Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002268.1

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Forward (+)

27588 .. 32696

Gene Structure 5109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgcatttacgaatgttggaactggcgagagacgcattgaattctgaaggcttttgtgtgattggaggttatatttcacctgttaatgatgcatacaacaaggggggacttatatctgctgaacatcgtatacagttgtgtcatctagcctgcaaaagttcagagtttgtaatggttgatccctgggaggcaagacaaagtaccttccaacgatgtttaacagtactgtctagaatcaagggtttcttgtctgagtctgggctgatacgaagtgaatccctgaagtgcgtgcttgtctgtggttctgatctactccactcttttagcattcctggagtttggattcgagaccaggtcaggagcatatgtagagattatggtgtggttagcattcgcagggagggacaagatgttgacaagataatgtcaaatgatgatattttgagggagaataggggtaacataagaattgtggatgagcttgtaccaaaccaaataagctcgacaagagtaagggattgcatctcaagagggttgtcgataaaatatctgactgcagatgaagtaattaattatattaaagagcagcacctctacttgaactcaaatgacaagctccggttcttactatcttttgcttcaggacttcctatttctgtacttcaaaaagctgctgctaagtccagggaattcaaagctgcatatgtcaattcactaattgtttcctttgaaacagagctccggttcttactatcttttgcttcaggacttcctatttctgtacttcaaaaagctgctgctaagtccagggaattcaaagctgcatatggtaaacacttgaagcattctgaagatagctttccctttcaaagtccagttgacaagatggttgagtgcatccaaaagtctaccacatcgtggcaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

309

Amino Acids

34.76

Weight (kDa)

8.8

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	2 - 172	6.5e-10	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	918
AccI	GTMKAC	2 cut(s)	130, 908
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	3 cut(s)	40, 689, 812
AcuI	CTGAAG	5 cut(s)	66, 302, 624, 747, 870
AdeI	CACNNNGTG	1 cut(s)	918
AfaI	GTAC	5 cut(s)	202, 225, 486, 660, 783
AfiI	CCNNNNNNNGG	1 cut(s)	918
AgsI	TTSAA	9 cut(s)	40, 601, 665, 694, 731, 788, 817, 841, 869
AjnI	CCWGG	5 cut(s)	182, 331, 351, 683, 806
AluBI	AGCT	9 cut(s)	481, 501, 616, 671, 698, 739, 794, 821, 858
AluI	AGCT	9 cut(s)	481, 501, 616, 671, 698, 739, 794, 821, 858
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	2 cut(s)	24, 342
AlwI	GGATC	1 cut(s)	173
ApeKI	GCWGC	7 cut(s)	586, 671, 674, 698, 794, 797, 821
ApoI	RAATTY	3 cut(s)	40, 689, 812
AseI	ATTAAT	1 cut(s)	570
AsuHPI	GGTGA	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	7 cut(s)	598, 658, 661, 685, 781, 784, 808
BccI	CCATC	1 cut(s)	880
BciT130I	CCWGG	5 cut(s)	184, 333, 353, 685, 808
BcoDI	GTCTC	2 cut(s)	24, 342
BfaI	CTAG	2 cut(s)	146, 231
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	7 cut(s)	587, 672, 675, 699, 795, 798, 822
BlsI	GCNGC	7 cut(s)	588, 673, 676, 700, 796, 799, 823
BmcAI	AGTACT	1 cut(s)	225
Bme1390I	CCNGG	5 cut(s)	184, 333, 353, 685, 808
BmrFI	CCNGG	5 cut(s)	184, 333, 353, 685, 808
BmsI	GCATC	3 cut(s)	79, 531, 906
BpmI	CTGGAG	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	342
BsaJI	CCNNGG	4 cut(s)	182, 183, 684, 807
BsaWI	WCCGGW	2 cut(s)	618, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
Bse1I	ACTGG	2 cut(s)	27, 875
BseBI	CCWGG	5 cut(s)	184, 333, 353, 685, 808
BseDI	CCNNGG	4 cut(s)	182, 183, 684, 807
BseGI	GGATG	2 cut(s)	481, 897
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	2 cut(s)	27, 875
BseXI	GCAGC	7 cut(s)	598, 658, 661, 685, 781, 784, 808
BsiHKAI	GWGCWC	1 cut(s)	741
BsiSI	CCGG	2 cut(s)	619, 742
BslFI	GGGAC	2 cut(s)	120, 417
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	2 cut(s)	24, 342
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	2 cut(s)	120, 417
BsmI	GAATGC	3 cut(s)	327, 390, 844
Bso31I	GGTCTC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	2 cut(s)	178, 307
BspCNI	CTCAG	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	27, 875
BssECI	CCNNGG	4 cut(s)	182, 183, 684, 807
BssMI	GATC	2 cut(s)	178, 307
BssNAI	GTATAC	1 cut(s)	131
Bst1107I	GTATAC	1 cut(s)	131
Bst2UI	CCWGG	5 cut(s)	184, 333, 353, 685, 808
Bst4CI	ACNGT	3 cut(s)	135, 223, 228
BstC8I	GCNNGC	2 cut(s)	151, 290
BstDEI	CTNAG	3 cut(s)	252, 678, 801
BstF5I	GGATG	2 cut(s)	481, 897
BstKTI	GATC	2 cut(s)	181, 310
BstMAI	GTCTC	2 cut(s)	24, 342
BstMBI	GATC	2 cut(s)	178, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	5 cut(s)	184, 333, 353, 685, 808
BstSCI	CCNGG	5 cut(s)	182, 331, 351, 683, 806
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	7 cut(s)	598, 658, 661, 685, 781, 784, 808
BstZ17I	GTATAC	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	481, 897
Cac8I	GCNNGC	2 cut(s)	151, 290
CseI	GACGC	1 cut(s)	41
CsiI	ACCWGGT	1 cut(s)	351
Csp6I	GTAC	5 cut(s)	201, 224, 485, 659, 782
CviQI	GTAC	5 cut(s)	201, 224, 485, 659, 782
DdeI	CTNAG	3 cut(s)	252, 678, 801
DpnI	GATC	2 cut(s)	180, 309
DpnII	GATC	2 cut(s)	178, 307
DraIII	CACNNNGTG	1 cut(s)	918
Ecl136II	GAGCTC	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	739
Eco57I	CTGAAG	5 cut(s)	66, 302, 624, 747, 870
EcoICRI	GAGCTC	1 cut(s)	739
EcoRI	GAATTC	3 cut(s)	40, 689, 812
EcoRII	CCWGG	5 cut(s)	182, 331, 351, 683, 806
EcoT22I	ATGCAT	2 cut(s)	6, 94
EcoT38I	GRGCYC	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	24
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	2 cut(s)	120, 417
FauNDI	CATATG	3 cut(s)	365, 703, 826
FblI	GTMKAC	2 cut(s)	130, 908
Fnu4HI	GCNGC	7 cut(s)	587, 672, 675, 699, 795, 798, 822
FokI	GGATG	2 cut(s)	488, 884
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	7 cut(s)	587, 672, 675, 699, 795, 798, 822
FspBI	CTAG	2 cut(s)	146, 231
GluI	GCNGC	7 cut(s)	587, 672, 675, 699, 795, 798, 822
GsuI	CTGGAG	1 cut(s)	354
HapII	CCGG	2 cut(s)	619, 742
HgaI	GACGC	1 cut(s)	41
HincII	GTYRAC	2 cut(s)	415, 880
HindII	GTYRAC	2 cut(s)	415, 880
HinfI	GANTC	4 cut(s)	234, 254, 275, 343
HpaII	CCGG	2 cut(s)	619, 742
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	5 cut(s)	131, 415, 833, 880, 909
Hpy188I	TCNGA	6 cut(s)	46, 163, 253, 307, 552, 850
Hpy188III	TCNNGA	6 cut(s)	231, 347, 358, 528, 642, 765
Hpy8I	GTNNAC	5 cut(s)	131, 415, 833, 880, 909
HpyAV	CCTTC	2 cut(s)	41, 214
HpyCH4III	ACNGT	3 cut(s)	135, 223, 228
HpyCH4V	TGCA	8 cut(s)	4, 92, 153, 522, 557, 701, 824, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	3 cut(s)	252, 678, 801
Kzo9I	GATC	2 cut(s)	178, 307
LmnI	GCTCC	3 cut(s)	360, 621, 744
Lsp1109I	GCAGC	7 cut(s)	598, 658, 661, 685, 781, 784, 808
LweI	GCATC	3 cut(s)	79, 531, 906
MabI	ACCWGGT	1 cut(s)	351
MaeI	CTAG	2 cut(s)	146, 231
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	2 cut(s)	180, 309
MboI	GATC	2 cut(s)	178, 307
MboII	GAAGA	1 cut(s)	863
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	8 cut(s)	40, 468, 567, 571, 689, 709, 717, 812
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	6 cut(s)	59, 181, 394, 438, 524, 602
Mph1103I	ATGCAT	2 cut(s)	6, 94
MseI	TTAA	4 cut(s)	84, 218, 570, 579
MspI	CCGG	2 cut(s)	619, 742
MspR9I	CCNGG	5 cut(s)	184, 333, 353, 685, 808
Mva1269I	GAATGC	3 cut(s)	327, 390, 844
MvaI	CCWGG	5 cut(s)	184, 333, 353, 685, 808
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeI	CATATG	3 cut(s)	365, 703, 826
NdeII	GATC	2 cut(s)	178, 307
NsiI	ATGCAT	2 cut(s)	6, 94
PasI	CCCWGGG	1 cut(s)	183
PctI	GAATGC	3 cut(s)	327, 390, 844
PfeI	GAWTC	3 cut(s)	234, 275, 343
PflFI	GACNNNGTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	918
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	7 cut(s)	588, 673, 676, 700, 796, 799, 823
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	741
Psp6I	CCWGG	5 cut(s)	182, 331, 351, 683, 806
PspGI	CCWGG	5 cut(s)	182, 331, 351, 683, 806
PsrI	GAACNNNNNNTAC	2 cut(s)	114, 146
PstI	CTGCAG	1 cut(s)	559
PsyI	GACNNNGTC	1 cut(s)	353
RsaI	GTAC	5 cut(s)	202, 225, 486, 660, 783
RsaNI	GTAC	5 cut(s)	201, 224, 485, 659, 782
SacI	GAGCTC	1 cut(s)	741
SaqAI	TTAA	4 cut(s)	84, 218, 570, 579
SatI	GCNGC	7 cut(s)	587, 672, 675, 699, 795, 798, 822
Sau3AI	GATC	2 cut(s)	178, 307
ScaI	AGTACT	1 cut(s)	225
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	5 cut(s)	184, 333, 353, 685, 808
SduI	GDGCHC	1 cut(s)	741
SexAI	ACCWGGT	1 cut(s)	351
SfaNI	GCATC	3 cut(s)	79, 531, 906
SfcI	CTRYAG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	8 cut(s)	40, 468, 567, 571, 689, 709, 717, 812
SspMI	CTAG	2 cut(s)	146, 231
SstI	GAGCTC	1 cut(s)	741
StyD4I	CCNGG	5 cut(s)	182, 331, 351, 683, 806
TaaI	ACNGT	3 cut(s)	135, 223, 228
TaqI	TCGA	3 cut(s)	346, 503, 539
TasI	AATT	8 cut(s)	40, 468, 567, 571, 689, 709, 717, 812
TatI	WGTACW	3 cut(s)	223, 658, 781
TfiI	GAWTC	3 cut(s)	234, 275, 343
Tru1I	TTAA	4 cut(s)	84, 218, 570, 579
Tru9I	TTAA	4 cut(s)	84, 218, 570, 579
TseI	GCWGC	7 cut(s)	586, 671, 674, 698, 794, 797, 821
TspDTI	ATGAA	1 cut(s)	576
Tth111I	GACNNNGTC	1 cut(s)	353
Van91I	CCANNNNNTGG	1 cut(s)	918
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	3 cut(s)	40, 689, 812
XbaI	TCTAGA	1 cut(s)	230
XmiI	GTMKAC	2 cut(s)	130, 908
XspI	CTAG	2 cut(s)	146, 231
ZrmI	AGTACT	1 cut(s)	225
Zsp2I	ATGCAT	2 cut(s)	6, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.