Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014826

Physical Location & Seq

Genomic Coordinates Forward (+)

32555965 .. 32561324

Gene Structure 5360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG156700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATGCTCAACTCGCAGGAGGAAGACCATGTTGAACTGAGCATAAACCCAGATTTCCCGCCAGATTACCACGGTTACCCAAGTTACTCAGGCCCCAAAAATGGCCGAATTGATGAAGGGAAATCGGAACCTTCGAGTATTGAGAGAGCACGCTCAGAATCTTCACCACTACTCGCCGCTATATGGGAAAAGCCGTCGACGGTTAAGGGAATCTTCGCAGATGTTTCAAAGTGGGATAAGATCTTTATAACTTCATGCATAATTGCAGTCTTGCTGGATCCATTGTTCTTTTACATTCCATATATCCATGAAGATAACAAGTGCCTTGGAAAAGACAAGACTTTGGGGATTGCAGCTATTCTTCTGCGCTCACTCACAGATATCACTTTCATAGTGAATATTACATATCAGATTCGTGAGTGGATTAAAACTGGTTCCATTAAAATCCAGAAAGCTGGTCCACCCTCCAAGGATGTAGAAGATCAGAGACCAACCATAGTCTCGGAAGATTCGATTGACAAAGGAGAGTGCACTCAATTTGCTGAGGAAGTCGTAGGGATATTTAGCCGAACAAAAAAGAAAACAGCTGGGGCAAAAAATAAGATAGCTCAGAAGTTGCCGTGGTTGACCCTCCCCGTGTTTATTGACATTCTTGCTGTTCTTCCCCTCCCACAATTGTTGATTTGTCAACTTCATCACATAGCTAGCAATAATCCCCAAATTCTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

243

Amino Acids

27.17

Weight (kDa)

5.98

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014826)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G312600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336901
rosa_laevigata	RLG00000029326
rosa_multiflora	Rmu_sc0002067.1_g000001 Rmu_sc0002798.1_g000007 Rmu_sc0003688.1_g000007 Rmu_sc0004920.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278740 Rroxscaffold_4G00278780 Rroxscaffold_4G00315270
rosa_rugosa	Rorug01G0128700
rosa_samantha	Rh1CG140800 Rh1CG422100 Rh1CG422400 Rh1DG156700
rosa_wichuraiana	Rw1G012090 Rw1G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	197
AciI	CCGC	2 cut(s)	59, 177
AclWI	GGATC	2 cut(s)	272, 285
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	720
AfiI	CCNNNNNNNGG	2 cut(s)	101, 183
AgsI	TTSAA	2 cut(s)	35, 228
AloI	GAACNNNNNNTCC	2 cut(s)	269, 301
AluBI	AGCT	5 cut(s)	356, 455, 587, 608, 704
AluI	AGCT	5 cut(s)	356, 455, 587, 608, 704
Alw21I	GWGCWC	2 cut(s)	151, 533
Alw26I	GTCTC	2 cut(s)	481, 505
Alw44I	GTGCAC	1 cut(s)	529
AlwI	GGATC	2 cut(s)	272, 285
AoxI	GGCC	2 cut(s)	91, 103
ApaLI	GTGCAC	1 cut(s)	529
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	92, 458
AsuHPI	GGTGA	1 cut(s)	156
AsuNHI	GCTAGC	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	533
BamHI	GGATCC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	151, 533
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	365
BceAI	ACGGC	2 cut(s)	178, 604
BcoDI	GTCTC	2 cut(s)	481, 505
BfaI	CTAG	2 cut(s)	705, 730
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	2 cut(s)	177, 354
BlsI	GCNGC	2 cut(s)	178, 355
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	92, 458
BmiI	GGNNCC	4 cut(s)	94, 129, 279, 436
BmtI	GCTAGC	1 cut(s)	708
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	4 cut(s)	70, 325, 468, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 183
Bse1I	ACTGG	1 cut(s)	436
BseDI	CCNNGG	4 cut(s)	70, 325, 468, 620
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	101, 183
BseMII	CTCAG	5 cut(s)	29, 102, 168, 534, 623
BseNI	ACTGG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	365
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	2 cut(s)	93, 105
BsiHKAI	GWGCWC	2 cut(s)	151, 533
BslI	CCNNNNNNNGG	2 cut(s)	101, 183
BsmAI	GTCTC	2 cut(s)	481, 505
BsnI	GGCC	2 cut(s)	93, 105
Bso31I	GGTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	151, 533
Bsp143I	GATC	3 cut(s)	240, 277, 481
BspACI	CCGC	2 cut(s)	59, 177
BspANI	GGCC	2 cut(s)	93, 105
BspCNI	CTCAG	5 cut(s)	30, 101, 167, 535, 622
BspLI	GGNNCC	4 cut(s)	94, 129, 279, 436
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	2 cut(s)	272, 285
BspTNI	GGTCTC	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	4 cut(s)	70, 325, 468, 620
BssMI	GATC	3 cut(s)	240, 277, 481
BssT1I	CCWWGG	2 cut(s)	325, 468
Bst4CI	ACNGT	2 cut(s)	74, 202
BstC8I	GCNNGC	2 cut(s)	151, 706
BstDEI	CTNAG	5 cut(s)	38, 88, 154, 543, 609
BstDSI	CCRYGG	2 cut(s)	70, 620
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	3 cut(s)	243, 280, 484
BstMAI	GTCTC	2 cut(s)	481, 505
BstMBI	GATC	3 cut(s)	240, 277, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstPI	GGTNACC	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	2 cut(s)	240, 277
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	2 cut(s)	240, 277
BsuRI	GGCC	2 cut(s)	93, 105
BtgI	CCRYGG	2 cut(s)	70, 620
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	151, 706
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	92, 458
CspCI	CAANNNNNGTGG	2 cut(s)	660, 695
CviAII	CATG	3 cut(s)	29, 255, 308
CviJI	RGCY	9 cut(s)	93, 105, 193, 356, 455, 567, 587, 608, 704
CviKI_1	RGCY	9 cut(s)	93, 105, 193, 356, 455, 567, 587, 608, 704
DdeI	CTNAG	5 cut(s)	38, 88, 154, 543, 609
DpnI	GATC	3 cut(s)	242, 279, 483
DpnII	GATC	3 cut(s)	240, 277, 481
EaeI	YGGCCR	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	325, 468
Eco31I	GGTCTC	1 cut(s)	481
Eco32I	GATATC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	458
Eco91I	GGTNACC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	74
EcoRV	GATATC	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	325, 468
EcoT22I	ATGCAT	1 cut(s)	260
ErhI	CCWWGG	2 cut(s)	325, 468
FaeI	CATG	3 cut(s)	32, 258, 311
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	3 cut(s)	28, 254, 307
FauI	CCCGC	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	177, 354
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	177, 354
FspBI	CTAG	2 cut(s)	705, 730
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	177, 354
GsaI	CCCAGC	1 cut(s)	591
HaeIII	GGCC	2 cut(s)	93, 105
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	3 cut(s)	32, 258, 311
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	3 cut(s)	198, 627, 689
HindII	GTYRAC	3 cut(s)	198, 627, 689
HinfI	GANTC	4 cut(s)	158, 210, 412, 509
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	5 cut(s)	198, 461, 531, 627, 689
Hpy188I	TCNGA	6 cut(s)	127, 157, 411, 486, 505, 612
Hpy188III	TCNNGA	2 cut(s)	416, 448
Hpy8I	GTNNAC	5 cut(s)	198, 461, 531, 627, 689
Hpy99I	CGWCG	2 cut(s)	199, 202
HpyAV	CCTTC	2 cut(s)	110, 141
HpyCH4III	ACNGT	2 cut(s)	74, 202
HpyCH4V	TGCA	4 cut(s)	258, 266, 353, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	5 cut(s)	38, 88, 154, 543, 609
Hsp92II	CATG	3 cut(s)	32, 258, 311
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	240, 277, 481
LpnPI	CCDG	9 cut(s)	2, 63, 75, 75, 260, 417, 441, 461, 573
Lsp1109I	GCAGC	1 cut(s)	365
MaeI	CTAG	2 cut(s)	705, 730
MaeIII	GTNAC	2 cut(s)	74, 83
MalI	GATC	3 cut(s)	242, 279, 483
MboI	GATC	3 cut(s)	240, 277, 481
MboII	GAAGA	8 cut(s)	35, 153, 205, 323, 353, 491, 518, 653
MfeI	CAATTG	1 cut(s)	674
MflI	RGATCY	2 cut(s)	240, 277
MhlI	GDGCHC	2 cut(s)	151, 533
MluCI	AATT	5 cut(s)	108, 261, 536, 674, 720
MnlI	CCTC	5 cut(s)	13, 475, 538, 641, 677
Mph1103I	ATGCAT	1 cut(s)	260
MseI	TTAA	3 cut(s)	204, 426, 441
MspA1I	CMGCKG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	674
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	3 cut(s)	240, 277, 481
NheI	GCTAGC	1 cut(s)	704
NlaIII	CATG	3 cut(s)	32, 258, 311
NlaIV	GGNNCC	4 cut(s)	94, 129, 279, 436
NsiI	ATGCAT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 509
PfeI	GAWTC	4 cut(s)	158, 210, 412, 509
PkrI	GCNGC	2 cut(s)	178, 355
PsiI	TTATAA	1 cut(s)	248
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	587
PspN4I	GGNNCC	4 cut(s)	94, 129, 279, 436
PspPI	GGNCC	2 cut(s)	92, 458
PsuI	RGATCY	2 cut(s)	240, 277
PvuII	CAGCTG	1 cut(s)	587
SalI	GTCGAC	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	204, 426, 441
SatI	GCNGC	2 cut(s)	177, 354
Sau3AI	GATC	3 cut(s)	240, 277, 481
Sau96I	GGNCC	2 cut(s)	92, 458
SduI	GDGCHC	2 cut(s)	151, 533
SetI	ASST	6 cut(s)	133, 358, 457, 589, 610, 706
SgrDI	CGTCGACG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	458
Sse9I	AATT	5 cut(s)	108, 261, 536, 674, 720
SsiI	CCGC	2 cut(s)	59, 177
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	2 cut(s)	705, 730
StyI	CCWWGG	2 cut(s)	325, 468
TaaI	ACNGT	2 cut(s)	74, 202
TaqI	TCGA	3 cut(s)	134, 197, 512
TasI	AATT	5 cut(s)	108, 261, 536, 674, 720
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	4 cut(s)	158, 210, 412, 509
Tru1I	TTAA	3 cut(s)	204, 426, 441
Tru9I	TTAA	3 cut(s)	204, 426, 441
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	5 cut(s)	129, 243, 324, 379, 683
VneI	GTGCAC	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	1 cut(s)	720
XmiI	GTMKAC	1 cut(s)	197
XspI	CTAG	2 cut(s)	705, 730
Zsp2I	ATGCAT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.