Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014826

Physical Location & Seq

Genomic Coordinates Forward (+)

1615945 .. 1620113

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGTCACGCTCATACTACCGTCGGCAATACCAACGACCATCAACGGTGTGACCTACGGAAACATCGCCGGACGGGCTACCGCCCGAGCTCCGGCGCACCCCCGGATCACCTCCGACGCGCTGCCACGGGCCGTACCAAGACAGCCTCGCCGAAGCATCAAAATCTGGAACCGAAGCATGAGCCGATGCTCAAAGATGCTGATCCAAAAGTGGTGAAAATGATCTGCGACTATCTGAAGCCGGTGATGTATGGGAAGAAGAGCAATATCTTTCAAGTCGGAGAACCATTCGACATGATGCTTTTCATAACACAAGGCAATGTTTGGACCTATTCGAGTAGTAGCACTAGTGATGATACTTCTCTAACCGGAAAACAAAAATTGGGTAGCGCTGCTCCATCAATGATCACGAAGTCACTCAAGGAAGGCGATTCTTATGGAGCTGAACAACTTCTACATTCTGGCAGTGGGCAGATTTTGATTACGGGACTTGACCTTTGTGCTCGGGGTGATAAGGCATTTGAGGATAGATATGTGGTTGAGGCCAGTACATTTGAGGAGGATAAGAAGGCATCTAGAAGGACGGTTGCTGCAAAGGCTAAGAAGATTGTTGTGAAGGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

208

Amino Acids

22.95

Weight (kDa)

9.44

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014826)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G312600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336901
rosa_laevigata	RLG00000029326
rosa_multiflora	Rmu_sc0002067.1_g000001 Rmu_sc0002798.1_g000007 Rmu_sc0003688.1_g000007 Rmu_sc0004920.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278740 Rroxscaffold_4G00278780 Rroxscaffold_4G00315270
rosa_rugosa	Rorug01G0128700
rosa_samantha	Rh1CG140800 Rh1CG422100 Rh1CG422400 Rh1DG156700
rosa_wichuraiana	Rw1G012090 Rw1G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	2 cut(s)	114, 197
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	2 cut(s)	136, 550
AfeI	AGCGCT	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	275
AhlI	ACTAGT	1 cut(s)	347
AluBI	AGCT	2 cut(s)	90, 443
AluI	AGCT	2 cut(s)	90, 443
Alw21I	GWGCWC	2 cut(s)	92, 505
AlwI	GGATC	2 cut(s)	114, 197
Ama87I	CYCGRG	2 cut(s)	85, 504
Aor51HI	AGCGCT	1 cut(s)	391
AoxI	GGCC	2 cut(s)	130, 543
ApeKI	GCWGC	3 cut(s)	122, 392, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	3 cut(s)	98, 122, 392
AspS9I	GGNCC	2 cut(s)	130, 327
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	4 cut(s)	101, 226, 256, 521
AvaI	CYCGRG	2 cut(s)	85, 504
AvaII	GGWCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	92
Bbv12I	GWGCWC	2 cut(s)	92, 505
BbvI	GCAGC	3 cut(s)	109, 379, 577
BccI	CCATC	2 cut(s)	48, 406
BceAI	ACGGC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	104
BcuI	ACTAGT	1 cut(s)	347
BfaI	CTAG	2 cut(s)	348, 576
BfoI	RGCGCY	1 cut(s)	393
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	3 cut(s)	123, 393, 591
BlsI	GCNGC	3 cut(s)	124, 394, 592
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	327
BmeT110I	CYCGRG	2 cut(s)	85, 504
BmgT120I	GGNCC	2 cut(s)	130, 327
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	5 cut(s)	166, 177, 187, 288, 581
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	102, 126
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	325
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	102, 126
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	109, 379, 577
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	132, 545
BsiHKAI	GWGCWC	2 cut(s)	92, 505
BsiHKCI	CYCGRG	2 cut(s)	85, 504
BsiSI	CCGG	5 cut(s)	70, 93, 104, 242, 369
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	132, 545
BsoBI	CYCGRG	2 cut(s)	85, 504
Bsp1286I	GDGCHC	2 cut(s)	92, 505
Bsp143I	GATC	4 cut(s)	106, 202, 222, 405
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	132, 545
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	114, 197
BspQI	GCTCTTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	102, 126
BssMI	GATC	4 cut(s)	106, 202, 222, 405
Bst4CI	ACNGT	3 cut(s)	22, 48, 586
Bst6I	CTCTTC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	3 cut(s)	98, 122, 392
BstKTI	GATC	4 cut(s)	109, 205, 225, 408
BstMBI	GATC	4 cut(s)	106, 202, 222, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 596
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	109, 379, 577
BsuRI	GGCC	2 cut(s)	132, 545
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	50
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	472
CfoI	GCGC	3 cut(s)	98, 122, 392
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	130, 327
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	135, 549
CviAII	CATG	2 cut(s)	179, 295
CviJI	RGCY	9 cut(s)	78, 90, 132, 146, 184, 241, 443, 545, 599
CviKI_1	RGCY	9 cut(s)	78, 90, 132, 146, 184, 241, 443, 545, 599
CviQI	GTAC	2 cut(s)	135, 549
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	4 cut(s)	108, 204, 224, 407
DpnII	GATC	4 cut(s)	106, 202, 222, 405
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	327
Eco47III	AGCGCT	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	257
Eco88I	CYCGRG	2 cut(s)	85, 504
EcoICRI	GAGCTC	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	92
FaeI	CATG	2 cut(s)	182, 298
FaiI	YATR	7 cut(s)	15, 180, 252, 296, 308, 438, 534
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	2 cut(s)	178, 294
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	123, 393, 591
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	123, 393, 591
FspBI	CTAG	2 cut(s)	348, 576
GlaI	GCGC	3 cut(s)	97, 121, 391
GluI	GCNGC	3 cut(s)	123, 393, 591
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	132, 545
HapII	CCGG	5 cut(s)	70, 93, 104, 242, 369
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	3 cut(s)	98, 122, 392
Hin1II	CATG	2 cut(s)	182, 298
Hin6I	GCGC	3 cut(s)	96, 120, 390
HinP1I	GCGC	3 cut(s)	96, 120, 390
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	5 cut(s)	70, 93, 104, 242, 369
HphI	GGTGA	4 cut(s)	101, 226, 256, 521
Hpy188I	TCNGA	3 cut(s)	116, 237, 281
Hpy188III	TCNNGA	3 cut(s)	167, 409, 576
Hpy99I	CGWCG	2 cut(s)	26, 120
HpyAV	CCTTC	4 cut(s)	419, 562, 573, 610
HpyCH4III	ACNGT	3 cut(s)	22, 48, 586
HpyCH4V	TGCA	1 cut(s)	593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 596
HpyF3I	CTNAG	1 cut(s)	600
Hsp92II	CATG	2 cut(s)	182, 298
HspAI	GCGC	3 cut(s)	96, 120, 390
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	106, 202, 222, 405
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	3 cut(s)	95, 400, 440
LpnPI	CCDG	8 cut(s)	83, 106, 117, 152, 255, 382, 447, 559
Lsp1109I	GCAGC	3 cut(s)	109, 379, 577
LweI	GCATC	5 cut(s)	166, 177, 187, 288, 581
MaeI	CTAG	2 cut(s)	348, 576
MaeIII	GTNAC	3 cut(s)	5, 50, 414
MalI	GATC	4 cut(s)	108, 204, 224, 407
MboI	GATC	4 cut(s)	106, 202, 222, 405
MboII	GAAGA	3 cut(s)	268, 271, 616
MhlI	GDGCHC	2 cut(s)	92, 505
MluCI	AATT	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	139, 259
MnlI	CCTC	6 cut(s)	122, 157, 517, 535, 550, 553
MroXI	GAANNNNTTC	1 cut(s)	450
MspI	CCGG	5 cut(s)	70, 93, 104, 242, 369
MspR9I	CCNGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	75, 596
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	106, 202, 222, 405
NlaIII	CATG	2 cut(s)	182, 298
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	3 cut(s)	5, 50, 414
PciSI	GCTCTTC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	124, 394, 592
Psp124BI	GAGCTC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	130, 327
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
RsaI	GTAC	2 cut(s)	136, 550
RsaNI	GTAC	2 cut(s)	135, 549
SacI	GAGCTC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	254
SatI	GCNGC	3 cut(s)	123, 393, 591
Sau3AI	GATC	4 cut(s)	106, 202, 222, 405
Sau96I	GGNCC	2 cut(s)	130, 327
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	92, 505
SetI	ASST	7 cut(s)	57, 92, 114, 332, 445, 498, 621
SfaNI	GCATC	5 cut(s)	166, 177, 187, 288, 581
SinI	GGWCC	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SpeI	ACTAGT	1 cut(s)	347
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	2 cut(s)	348, 576
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	3 cut(s)	22, 48, 586
TaqI	TCGA	2 cut(s)	291, 335
TasI	AATT	1 cut(s)	380
TatI	WGTACW	1 cut(s)	548
TfiI	GAWTC	1 cut(s)	431
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	3 cut(s)	5, 50, 414
TseI	GCWGC	3 cut(s)	122, 392, 590
Tsp45I	GTSAC	3 cut(s)	5, 50, 414
TspDTI	ATGAA	1 cut(s)	295
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	327
XbaI	TCTAGA	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	2 cut(s)	348, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.