Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014826

Physical Location & Seq

Genomic Coordinates Forward (+)

30646467 .. 30650115

Gene Structure 3649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG140800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCATAATGACAAAGGATGTATGAGTAAGTTTTACTGCAAAGGGAATCAAGCTTCTCCGAATACAACTATCACATCATTCCTAGAGGAGCATTGTCCTCTAAGTGACAATATCACATCGGAACAATTTAATTTTGGAATGTTTCTTGATGGCCTAAAAAATAATAATACGCAACACATAAATTTTGCACGAAAGTTCTTCTTCTCCTTTTGGTGGGGCCTAAGAAACCTAAGTAATTTCGGCACAAATCTGACAGAAACAAGTACATATGTGTGGGAAAACTTATTCGCCATTCTTATCTCTATCATTGGCTTGCTACTGTTCCTATATCTCATTGGAAATGTGCAGACACTAATGCAGTTTGAAACTACAAAATGGGAGGAGATAAGACGGAAGATTGAAATGAAAAGGCTCGATCTAGAAGTGTGGATGCAAAGAAATAAAATCCCGAATGAGCTGAAGAAAAAGATCATTAAGAGCATAAAAAAGAAGTTGGAAGAAGACAAAGATGCCAATCTTGAAAATCTATTCAGTATTCTTCCATGGGATACCAGAAAAGATCTTAAGCGTTTTCTCTGCGTGAATGCGCTAAGAAATGAGCCGATGCTCAAAGATGCTAATCCAAAAGTGGTGAAAATGATCTGCGACTATCTGAAGCCGGTGATGTATGTGGAGAAGAGCAGTATCTTTCAAGCCGGAGAACCACTCGACATGATGCTTTTCATAACGCAAGGCACTGTTTGGACCTATTCGAGTAGTAGTACAAGTGATGATACTTCTCTAACAGGAAAACAAAAACTGGGTAGTGCTTCTCCAATAATGATCACCAAGTCTCTCAAGGAAGGCAATTCTTATGGAGTTGAACAACTTCTACGTTGGGTAGCAGTACCCGACGACCATTTCTCCAACCTTCCTTGCCTGAACGAGAATGTGAGATCTCATTCAAAAGTGGAAGGCTTTACACTCCTGGCCAGCGACTTGAGAAAGGTAGCCACCAAATGCCAAGTCATTTGGAACTTCATCAATGCCCCCAATCCTCAAGAAAGAGAGGAGGTGGCAAGTACTACCATAGCCGCAGCAGTCCGTCGTTTCCGAAATCAGTTACAAGCACCAAAGAAGTCCGGATCAAAGCCGTCGGCAGTTGGGGCTCAGAACTCGCCAATAAACATCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

391

Amino Acids

44.74

Weight (kDa)

9.14

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014826)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G312600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336901
rosa_laevigata	RLG00000029326
rosa_multiflora	Rmu_sc0002067.1_g000001 Rmu_sc0002798.1_g000007 Rmu_sc0003688.1_g000007 Rmu_sc0004920.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278740 Rroxscaffold_4G00278780 Rroxscaffold_4G00315270
rosa_rugosa	Rorug01G0128700
rosa_samantha	Rh1CG140800 Rh1CG422100 Rh1CG422400 Rh1DG156700
rosa_wichuraiana	Rw1G012090 Rw1G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1121
AciI	CCGC	1 cut(s)	1074
AclWI	GGATC	1 cut(s)	1132
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	2 cut(s)	479, 674
AfaI	GTAC	4 cut(s)	265, 763, 888, 1063
AfiI	CCNNNNNNNGG	1 cut(s)	213
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	6 cut(s)	365, 401, 521, 692, 863, 945
AjnI	CCWGG	1 cut(s)	966
AluBI	AGCT	2 cut(s)	53, 457
AluI	AGCT	2 cut(s)	53, 457
Alw26I	GTCTC	1 cut(s)	837
AlwI	GGATC	1 cut(s)	1132
Aor13HI	TCCGGA	1 cut(s)	1121
AoxI	GGCC	3 cut(s)	151, 217, 969
ApeKI	GCWGC	1 cut(s)	1076
ApoI	RAATTY	1 cut(s)	181
ArsI	GACNNNNNNTTYG	2 cut(s)	990, 1022
Asp700I	GAANNNNTTC	1 cut(s)	867
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	2 cut(s)	217, 744
AsuHPI	GGTGA	3 cut(s)	643, 673, 817
AvaII	GGWCC	1 cut(s)	744
BalI	TGGCCA	1 cut(s)	971
BanII	GRGCYC	1 cut(s)	1150
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	1088
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	1117
BciT130I	CCWGG	1 cut(s)	968
BciVI	GTATCC	1 cut(s)	541
BclI	TGATCA	1 cut(s)	822
BcoDI	GTCTC	1 cut(s)	837
BfaI	CTAG	2 cut(s)	83, 419
BfrI	CTTAAG	1 cut(s)	563
BfuI	GTATCC	1 cut(s)	541
BglII	AGATCT	2 cut(s)	559, 935
BisI	GCNGC	2 cut(s)	1074, 1077
BlsI	GCNGC	2 cut(s)	1075, 1078
BmcAI	AGTACT	1 cut(s)	1063
Bme1390I	CCNGG	1 cut(s)	968
Bme18I	GGWCC	1 cut(s)	744
BmgT120I	GGNCC	2 cut(s)	217, 744
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	968
BmrI	ACTGGG	1 cut(s)	809
BmsI	GCATC	5 cut(s)	420, 499, 594, 604, 705
BmuI	ACTGGG	1 cut(s)	809
BpiI	GAAGAC	1 cut(s)	507
BplI	GAGNNNNNCTC	2 cut(s)	690, 722
BpuEI	CTTGAG	3 cut(s)	821, 1000, 1023
BsaBI	GATNNNNATC	2 cut(s)	513, 618
BsaJI	CCNNGG	1 cut(s)	542
BsaWI	WCCGGW	1 cut(s)	1121
BsaXI	ACNNNNNCTCC	2 cut(s)	887, 917
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse118I	RCCGGY	1 cut(s)	658
Bse1I	ACTGG	1 cut(s)	804
Bse8I	GATNNNNATC	2 cut(s)	513, 618
BseAI	TCCGGA	1 cut(s)	1121
BseBI	CCWGG	1 cut(s)	968
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	2 cut(s)	23, 435
BseJI	GATNNNNATC	2 cut(s)	513, 618
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	1163
BseNI	ACTGG	1 cut(s)	804
BseRI	GAGGAG	3 cut(s)	101, 395, 1064
BseXI	GCAGC	1 cut(s)	1088
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	3 cut(s)	153, 219, 971
BsiSI	CCGG	3 cut(s)	659, 696, 1122
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	837
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	3 cut(s)	153, 219, 971
Bsp1286I	GDGCHC	1 cut(s)	1150
Bsp13I	TCCGGA	1 cut(s)	1121
Bsp143I	GATC	7 cut(s)	415, 468, 559, 639, 822, 935, 1124
Bsp19I	CCATGG	1 cut(s)	542
BspACI	CCGC	1 cut(s)	1074
BspANI	GGCC	3 cut(s)	153, 219, 971
BspCNI	CTCAG	1 cut(s)	1162
BspEI	TCCGGA	1 cut(s)	1121
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	1132
BspQI	GCTCTTC	1 cut(s)	671
BspTI	CTTAAG	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	658
BsrI	ACTGG	1 cut(s)	804
BssAI	RCCGGY	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	7 cut(s)	415, 468, 559, 639, 822, 935, 1124
BssT1I	CCWWGG	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	968
Bst4CI	ACNGT	2 cut(s)	321, 739
Bst6I	CTCTTC	1 cut(s)	671
BstAFI	CTTAAG	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	314, 973
BstDEI	CTNAG	5 cut(s)	101, 221, 230, 590, 1149
BstDSI	CCRYGG	1 cut(s)	542
BstF5I	GGATG	2 cut(s)	23, 435
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	7 cut(s)	418, 471, 562, 642, 825, 938, 1127
BstMAI	GTCTC	1 cut(s)	837
BstMBI	GATC	7 cut(s)	415, 468, 559, 639, 822, 935, 1124
BstMWI	GCNNNNNNNGC	1 cut(s)	1145
BstNI	CCWGG	1 cut(s)	968
BstSCI	CCNGG	1 cut(s)	966
BstV1I	GCAGC	1 cut(s)	1088
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	2 cut(s)	559, 935
BstYI	RGATCY	2 cut(s)	559, 935
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	3 cut(s)	153, 219, 971
BtgI	CCRYGG	1 cut(s)	542
BtsCI	GGATG	2 cut(s)	23, 435
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	2 cut(s)	314, 973
CfoI	GCGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	217, 744
Csp6I	GTAC	4 cut(s)	264, 762, 887, 1062
CviAII	CATG	2 cut(s)	543, 712
CviQI	GTAC	4 cut(s)	264, 762, 887, 1062
DdeI	CTNAG	5 cut(s)	101, 221, 230, 590, 1149
DpnI	GATC	7 cut(s)	417, 470, 561, 641, 824, 937, 1126
DpnII	GATC	7 cut(s)	415, 468, 559, 639, 822, 935, 1124
EaeI	YGGCCR	1 cut(s)	969
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
Eco130I	CCWWGG	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	1150
Eco47I	GGWCC	1 cut(s)	744
Eco57I	CTGAAG	2 cut(s)	479, 674
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	966
EcoT14I	CCWWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	1150
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	2 cut(s)	546, 715
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	2 cut(s)	542, 711
FauNDI	CATATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	822
Fnu4HI	GCNGC	2 cut(s)	1074, 1077
FokI	GGATG	2 cut(s)	30, 442
FriOI	GRGCYC	1 cut(s)	1150
Fsp4HI	GCNGC	2 cut(s)	1074, 1077
FspBI	CTAG	2 cut(s)	83, 419
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	2 cut(s)	1074, 1077
HaeIII	GGCC	3 cut(s)	153, 219, 971
HapII	CCGG	3 cut(s)	659, 696, 1122
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	2 cut(s)	546, 715
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	3 cut(s)	659, 696, 1122
HphI	GGTGA	3 cut(s)	643, 673, 817
Hpy188I	TCNGA	6 cut(s)	60, 121, 252, 654, 1094, 1152
Hpy188III	TCNNGA	6 cut(s)	146, 419, 448, 518, 1040, 1122
Hpy99I	CGWCG	3 cut(s)	896, 1089, 1138
HpyAV	CCTTC	3 cut(s)	836, 920, 947
HpyCH4III	ACNGT	2 cut(s)	321, 739
HpyCH4IV	ACGT	1 cut(s)	874
HpyCH4V	TGCA	6 cut(s)	4, 39, 188, 346, 358, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1145
HpyF3I	CTNAG	5 cut(s)	101, 221, 230, 590, 1149
HpySE526I	ACGT	1 cut(s)	874
Hsp92II	CATG	2 cut(s)	546, 715
HspAI	GCGC	1 cut(s)	587
Kpn2I	TCCGGA	1 cut(s)	1121
Ksp22I	TGATCA	1 cut(s)	822
Kzo9I	GATC	7 cut(s)	415, 468, 559, 639, 822, 935, 1124
LguI	GCTCTTC	1 cut(s)	671
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	1088
LweI	GCATC	5 cut(s)	420, 499, 594, 604, 705
MaeI	CTAG	2 cut(s)	83, 419
MaeII	ACGT	1 cut(s)	874
MaeIII	GTNAC	2 cut(s)	104, 1101
MalI	GATC	7 cut(s)	417, 470, 561, 641, 824, 937, 1126
MboI	GATC	7 cut(s)	415, 468, 559, 639, 822, 935, 1124
MboII	GAAGA	8 cut(s)	190, 193, 406, 472, 509, 512, 530, 688
MflI	RGATCY	2 cut(s)	559, 935
MhlI	GDGCHC	1 cut(s)	1150
MlsI	TGGCCA	1 cut(s)	971
MluCI	AATT	5 cut(s)	125, 130, 181, 235, 847
MluNI	TGGCCA	1 cut(s)	971
MmeI	TCCRAC	2 cut(s)	474, 930
MnlI	CCTC	6 cut(s)	79, 108, 373, 1042, 1045, 1047
Mox20I	TGGCCA	1 cut(s)	971
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	1121
MroXI	GAANNNNTTC	1 cut(s)	867
MscI	TGGCCA	1 cut(s)	971
MseI	TTAA	3 cut(s)	129, 474, 564
MslI	CAYNNNNRTG	1 cut(s)	271
Msp20I	TGGCCA	1 cut(s)	971
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	3 cut(s)	659, 696, 1122
MspR9I	CCNGG	1 cut(s)	968
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	968
MwoI	GCNNNNNNNGC	1 cut(s)	1145
NcoI	CCATGG	1 cut(s)	542
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	7 cut(s)	415, 468, 559, 639, 822, 935, 1124
NlaIII	CATG	2 cut(s)	546, 715
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	671
PctI	GAATGC	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	867
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	1075, 1078
Psp6I	CCWGG	1 cut(s)	966
PspGI	CCWGG	1 cut(s)	966
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	217, 744
PsrI	GAACNNNNNNTAC	2 cut(s)	855, 887
PsuI	RGATCY	2 cut(s)	559, 935
RsaI	GTAC	4 cut(s)	265, 763, 888, 1063
RsaNI	GTAC	4 cut(s)	264, 762, 887, 1062
RseI	CAYNNNNRTG	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	3 cut(s)	129, 474, 564
SatI	GCNGC	2 cut(s)	1074, 1077
Sau3AI	GATC	7 cut(s)	415, 468, 559, 639, 822, 935, 1124
Sau96I	GGNCC	2 cut(s)	217, 744
ScaI	AGTACT	1 cut(s)	1063
ScrFI	CCNGG	1 cut(s)	968
SduI	GDGCHC	1 cut(s)	1150
SetI	ASST	8 cut(s)	55, 231, 459, 749, 877, 912, 990, 1056
SfaNI	GCATC	5 cut(s)	420, 499, 594, 604, 705
SinI	GGWCC	1 cut(s)	744
SmiMI	CAYNNNNRTG	1 cut(s)	271
SmlI	CTYRAG	4 cut(s)	563, 836, 979, 1038
SmoI	CTYRAG	4 cut(s)	563, 836, 979, 1038
Sse9I	AATT	5 cut(s)	125, 130, 181, 235, 847
SsiI	CCGC	1 cut(s)	1074
SspMI	CTAG	2 cut(s)	83, 419
StyD4I	CCNGG	1 cut(s)	966
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	321, 739
TaiI	ACGT	1 cut(s)	877
TaqI	TCGA	3 cut(s)	414, 708, 752
TasI	AATT	5 cut(s)	125, 130, 181, 235, 847
TatI	WGTACW	3 cut(s)	263, 761, 1061
TauI	GCSGC	1 cut(s)	1076
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	3 cut(s)	129, 474, 564
Tru9I	TTAA	3 cut(s)	129, 474, 564
TscAI	CASTG	1 cut(s)	742
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	1076
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	419, 712, 1009
TspGWI	ACGGA	2 cut(s)	406, 1073
TspRI	CASTG	1 cut(s)	742
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	744
XapI	RAATTY	1 cut(s)	181
XbaI	TCTAGA	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	867
XspI	CTAG	2 cut(s)	83, 419
ZrmI	AGTACT	1 cut(s)	1063
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.