut(s)	47, 257, 294, 720
MspR9I	CCNGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	6 cut(s)	13, 66, 157, 237, 420, 533
NlaIII	CATG	3 cut(s)	144, 313, 568
NmuCI	GTSAC	1 cut(s)	429
PctI	GAATGC	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	589, 673, 676
Ppu21I	YACGTR	1 cut(s)	659
PshBI	ATTAAT	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	342
PsrI	GAACNNNNNNTAC	2 cut(s)	453, 485
PsuI	RGATCY	2 cut(s)	157, 533
RsaI	GTAC	3 cut(s)	361, 486, 661
RsaNI	GTAC	3 cut(s)	360, 485, 660
SaqAI	TTAA	3 cut(s)	72, 162, 416
SatI	GCNGC	3 cut(s)	588, 672, 675
Sau3AI	GATC	6 cut(s)	13, 66, 157, 237, 420, 533
Sau96I	GGNCC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	5 cut(s)	57, 347, 510, 654, 661
SfaNI	GCATC	5 cut(s)	18, 97, 192, 202, 303
SinI	GGWCC	1 cut(s)	342
SmlI	CTYRAG	4 cut(s)	161, 434, 577, 636
SmoI	CTYRAG	4 cut(s)	161, 434, 577, 636
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	1 cut(s)	672
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	3 cut(s)	12, 306, 350
TasI	AATT	1 cut(s)	445
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	674
Tru1I	TTAA	3 cut(s)	72, 162, 416
Tru9I	TTAA	3 cut(s)	72, 162, 416
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	2 cut(s)	587, 674
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	3 cut(s)	17, 310, 607
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	342
VspI	ATTAAT	1 cut(s)	416
XbaI	TCTAGA	1 cut(s)	16
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.