Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014826

Physical Location & Seq

Genomic Coordinates Reverse (-)

39544527 .. 39549831

Gene Structure 5305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGACGGAAGCAAGACGACGACATGATGACATAAACCCAGATTTCCCGCCAGATTACCACGGTTACCCAAGTTACTCAGGCCCCAAAAATGGCCGAATTGATGAAGGGAAATCGGAACCTTCGAGTATTGAGAAAGCACGCTCAGAATCTTCACCACTACTCGCCGCTATATGGGAAAAGCCGTCGACGGTTAAGGGAATCTTCGCAGATGTTTCAAAGTGGGATAAGATCTTTATAACTTCATGCATAATTGCAGTCTTGTTGGATCCATTGTTCTTTTACATTCCATATATCCATGAAGATAACAAGTGCCTTGGAAAAGACAAGACTTTGGGGATTGCAGCTATTCTTCTGCGCTCACTCACAGATATCACTTTCATAGTGAATATTACATATCAGATTCGTGAGTGGATTAAAACTGGTTCCATTAAAATCCAGAAAGCTGGTCTACCCTCCAAGGATGTAGAAGATCAAAGACCAACCATAGTCTCGGAAGATTCGATTGATAAAGGAGAGTGCACTCAATTTGCTGAGGAAGTCGTCGGGATATTTAGCCGAACAAAAAAGAAAATAGCTGGGGCAAAAAATAAGATAGCTCAGAAGTTGCAGTGGTTGACCCTCCCCGTGTTTATTGACATCCTTGCTGTTCTTCCCCTCCCACAAACACTAATGCAGTTTGAAACTACAAAATGGGAGGAGATAAGACGGAAGATTGAAATGAAAAGGCTCGATCTAGAAGTGTGGATGCAAAGAAATAAAATCCCGAATGAGCTGAAGAAAAAGATCATTAAGAGCATAAAAAAGAAGTTGGAAGAAGACAAAGATGCCAATCTTGAAAATCTATTCAGTATTCTTCCATGGGATACCAGAAAAGACCTTAAGCGTTTTCTCTGCGTGAAAGCGCTAAGAAATGAGCCGATGCTCAAAGATGCTAATCCAAAAGTGGTGAAAATGATCTGCGACTATCTGAAGCCGGTGATGTATGTGGAGAAAAGCAGTATCTTTCAAGCCGGAGAACCACTCGACATGATGCTTTTCATAACGCAAGGCACTGTTTGGACCTATTCGAGTAGTAGTACAAGTGATGATGCTTCTCTAACAGGAAAACAAAAACTGGGCAGTGCTTCTCCATTAATGATCAACAAGTCACTCAAGGAAGGCAATTCTTATGGAGTTGAACAACTTCTACAATGGGTAGAAGTAGCCGACGACCATTTCTCCAACCTTCCTTGCCTGAACGAGAATGTGAGATCTCATTCAAAAGTGGAAGGCTTTACACTCATGGCCAGCGACCTAAGAAAGGCAGCCATCAAATGCCAAGGCATTTGGAACTTCATCAATGCCCCCAATCCTCAAGAAAGAGAGGAGGTGGCACGTACTACCATAGCCGCAGCAGTCCGTCGTTTCCGAAGTCCGGATCAAAGCCGTCGGCAGTTGGGGCTCGGAACTCGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

485

Amino Acids

55.24

Weight (kDa)

9.08

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014826)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G312600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336901
rosa_laevigata	RLG00000029326
rosa_multiflora	Rmu_sc0002067.1_g000001 Rmu_sc0002798.1_g000007 Rmu_sc0003688.1_g000007 Rmu_sc0004920.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278740 Rroxscaffold_4G00278780 Rroxscaffold_4G00315270
rosa_rugosa	Rorug01G0128700
rosa_samantha	Rh1CG140800 Rh1CG422100 Rh1CG422400 Rh1DG156700
rosa_wichuraiana	Rw1G012090 Rw1G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccI	GTMKAC	2 cut(s)	185, 448
AccIII	TCCGGA	1 cut(s)	1414
AciI	CCGC	3 cut(s)	47, 165, 1389
AclWI	GGATC	3 cut(s)	260, 273, 1425
AcoI	YGGCCR	2 cut(s)	91, 1284
AcuI	CTGAAG	2 cut(s)	794, 989
AfaI	GTAC	2 cut(s)	1078, 1378
AfeI	AGCGCT	1 cut(s)	903
AfiI	CCNNNNNNNGG	4 cut(s)	89, 171, 1300, 1414
AflII	CTTAAG	1 cut(s)	878
AgsI	TTSAA	7 cut(s)	216, 680, 716, 836, 1007, 1178, 1260
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	5 cut(s)	344, 443, 575, 596, 772
AluI	AGCT	5 cut(s)	344, 443, 575, 596, 772
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	493
Alw44I	GTGCAC	1 cut(s)	517
AlwI	GGATC	3 cut(s)	260, 273, 1425
Aor13HI	TCCGGA	1 cut(s)	1414
Aor51HI	AGCGCT	1 cut(s)	903
AoxI	GGCC	3 cut(s)	79, 91, 1284
ApaLI	GTGCAC	1 cut(s)	517
ApeKI	GCWGC	3 cut(s)	341, 1304, 1391
AseI	ATTAAT	1 cut(s)	1133
Asp700I	GAANNNNTTC	1 cut(s)	1182
AspLEI	GCGC	2 cut(s)	357, 904
AspS9I	GGNCC	2 cut(s)	80, 1059
AsuHPI	GGTGA	3 cut(s)	144, 958, 988
AvaII	GGWCC	1 cut(s)	1059
BaeGI	GKGCMC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	1286
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	1443
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	521
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	353, 1316, 1403
BccI	CCATC	1 cut(s)	1316
BceAI	ACGGC	2 cut(s)	166, 1410
BciVI	GTATCC	1 cut(s)	856
BclI	TGATCA	1 cut(s)	1137
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	734
BfoI	RGCGCY	1 cut(s)	905
BfrI	CTTAAG	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	856
BglII	AGATCT	2 cut(s)	228, 1250
BisI	GCNGC	5 cut(s)	165, 342, 1305, 1389, 1392
BlsI	GCNGC	5 cut(s)	166, 343, 1306, 1390, 1393
Bme18I	GGWCC	1 cut(s)	1059
BmgT120I	GGNCC	2 cut(s)	80, 1059
BmiI	GGNNCC	4 cut(s)	82, 117, 267, 424
BmrI	ACTGGG	1 cut(s)	1124
BmsI	GCATC	6 cut(s)	735, 814, 909, 919, 1020, 1078
BmuI	ACTGGG	1 cut(s)	1124
BpiI	GAAGAC	1 cut(s)	822
BplI	GAGNNNNNCTC	2 cut(s)	1005, 1037
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	1136, 1338
BsaAI	YACGTR	1 cut(s)	1376
BsaBI	GATNNNNATC	2 cut(s)	828, 933
BsaJI	CCNNGG	5 cut(s)	58, 313, 456, 857, 1318
BsaWI	WCCGGW	1 cut(s)	1414
BsaXI	ACNNNNNCTCC	2 cut(s)	1202, 1232
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 171, 1300, 1414
Bse118I	RCCGGY	1 cut(s)	973
Bse1I	ACTGG	2 cut(s)	424, 1119
Bse8I	GATNNNNATC	2 cut(s)	828, 933
BseAI	TCCGGA	1 cut(s)	1414
BseDI	CCNNGG	5 cut(s)	58, 313, 456, 857, 1318
BseGI	GGATG	3 cut(s)	466, 636, 750
BseJI	GATNNNNATC	2 cut(s)	828, 933
BseLI	CCNNNNNNNGG	4 cut(s)	89, 171, 1300, 1414
BseMII	CTCAG	4 cut(s)	90, 156, 522, 611
BseNI	ACTGG	2 cut(s)	424, 1119
BseRI	GAGGAG	2 cut(s)	710, 1379
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	3 cut(s)	353, 1316, 1403
BseYI	CCCAGC	1 cut(s)	575
BshFI	GGCC	3 cut(s)	81, 93, 1286
BsiHKAI	GWGCWC	1 cut(s)	521
BsiSI	CCGG	3 cut(s)	974, 1011, 1415
BslI	CCNNNNNNNGG	4 cut(s)	89, 171, 1300, 1414
BsmAI	GTCTC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	81, 93, 1286
Bsp1286I	GDGCHC	2 cut(s)	521, 1443
Bsp13I	TCCGGA	1 cut(s)	1414
Bsp143I	GATC	9 cut(s)	228, 265, 469, 730, 783, 954, 1137, 1250, 1417
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	3 cut(s)	47, 165, 1389
BspANI	GGCC	3 cut(s)	81, 93, 1286
BspCNI	CTCAG	4 cut(s)	89, 155, 523, 610
BspEI	TCCGGA	1 cut(s)	1414
BspLI	GGNNCC	4 cut(s)	82, 117, 267, 424
BspPI	GGATC	3 cut(s)	260, 273, 1425
BspTI	CTTAAG	1 cut(s)	878
BsrFI	RCCGGY	1 cut(s)	973
BsrI	ACTGG	2 cut(s)	424, 1119
BssAI	RCCGGY	1 cut(s)	973
BssECI	CCNNGG	5 cut(s)	58, 313, 456, 857, 1318
BssMI	GATC	9 cut(s)	228, 265, 469, 730, 783, 954, 1137, 1250, 1417
BssT1I	CCWWGG	4 cut(s)	313, 456, 857, 1318
Bst4CI	ACNGT	3 cut(s)	62, 190, 1054
BstAFI	CTTAAG	1 cut(s)	878
BstBAI	YACGTR	1 cut(s)	1376
BstC8I	GCNNGC	2 cut(s)	139, 1288
BstDEI	CTNAG	6 cut(s)	76, 142, 531, 597, 905, 1295
BstDSI	CCRYGG	2 cut(s)	58, 857
BstEII	GGTNACC	1 cut(s)	62
BstENI	CCTNNNNNAGG	1 cut(s)	1298
BstF5I	GGATG	3 cut(s)	466, 636, 750
BstH2I	RGCGCY	1 cut(s)	905
BstHHI	GCGC	2 cut(s)	357, 904
BstKTI	GATC	9 cut(s)	231, 268, 472, 733, 786, 957, 1140, 1253, 1420
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	9 cut(s)	228, 265, 469, 730, 783, 954, 1137, 1250, 1417
BstMWI	GCNNNNNNNGC	1 cut(s)	1438
BstPI	GGTNACC	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	353, 1316, 1403
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	3 cut(s)	228, 265, 1250
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	3 cut(s)	228, 265, 1250
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	3 cut(s)	81, 93, 1286
BtgI	CCRYGG	2 cut(s)	58, 857
BtsCI	GGATG	3 cut(s)	466, 636, 750
BtsI	GCAGTG	2 cut(s)	614, 1126
BtsIMutI	CAGTG	3 cut(s)	614, 1050, 1126
Cac8I	GCNNGC	2 cut(s)	139, 1288
CfoI	GCGC	2 cut(s)	357, 904
Cfr10I	RCCGGY	1 cut(s)	973
Cfr13I	GGNCC	2 cut(s)	80, 1059
Csp6I	GTAC	2 cut(s)	1077, 1377
CviAII	CATG	6 cut(s)	23, 243, 296, 858, 1027, 1282
CviQI	GTAC	2 cut(s)	1077, 1377
DdeI	CTNAG	6 cut(s)	76, 142, 531, 597, 905, 1295
DpnI	GATC	9 cut(s)	230, 267, 471, 732, 785, 956, 1139, 1252, 1419
DpnII	GATC	9 cut(s)	228, 265, 469, 730, 783, 954, 1137, 1250, 1417
EaeI	YGGCCR	2 cut(s)	91, 1284
Eco130I	CCWWGG	4 cut(s)	313, 456, 857, 1318
Eco24I	GRGCYC	1 cut(s)	1443
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	1059
Eco47III	AGCGCT	1 cut(s)	903
Eco57I	CTGAAG	2 cut(s)	794, 989
Eco91I	GGTNACC	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	1298
EcoO109I	RGGNCCY	1 cut(s)	80
EcoO65I	GGTNACC	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	4 cut(s)	313, 456, 857, 1318
EcoT22I	ATGCAT	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	1443
ErhI	CCWWGG	4 cut(s)	313, 456, 857, 1318
FaeI	CATG	6 cut(s)	26, 246, 299, 861, 1030, 1285
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	6 cut(s)	22, 242, 295, 857, 1026, 1281
FauI	CCCGC	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	1137
FblI	GTMKAC	2 cut(s)	185, 448
Fnu4HI	GCNGC	5 cut(s)	165, 342, 1305, 1389, 1392
FokI	GGATG	3 cut(s)	473, 623, 757
FriOI	GRGCYC	1 cut(s)	1443
Fsp4HI	GCNGC	5 cut(s)	165, 342, 1305, 1389, 1392
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	2 cut(s)	356, 903
GluI	GCNGC	5 cut(s)	165, 342, 1305, 1389, 1392
GsaI	CCCAGC	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	905
HaeIII	GGCC	3 cut(s)	81, 93, 1286
HapII	CCGG	3 cut(s)	974, 1011, 1415
HhaI	GCGC	2 cut(s)	357, 904
Hin1II	CATG	6 cut(s)	26, 246, 299, 861, 1030, 1285
Hin6I	GCGC	2 cut(s)	355, 902
HinP1I	GCGC	2 cut(s)	355, 902
HincII	GTYRAC	2 cut(s)	186, 615
HindII	GTYRAC	2 cut(s)	186, 615
HinfI	GANTC	4 cut(s)	146, 198, 400, 497
HpaII	CCGG	3 cut(s)	974, 1011, 1415
HphI	GGTGA	3 cut(s)	144, 958, 988
Hpy166II	GTNNAC	4 cut(s)	186, 449, 519, 615
Hpy188I	TCNGA	8 cut(s)	115, 145, 399, 493, 600, 969, 1409, 1445
Hpy188III	TCNNGA	8 cut(s)	404, 436, 544, 734, 763, 833, 1355, 1415
Hpy8I	GTNNAC	4 cut(s)	186, 449, 519, 615
Hpy99I	CGWCG	7 cut(s)	21, 187, 190, 545, 1211, 1404, 1431
HpyAV	CCTTC	5 cut(s)	98, 129, 1151, 1235, 1262
HpyCH4III	ACNGT	3 cut(s)	62, 190, 1054
HpyCH4IV	ACGT	1 cut(s)	1375
HpyCH4V	TGCA	7 cut(s)	246, 254, 341, 519, 607, 673, 748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1438
HpyF3I	CTNAG	6 cut(s)	76, 142, 531, 597, 905, 1295
HpySE526I	ACGT	1 cut(s)	1375
Hsp92II	CATG	6 cut(s)	26, 246, 299, 861, 1030, 1285
HspAI	GCGC	2 cut(s)	355, 902
Kpn2I	TCCGGA	1 cut(s)	1414
Ksp22I	TGATCA	1 cut(s)	1137
Kzo9I	GATC	9 cut(s)	228, 265, 469, 730, 783, 954, 1137, 1250, 1417
Lsp1109I	GCAGC	3 cut(s)	353, 1316, 1403
LweI	GCATC	6 cut(s)	735, 814, 909, 919, 1020, 1078
MaeI	CTAG	1 cut(s)	734
MaeII	ACGT	1 cut(s)	1375
MaeIII	GTNAC	3 cut(s)	62, 71, 1146
MalI	GATC	9 cut(s)	230, 267, 471, 732, 785, 956, 1139, 1252, 1419
MboI	GATC	9 cut(s)	228, 265, 469, 730, 783, 954, 1137, 1250, 1417
MflI	RGATCY	3 cut(s)	228, 265, 1250
MhlI	GDGCHC	2 cut(s)	521, 1443
MlsI	TGGCCA	1 cut(s)	1286
MluCI	AATT	4 cut(s)	96, 249, 524, 1162
MluNI	TGGCCA	1 cut(s)	1286
MmeI	TCCRAC	3 cut(s)	243, 789, 1245
MnlI	CCTC	8 cut(s)	463, 526, 629, 665, 688, 1357, 1360, 1362
Mox20I	TGGCCA	1 cut(s)	1286
Mph1103I	ATGCAT	1 cut(s)	248
MroI	TCCGGA	1 cut(s)	1414
MroXI	GAANNNNTTC	1 cut(s)	1182
MscI	TGGCCA	1 cut(s)	1286
MseI	TTAA	6 cut(s)	192, 414, 429, 789, 879, 1133
Msp20I	TGGCCA	1 cut(s)	1286
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	3 cut(s)	974, 1011, 1415
MwoI	GCNNNNNNNGC	1 cut(s)	1438
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	9 cut(s)	228, 265, 469, 730, 783, 954, 1137, 1250, 1417
NlaIII	CATG	6 cut(s)	26, 246, 299, 861, 1030, 1285
NlaIV	GGNNCC	4 cut(s)	82, 117, 267, 424
NmuCI	GTSAC	1 cut(s)	1146
NsiI	ATGCAT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	2 cut(s)	119, 497
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	4 cut(s)	146, 198, 400, 497
PkrI	GCNGC	5 cut(s)	166, 343, 1306, 1390, 1393
Ppu21I	YACGTR	1 cut(s)	1376
PshBI	ATTAAT	1 cut(s)	1133
PsiI	TTATAA	1 cut(s)	236
PspEI	GGTNACC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	575
PspN4I	GGNNCC	4 cut(s)	82, 117, 267, 424
PspPI	GGNCC	2 cut(s)	80, 1059
PsrI	GAACNNNNNNTAC	2 cut(s)	1170, 1202
PsuI	RGATCY	3 cut(s)	228, 265, 1250
RsaI	GTAC	2 cut(s)	1078, 1378
RsaNI	GTAC	2 cut(s)	1077, 1377
SalI	GTCGAC	1 cut(s)	184
SaqAI	TTAA	6 cut(s)	192, 414, 429, 789, 879, 1133
SatI	GCNGC	5 cut(s)	165, 342, 1305, 1389, 1392
Sau3AI	GATC	9 cut(s)	228, 265, 469, 730, 783, 954, 1137, 1250, 1417
Sau96I	GGNCC	2 cut(s)	80, 1059
SduI	GDGCHC	2 cut(s)	521, 1443
SfaNI	GCATC	6 cut(s)	735, 814, 909, 919, 1020, 1078
SgrDI	CGTCGACG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	1059
SmlI	CTYRAG	3 cut(s)	878, 1151, 1353
SmoI	CTYRAG	3 cut(s)	878, 1151, 1353
Sse9I	AATT	4 cut(s)	96, 249, 524, 1162
SsiI	CCGC	3 cut(s)	47, 165, 1389
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	1 cut(s)	734
StyI	CCWWGG	4 cut(s)	313, 456, 857, 1318
TaaI	ACNGT	3 cut(s)	62, 190, 1054
TaiI	ACGT	1 cut(s)	1378
TaqI	TCGA	6 cut(s)	122, 185, 500, 729, 1023, 1067
TasI	AATT	4 cut(s)	96, 249, 524, 1162
TatI	WGTACW	1 cut(s)	1076
TauI	GCSGC	2 cut(s)	167, 1391
TfiI	GAWTC	4 cut(s)	146, 198, 400, 497
Tru1I	TTAA	6 cut(s)	192, 414, 429, 789, 879, 1133
Tru9I	TTAA	6 cut(s)	192, 414, 429, 789, 879, 1133
TscAI	CASTG	3 cut(s)	614, 1057, 1126
TseFI	GTSAC	1 cut(s)	1146
TseI	GCWGC	3 cut(s)	341, 1304, 1391
Tsp45I	GTSAC	1 cut(s)	1146
TspDTI	ATGAA	7 cut(s)	117, 231, 312, 367, 734, 1027, 1324
TspGWI	ACGGA	3 cut(s)	20, 721, 1388
TspRI	CASTG	3 cut(s)	614, 1057, 1126
Vha464I	CTTAAG	1 cut(s)	878
VneI	GTGCAC	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	1059
VspI	ATTAAT	1 cut(s)	1133
XagI	CCTNNNNNAGG	1 cut(s)	1298
XbaI	TCTAGA	1 cut(s)	733
XmiI	GTMKAC	2 cut(s)	185, 448
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	1 cut(s)	734
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.