Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002160.1

Orthogroup ID

OG0010615

Physical Location & Seq

Genomic Coordinates Forward (+)

55917 .. 56555

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggtttcagagtcgagtagcagtacaagtagctgccccatcaaaacggtggtggttttggtccaagagaaccgctcgttcgaccacatgctcgggtggatgaagtccctaaaccctgacatcaatggcgtcaccggttccgaatccaacctcatttccacctccgatcctaactccaaacgtgtcttcttcggcgagaactccgcctacgtcgaccctgacccaggccactccatccaagctgtctacgagcaagtcttcggcgagccatggtcggaggcctctgagtccaagaacctcgccccaacaatggaggggttcgcacaaaacgccgagacaacgcagacggggttggctgagacggtgatgaacgggttcaagccggagaacattccagtgtatagggagctggtgaaagagtttgcagtgtgtgacaggtggtttgcttcggtgccggcgtcgacgcagccgaaccggcagtacgtgcactcggggacgtcgcacggactttcagggaatgatacgatcttgctgattgaggggatgccgcagaagaccatatttgagtccgtggaggaagctggtcactctttcggaatatactatcagacccctcctgccacacttttgtacaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009405 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030054 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034480 GO:0035821 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0050896 GO:0051701 GO:0051704 GO:0051716 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0052642 GO:0055044 GO:0071496 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

212

Amino Acids

23.27

Weight (kDa)

4.75

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphoesterase	PF04185	14 - 204	1.5e-48	Phosphoesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344681 RchiOBHm_Chr2g0107051 RchiOBHm_Chr3g0478711
rosa_multiflora	Rmu_co8405135.1_g000001 Rmu_sc0002160.1_g000011 Rmu_sc0002160.1_g000014
rosa_roxburghii	Rroxscaffold_2G00125350 Rroxscaffold_2G00125360 Rroxscaffold_3G00234130 Rroxscaffold_5G00357000
rosa_samantha	Rh1AG152400 Rh1CG143400 Rh3AG045500 Rh3BG047900 Rh5CG054700 Rh5CG152100 Rh5CG498500 Rh6DG266900
rosa_wichuraiana	Rw4G036280 Rw5G006630 Rw6G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	451
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	3 cut(s)	213, 246, 461
AciI	CCGC	3 cut(s)	73, 204, 548
AclWI	GGATC	1 cut(s)	161
AcyI	GRCGYC	3 cut(s)	129, 458, 497
AfaI	GTAC	3 cut(s)	25, 482, 632
AfiI	CCNNNNNNNGG	2 cut(s)	224, 310
AflIII	ACRYGT	1 cut(s)	181
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	4 cut(s)	33, 242, 409, 581
AluI	AGCT	4 cut(s)	33, 242, 409, 581
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	329, 353
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	2 cut(s)	92, 490
AoxI	GGCC	2 cut(s)	226, 279
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	2 cut(s)	33, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsiGI	ACCGGT	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	124, 376, 424
AvaI	CYCGRG	2 cut(s)	92, 490
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	451
BbsI	GAAGAC	3 cut(s)	178, 250, 560
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	20, 478
BccI	CCATC	2 cut(s)	47, 242
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	2 cut(s)	329, 353
BglI	GCCNNNNNGGC	1 cut(s)	475
BisI	GCNGC	3 cut(s)	34, 467, 548
BlsI	GCNGC	3 cut(s)	35, 468, 549
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	2 cut(s)	92, 490
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	139, 453
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	534
BpiI	GAAGAC	3 cut(s)	178, 250, 560
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BsaAI	YACGTR	1 cut(s)	484
BsaHI	GRCGYC	3 cut(s)	129, 458, 497
BsaJI	CCNNGG	3 cut(s)	223, 269, 570
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 310
Bse118I	RCCGGY	3 cut(s)	134, 454, 474
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	223, 269, 570
BseGI	GGATG	3 cut(s)	105, 234, 549
BseLI	CCNNNNNNNGG	2 cut(s)	224, 310
BseMII	CTCAG	2 cut(s)	276, 348
BseNI	ACTGG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	2 cut(s)	20, 478
BshFI	GGCC	2 cut(s)	228, 281
BshNI	GGYRCC	1 cut(s)	451
BshTI	ACCGGT	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	2 cut(s)	92, 490
BsiSI	CCGG	4 cut(s)	135, 383, 455, 475
BslFI	GGGAC	2 cut(s)	91, 508
BslI	CCNNNNNNNGG	2 cut(s)	224, 310
BsmAI	GTCTC	2 cut(s)	329, 353
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	91, 508
BsnI	GGCC	2 cut(s)	228, 281
BsoBI	CYCGRG	2 cut(s)	92, 490
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	166, 525
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	3 cut(s)	73, 204, 548
BspANI	GGCC	2 cut(s)	228, 281
BspCNI	CTCAG	2 cut(s)	277, 349
BspLI	GGNNCC	2 cut(s)	139, 453
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	75
BsrFI	RCCGGY	3 cut(s)	134, 454, 474
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	3 cut(s)	134, 454, 474
BssECI	CCNNGG	3 cut(s)	223, 269, 570
BssMI	GATC	2 cut(s)	166, 525
BssNI	GRCGYC	3 cut(s)	129, 458, 497
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	49, 364
BstACI	GRCGYC	3 cut(s)	129, 458, 497
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstAUI	TGTACA	1 cut(s)	630
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	266, 456
BstDEI	CTNAG	2 cut(s)	285, 357
BstDSI	CCRYGG	2 cut(s)	269, 570
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	3 cut(s)	105, 234, 549
BstKTI	GATC	2 cut(s)	169, 528
BstMAI	GTCTC	2 cut(s)	329, 353
BstMBI	GATC	2 cut(s)	166, 525
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 475, 484
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	20, 478
BstV2I	GAAGAC	3 cut(s)	178, 250, 560
BsuRI	GGCC	2 cut(s)	228, 281
BtgI	CCRYGG	2 cut(s)	269, 570
BtsCI	GGATG	3 cut(s)	105, 234, 549
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	402, 432
Cac8I	GCNNGC	2 cut(s)	266, 456
Cfr10I	RCCGGY	3 cut(s)	134, 454, 474
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	3 cut(s)	118, 447, 472
Csp6I	GTAC	3 cut(s)	24, 481, 631
CspAI	ACCGGT	1 cut(s)	134
CviAII	CATG	2 cut(s)	88, 270
CviQI	GTAC	3 cut(s)	24, 481, 631
DdeI	CTNAG	2 cut(s)	285, 357
DpnI	GATC	2 cut(s)	168, 527
DpnII	GATC	2 cut(s)	166, 525
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	2 cut(s)	92, 490
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	2 cut(s)	91, 273
FaiI	YATR	5 cut(s)	89, 271, 402, 560, 601
FaqI	GGGAC	2 cut(s)	91, 508
FatI	CATG	2 cut(s)	87, 269
FblI	GTMKAC	3 cut(s)	213, 246, 461
Fnu4HI	GCNGC	3 cut(s)	34, 467, 548
FokI	GGATG	3 cut(s)	112, 221, 556
Fsp4HI	GCNGC	3 cut(s)	34, 467, 548
GluI	GCNGC	3 cut(s)	34, 467, 548
HaeIII	GGCC	2 cut(s)	228, 281
HapII	CCGG	4 cut(s)	135, 383, 455, 475
HgaI	GACGC	3 cut(s)	118, 447, 472
Hin1I	GRCGYC	3 cut(s)	129, 458, 497
Hin1II	CATG	2 cut(s)	91, 273
HincII	GTYRAC	2 cut(s)	214, 462
HindII	GTYRAC	2 cut(s)	214, 462
HinfI	GANTC	4 cut(s)	11, 143, 287, 566
HpaII	CCGG	4 cut(s)	135, 383, 455, 475
HphI	GGTGA	3 cut(s)	124, 376, 424
Hpy166II	GTNNAC	4 cut(s)	214, 247, 462, 487
Hpy188I	TCNGA	7 cut(s)	10, 142, 166, 277, 286, 596, 609
Hpy8I	GTNNAC	4 cut(s)	214, 247, 462, 487
Hpy99I	CGWCG	4 cut(s)	215, 463, 466, 502
HpyCH4III	ACNGT	2 cut(s)	49, 364
HpyCH4IV	ACGT	4 cut(s)	181, 210, 483, 497
HpyCH4V	TGCA	2 cut(s)	425, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 475, 484
HpyF3I	CTNAG	2 cut(s)	285, 357
HpySE526I	ACGT	4 cut(s)	181, 210, 483, 497
Hsp92I	GRCGYC	3 cut(s)	129, 458, 497
Hsp92II	CATG	2 cut(s)	91, 273
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	166, 525
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	2 cut(s)	20, 478
LweI	GCATC	1 cut(s)	534
MaeII	ACGT	4 cut(s)	181, 210, 483, 497
MaeIII	GTNAC	3 cut(s)	130, 431, 584
MalI	GATC	2 cut(s)	168, 527
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	2 cut(s)	166, 525
MboII	GAAGA	4 cut(s)	178, 181, 250, 565
MhlI	GDGCHC	1 cut(s)	489
MlyI	GAGTC	3 cut(s)	20, 296, 575
MmeI	TCCRAC	2 cut(s)	171, 255
MnlI	CCTC	9 cut(s)	161, 172, 271, 292, 307, 308, 532, 568, 624
MroNI	GCCGGC	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	4 cut(s)	135, 383, 455, 475
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	329, 475, 484
NaeI	GCCGGC	1 cut(s)	456
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	166, 525
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	2 cut(s)	91, 273
NlaIV	GGNNCC	2 cut(s)	139, 453
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	3 cut(s)	130, 431, 584
NspI	RCATGY	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	2 cut(s)	455, 467
PdiI	GCCGGC	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	35, 468, 549
PleI	GAGTC	3 cut(s)	19, 295, 574
PpsI	GAGTC	3 cut(s)	19, 295, 574
Ppu21I	YACGTR	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	139, 453
PspPI	GGNCC	1 cut(s)	61
PsrI	GAACNNNNNNTAC	4 cut(s)	191, 223, 464, 496
RsaI	GTAC	3 cut(s)	25, 482, 632
RsaNI	GTAC	3 cut(s)	24, 481, 631
RseI	CAYNNNNRTG	1 cut(s)	395
SalI	GTCGAC	2 cut(s)	212, 460
SatI	GCNGC	3 cut(s)	34, 467, 548
Sau3AI	GATC	2 cut(s)	166, 525
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	3 cut(s)	20, 296, 575
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	1 cut(s)	534
SgrDI	CGTCGACG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	395
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	3 cut(s)	73, 204, 548
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	49, 364
TaiI	ACGT	4 cut(s)	184, 213, 486, 500
TaqI	TCGA	4 cut(s)	14, 81, 213, 461
TatI	WGTACW	2 cut(s)	23, 630
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	143
TscAI	CASTG	2 cut(s)	402, 432
TseFI	GTSAC	3 cut(s)	130, 431, 584
TseI	GCWGC	2 cut(s)	33, 466
Tsp45I	GTSAC	3 cut(s)	130, 431, 584
TspDTI	ATGAA	2 cut(s)	116, 383
TspGWI	ACGGA	2 cut(s)	519, 559
TspRI	CASTG	2 cut(s)	402, 432
VneI	GTGCAC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	222
XceI	RCATGY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmiI	GTMKAC	3 cut(s)	213, 246, 461
XmnI	GAANNNNTTC	1 cut(s)	374
ZraI	GACGTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.