Rmu_sc0002308.1_g000015

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002308.1
OG0014879
Physical Location & Seq
Forward (+)
59837 .. 62374
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
atgagttatcgggatgtcattcgtgacatgtcggtttctcattggctcggggtcgcggcgctgtgggacccctctctcggacaatttcgaatgagcaaaagtttatttcatcaaattgcggaagccgtcaaagatcacgacaatttctttgtgcaacgtcgcaatggtattggtaacctcggattatcatctttgaaaaaatttacagctatttttcgaatgcttgcatatggtgtaccagctgatgctcttgatgaatatttaaaaattggtgagtctactgcaattcaatgtatgaaaaggttttgtcgagctgttatagaggtctttggaaaccgctatctaagaacacctaacgccaaggatgttgcgagacttttgtatataggtgaagaacggcgtagtagatcaccaactattatcctcgaggcagaagctgattatgatctttggatctggcatgcatattttggtttaccaggttccaacaatgccatcaatgtgcttgaagcatctcacctatttgcaaatcttgcggaagataaatctcatcccgttaattataagattgtagaaaaagattatgacaccggttattatttagccgatgatgaagacgaacaagagctgtttagtgatgaacttgcctcacctcatcggcctattggtgtaaagaaagcaaagctgaaaaggaaagagttgaatgagaagactaagattgttcaacaagtgaaagaatccaaccaagaactgaaggagttacttgaaaaaagcttgttggagagaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

263

Amino Acids

30.25

Weight (kDa)

6.41

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 134 - 204 4.7e-26 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AbsI CCTCGAGG 1 cut(s) 425
AccI GTMKAC 1 cut(s) 278
AccII CGCG 1 cut(s) 56
AciI CCGC 4 cut(s) 56, 119, 337, 536
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 27
AgeI ACCGGT 1 cut(s) 590
AgsI TTSAA 6 cut(s) 196, 290, 509, 703, 725, 767
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 7 cut(s) 209, 242, 314, 437, 628, 685, 774
AluI AGCT 7 cut(s) 209, 242, 314, 437, 628, 685, 774
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 1 cut(s) 461
AlwNI CAGNNNCTG 1 cut(s) 437
Ama87I CYCGRG 2 cut(s) 47, 425
AoxI GGCC 1 cut(s) 659
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AsiGI ACCGGT 1 cut(s) 590
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 5 cut(s) 284, 401, 402, 509, 642
AsuII TTCGAA 2 cut(s) 88, 217
AvaI CYCGRG 2 cut(s) 47, 425
AvaII GGWCC 1 cut(s) 67
BbsI GAAGAC 2 cut(s) 621, 716
BccI CCATC 1 cut(s) 503
BceAI ACGGC 2 cut(s) 110, 413
BciT130I CCWGG 1 cut(s) 480
BcoDI GTCTC 1 cut(s) 367
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 2 cut(s) 47, 425
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 3 cut(s) 68, 69, 484
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 2 cut(s) 235, 521
BpiI GAAGAC 2 cut(s) 621, 716
Bpu14I TTCGAA 2 cut(s) 88, 217
BsaBI GATNNNNATC 2 cut(s) 187, 444
BsaJI CCNNGG 2 cut(s) 178, 360
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 169
Bse8I GATNNNNATC 2 cut(s) 187, 444
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 178, 360
BseGI GGATG 3 cut(s) 19, 370, 550
BseJI GATNNNNATC 2 cut(s) 187, 444
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 661
BshTI ACCGGT 1 cut(s) 590
BsiHKCI CYCGRG 2 cut(s) 47, 425
BsiSI CCGG 1 cut(s) 591
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 1 cut(s) 661
BsoBI CYCGRG 2 cut(s) 47, 425
Bsp119I TTCGAA 2 cut(s) 88, 217
Bsp143I GATC 4 cut(s) 133, 407, 445, 453
BspACI CCGC 4 cut(s) 56, 119, 337, 536
BspANI GGCC 1 cut(s) 661
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 3 cut(s) 68, 69, 484
BspPI GGATC 1 cut(s) 461
BspT104I TTCGAA 2 cut(s) 88, 217
BsrDI GCAATG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 590
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 2 cut(s) 178, 360
BssMI GATC 4 cut(s) 133, 407, 445, 453
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 533
BstBI TTCGAA 2 cut(s) 88, 217
BstC8I GCNNGC 2 cut(s) 225, 462
BstDEI CTNAG 2 cut(s) 344, 714
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 3 cut(s) 19, 370, 550
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 4 cut(s) 136, 410, 448, 456
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 4 cut(s) 133, 407, 445, 453
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNI CCWGG 1 cut(s) 480
BstNSI RCATGY 2 cut(s) 31, 464
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 478
BstUI CGCG 1 cut(s) 56
BstV2I GAAGAC 2 cut(s) 621, 716
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
BsuRI GGCC 1 cut(s) 661
BtsCI GGATG 3 cut(s) 19, 370, 550
Cac8I GCNNGC 2 cut(s) 225, 462
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 1 cut(s) 67
CsiI ACCWGGT 1 cut(s) 478
Csp6I GTAC 1 cut(s) 236
CspAI ACCGGT 1 cut(s) 590
CviAII CATG 2 cut(s) 28, 461
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 2 cut(s) 344, 714
DpnI GATC 4 cut(s) 135, 409, 447, 455
DpnII GATC 4 cut(s) 133, 407, 445, 453
DraI TTTAAA 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 773
Eco88I CYCGRG 2 cut(s) 47, 425
Eco91I GGTNACC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 2 cut(s) 31, 464
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 27, 460
FauNDI CATATG 1 cut(s) 229
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 3 cut(s) 26, 377, 537
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 1 cut(s) 661
HapII CCGG 1 cut(s) 591
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 31, 464
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 772
HinfI GANTC 2 cut(s) 275, 737
HpaII CCGG 1 cut(s) 591
HphI GGTGA 5 cut(s) 284, 401, 402, 509, 642
Hpy166II GTNNAC 3 cut(s) 236, 279, 476
Hpy188I TCNGA 2 cut(s) 80, 182
Hpy188III TCNNGA 4 cut(s) 11, 23, 137, 251
Hpy8I GTNNAC 3 cut(s) 236, 279, 476
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 748
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 5 cut(s) 154, 227, 284, 464, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 2 cut(s) 344, 714
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 2 cut(s) 31, 464
HspAI GCGC 1 cut(s) 59
KflI GGGWCCC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 133, 407, 445, 453
LpnPI CCDG 5 cut(s) 252, 442, 465, 492, 604
LweI GCATC 2 cut(s) 235, 521
MabI ACCWGGT 1 cut(s) 478
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 3 cut(s) 23, 173, 759
MalI GATC 4 cut(s) 135, 409, 447, 455
MboI GATC 4 cut(s) 133, 407, 445, 453
MboII GAAGA 4 cut(s) 404, 551, 626, 721
MflI RGATCY 1 cut(s) 453
MluCI AATT 8 cut(s) 83, 114, 142, 200, 267, 285, 559, 787
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 3 cut(s) 510, 759, 765
MnlI CCTC 7 cut(s) 82, 188, 316, 421, 434, 658, 663
Mph1103I ATGCAT 1 cut(s) 466
MseI TTAA 3 cut(s) 263, 558, 790
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 591
MspR9I CCNGG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 225
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 533
NdeI CATATG 1 cut(s) 229
NdeII GATC 4 cut(s) 133, 407, 445, 453
NlaIII CATG 2 cut(s) 31, 464
NlaIV GGNNCC 3 cut(s) 68, 69, 484
NmuCI GTSAC 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 466
NspI RCATGY 2 cut(s) 31, 464
NspV TTCGAA 2 cut(s) 88, 217
PaeI GCATGC 1 cut(s) 464
PaeR7I CTCGAG 1 cut(s) 425
PciI ACATGT 1 cut(s) 27
PctI GAATGC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 737
PinAI ACCGGT 1 cut(s) 590
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 67
PscI ACATGT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 478
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 3 cut(s) 68, 69, 484
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
PspXI VCTCGAGB 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 1 cut(s) 453
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 3 cut(s) 263, 558, 790
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 4 cut(s) 133, 407, 445, 453
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 480
SexAI ACCWGGT 1 cut(s) 478
SfaNI GCATC 2 cut(s) 235, 521
Sfr274I CTCGAG 1 cut(s) 425
SfuI TTCGAA 2 cut(s) 88, 217
SinI GGWCC 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
SphI GCATGC 1 cut(s) 464
Sse9I AATT 8 cut(s) 83, 114, 142, 200, 267, 285, 559, 787
SsiI CCGC 4 cut(s) 56, 119, 337, 536
SspI AATATT 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 1 cut(s) 360
TaiI ACGT 1 cut(s) 160
TaqI TCGA 4 cut(s) 88, 217, 310, 426
TasI AATT 8 cut(s) 83, 114, 142, 200, 267, 285, 559, 787
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 3 cut(s) 263, 558, 790
Tru9I TTAA 3 cut(s) 263, 558, 790
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 5 cut(s) 98, 270, 311, 627, 654
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 200
XceI RCATGY 2 cut(s) 31, 464
XhoI CTCGAG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.