Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014826

Physical Location & Seq

Genomic Coordinates Forward (+)

27187443 .. 27188822

Gene Structure 1380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G012160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCAGTTTGAAACTACAAAATGGGAGGAGATAAGACGGAAGATTGAAATGAAAAGGCTCGATCTAGAAGTATGGATGCAAAGAAATAAAATCCCGGATGAGCTGAGGAAAAAGATCATTAAGAGCATAAAAAAGAAGTTGGAAGAAGACAAAGATGCCAATCTTGAAAATCTATTCAGTATTCTTCCATGGGATACCAGAAAAGATCTTAAGCGTTTTCTCTGCGTGAATGCGCTAAGAAATGAGCCGATGCTCAAAGATGCTAATCCAAAAGTGGTGAAAATGATCTGCAACTATCTGAAGCCGGTGATGTATGTGGAGAAAAGCAGTATCTTTCAAGCCGGAGAACCACTCGACATGATGCTTTTCATAACGCAAGGCACTGTTTGGACCTATTCGAGTAGTAGTACAAGTGATGATACTTCTCCAACAGGAAAGCAAAAACTGGGTAGTGCTTCTCCATTAATGATCACCAAGTCACTCAAGGAAGGCAATTCTTATGGAGTTGAACAACTTTTACGATGGGTAGCAGTACCCGACCACCATTTCTCCAACCTTCCTTGCCTGAACGAGAATGTGAGATCTCATTCAAAAGTGGAAGGCTTTACACTCATGGCCAGCGACTTGAGAAAGGCAGCCATCAAATGTCAAGGCATTTGGAACTTCATCAATGCCCCCAATCCTCAAGAACGAGAGGAGGTGGCACGTACTACCATAGCCGCAGCAGTCCGTCGTTTCCGAAATCAGTTACAAGCACCAAAAAAGTCCGGATACTCGCCAATAAACATCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

264

Amino Acids

30.43

Weight (kDa)

9.51

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014826)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G312600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0336901
rosa_laevigata	RLG00000029326
rosa_multiflora	Rmu_sc0002067.1_g000001 Rmu_sc0002798.1_g000007 Rmu_sc0003688.1_g000007 Rmu_sc0004920.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278740 Rroxscaffold_4G00278780 Rroxscaffold_4G00315270
rosa_rugosa	Rorug01G0128700
rosa_samantha	Rh1CG140800 Rh1CG422100 Rh1CG422400 Rh1DG156700
rosa_wichuraiana	Rw1G012090 Rw1G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	767
AciI	CCGC	1 cut(s)	720
AcoI	YGGCCR	1 cut(s)	615
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	409, 534, 709
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	11, 47, 167, 338, 509, 591
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	767
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	2 cut(s)	635, 722
AseI	ATTAAT	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	289, 319, 463
AvaII	GGWCC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	647, 734
BccI	CCATC	2 cut(s)	516, 647
BciVI	GTATCC	2 cut(s)	187, 764
BclI	TGATCA	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	95
BfaI	CTAG	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	209
BfuI	GTATCC	2 cut(s)	187, 764
BglII	AGATCT	2 cut(s)	205, 581
BisI	GCNGC	3 cut(s)	636, 720, 723
BlsI	GCNGC	3 cut(s)	637, 721, 724
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	5 cut(s)	66, 145, 240, 250, 351
BmuI	ACTGGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
Bpu10I	CCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	3 cut(s)	467, 646, 669
BpuMI	CCSGG	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	707
BsaBI	GATNNNNATC	2 cut(s)	159, 264
BsaJI	CCNNGG	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	767
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	450
Bse8I	GATNNNNATC	2 cut(s)	159, 264
BseAI	TCCGGA	1 cut(s)	767
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	81, 103
BseJI	GATNNNNATC	2 cut(s)	159, 264
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	41, 710
BseXI	GCAGC	2 cut(s)	647, 734
BshFI	GGCC	1 cut(s)	617
BsiSI	CCGG	4 cut(s)	95, 305, 342, 768
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	617
Bsp13I	TCCGGA	1 cut(s)	767
Bsp143I	GATC	6 cut(s)	61, 114, 205, 285, 468, 581
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	1 cut(s)	720
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	1 cut(s)	96
BspEI	TCCGGA	1 cut(s)	767
BspTI	CTTAAG	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	6 cut(s)	61, 114, 205, 285, 468, 581
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	385
BstAFI	CTTAAG	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	2 cut(s)	104, 236
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	81, 103
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	6 cut(s)	64, 117, 208, 288, 471, 584
BstMBI	GATC	6 cut(s)	61, 114, 205, 285, 468, 581
BstSCI	CCNGG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	647, 734
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	205, 581
BstYI	RGATCY	2 cut(s)	205, 581
BsuI	GTATCC	2 cut(s)	187, 764
BsuRI	GGCC	1 cut(s)	617
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	81, 103
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	619
CfoI	GCGC	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	390
Csp6I	GTAC	3 cut(s)	408, 533, 708
CviAII	CATG	3 cut(s)	189, 358, 613
CviJI	RGCY	9 cut(s)	58, 103, 247, 304, 341, 603, 617, 638, 719
CviKI_1	RGCY	9 cut(s)	58, 103, 247, 304, 341, 603, 617, 638, 719
CviQI	GTAC	3 cut(s)	408, 533, 708
DdeI	CTNAG	2 cut(s)	104, 236
DpnI	GATC	6 cut(s)	63, 116, 207, 287, 470, 583
DpnII	GATC	6 cut(s)	61, 114, 205, 285, 468, 581
EaeI	YGGCCR	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	3 cut(s)	192, 361, 616
FaiI	YATR	9 cut(s)	73, 128, 190, 315, 359, 371, 501, 614, 716
FatI	CATG	3 cut(s)	188, 357, 612
FbaI	TGATCA	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	636, 720, 723
FokI	GGATG	2 cut(s)	88, 110
Fsp4HI	GCNGC	3 cut(s)	636, 720, 723
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	3 cut(s)	636, 720, 723
HaeIII	GGCC	1 cut(s)	617
HapII	CCGG	4 cut(s)	95, 305, 342, 768
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	192, 361, 616
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HpaII	CCGG	4 cut(s)	95, 305, 342, 768
HphI	GGTGA	3 cut(s)	289, 319, 463
Hpy188I	TCNGA	2 cut(s)	300, 740
Hpy188III	TCNNGA	4 cut(s)	65, 164, 686, 768
Hpy99I	CGWCG	1 cut(s)	735
HpyAV	CCTTC	3 cut(s)	482, 566, 593
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	3 cut(s)	4, 79, 291
HpyF3I	CTNAG	2 cut(s)	104, 236
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	3 cut(s)	192, 361, 616
HspAI	GCGC	1 cut(s)	233
Kpn2I	TCCGGA	1 cut(s)	767
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	6 cut(s)	61, 114, 205, 285, 468, 581
LpnPI	CCDG	9 cut(s)	108, 211, 318, 355, 417, 431, 578, 631, 781
Lsp1109I	GCAGC	2 cut(s)	647, 734
LweI	GCATC	5 cut(s)	66, 145, 240, 250, 351
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	2 cut(s)	477, 747
MalI	GATC	6 cut(s)	63, 116, 207, 287, 470, 583
MboI	GATC	6 cut(s)	61, 114, 205, 285, 468, 581
MboII	GAAGA	4 cut(s)	52, 155, 158, 176
MflI	RGATCY	2 cut(s)	205, 581
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	1 cut(s)	493
MluNI	TGGCCA	1 cut(s)	617
MmeI	TCCRAC	3 cut(s)	120, 452, 576
MnlI	CCTC	5 cut(s)	19, 99, 688, 691, 693
Mox20I	TGGCCA	1 cut(s)	617
MroI	TCCGGA	1 cut(s)	767
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	3 cut(s)	120, 210, 464
Msp20I	TGGCCA	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	4 cut(s)	95, 305, 342, 768
MspR9I	CCNGG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	6 cut(s)	61, 114, 205, 285, 468, 581
NlaIII	CATG	3 cut(s)	192, 361, 616
NmuCI	GTSAC	1 cut(s)	477
PctI	GAATGC	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	637, 721, 724
Ppu21I	YACGTR	1 cut(s)	707
PshBI	ATTAAT	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	390
PsrI	GAACNNNNNNTAC	2 cut(s)	501, 533
PsuI	RGATCY	2 cut(s)	205, 581
RsaI	GTAC	3 cut(s)	409, 534, 709
RsaNI	GTAC	3 cut(s)	408, 533, 708
SaqAI	TTAA	3 cut(s)	120, 210, 464
SatI	GCNGC	3 cut(s)	636, 720, 723
Sau3AI	GATC	6 cut(s)	61, 114, 205, 285, 468, 581
Sau96I	GGNCC	1 cut(s)	390
ScrFI	CCNGG	1 cut(s)	95
SetI	ASST	5 cut(s)	105, 395, 558, 702, 709
SfaNI	GCATC	5 cut(s)	66, 145, 240, 250, 351
SinI	GGWCC	1 cut(s)	390
SmlI	CTYRAG	4 cut(s)	209, 482, 625, 684
SmoI	CTYRAG	4 cut(s)	209, 482, 625, 684
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	1 cut(s)	720
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	3 cut(s)	60, 354, 398
TasI	AATT	1 cut(s)	493
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	1 cut(s)	722
Tru1I	TTAA	3 cut(s)	120, 210, 464
Tru9I	TTAA	3 cut(s)	120, 210, 464
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	2 cut(s)	635, 722
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	3 cut(s)	65, 358, 655
TspGWI	ACGGA	2 cut(s)	52, 719
TspRI	CASTG	1 cut(s)	388
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	390
VspI	ATTAAT	1 cut(s)	464
XbaI	TCTAGA	1 cut(s)	64
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.