Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002389.1

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Forward (+)

84118 .. 84538

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgaagaagaagccgctgcagaagccaaaatggatggagtcgatccccgccggtgagaagtacatgcagattaagaagaagcttagggaattgaagctccacacagtctgcgaggaggccaagtgtcccaatctcggcgagtgctggtccgacggaggtttacggcggcgaaaccgccactgccaccaccactatcatgattcttggcaacaagtgtacgcgcggttgcaggtgaggttttgtaatgtgaagacttctaggactccgccgatgctggaccccaatgagccggcgaatgtggaggaggcgattgcgtcgtgggggttggattatgtggtgaatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

115

Amino Acids

13.54

Weight (kDa)

9.3

Isoelectric Point (pI)

63.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	3 - 42	9.2e-12	N-terminal domain of lipoyl synthase of Radical_SAM family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	220
AccII	CGCG	2 cut(s)	221, 223
AciI	CCGC	6 cut(s)	14, 48, 166, 175, 223, 266
AclWI	GGATC	1 cut(s)	37
AfaI	GTAC	2 cut(s)	62, 218
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	2 cut(s)	82, 97
AluI	AGCT	2 cut(s)	82, 97
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	147, 277
AsuHPI	GGTGA	2 cut(s)	65, 244
AvaII	GGWCC	2 cut(s)	147, 277
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	3 cut(s)	14, 17, 167
BlsI	GCNGC	3 cut(s)	15, 18, 168
Bme18I	GGWCC	2 cut(s)	147, 277
BmgT120I	GGNCC	2 cut(s)	147, 277
BmiI	GGNNCC	1 cut(s)	279
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	2 cut(s)	50, 289
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	128, 317
BseXI	GCAGC	1 cut(s)	3
Bsh1236I	CGCG	2 cut(s)	221, 223
BshFI	GGCC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	51, 290
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	6 cut(s)	14, 48, 166, 175, 223, 266
BspANI	GGCC	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	221, 223
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	37
BsrFI	RCCGGY	2 cut(s)	50, 289
BssAI	RCCGGY	2 cut(s)	50, 289
BssMI	GATC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	2 cut(s)	221, 223
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	2 cut(s)	221, 223
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	2 cut(s)	50, 289
Cfr13I	GGNCC	2 cut(s)	147, 277
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	61, 217
CviAII	CATG	2 cut(s)	64, 197
CviJI	RGCY	6 cut(s)	13, 25, 82, 97, 119, 289
CviKI_1	RGCY	6 cut(s)	13, 25, 82, 97, 119, 289
CviQI	GTAC	2 cut(s)	61, 217
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	147, 277
FaeI	CATG	2 cut(s)	67, 200
FaiI	YATR	3 cut(s)	65, 198, 333
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	2 cut(s)	63, 196
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	14, 17, 167
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	14, 17, 167
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	14, 17, 167
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	51, 290
HgaI	GACGC	1 cut(s)	303
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	67, 200
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	38, 200, 262
HpaII	CCGG	2 cut(s)	51, 290
HphI	GGTGA	2 cut(s)	65, 244
Hpy166II	GTNNAC	2 cut(s)	161, 217
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	161, 217
Hpy99I	CGWCG	2 cut(s)	155, 319
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	19, 67, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	67, 200
HspAI	GCGC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	5 cut(s)	64, 130, 215, 260, 303
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	258
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	4 cut(s)	16, 19, 88, 262
MluCI	AATT	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	47, 256
MmeI	TCCRAC	2 cut(s)	174, 306
MnlI	CCTC	6 cut(s)	106, 109, 149, 228, 295, 298
MroNI	GCCGGC	1 cut(s)	289
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	2 cut(s)	51, 290
MvnI	CGCG	2 cut(s)	221, 223
MwoI	GCNNNNNNNGC	1 cut(s)	22
NaeI	GCCGGC	1 cut(s)	291
NdeII	GATC	1 cut(s)	42
NgoMIV	GCCGGC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	67, 200
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	114
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	196
PaqCI	CACCTGC	1 cut(s)	220
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	15, 18, 168
PleI	GAGTC	2 cut(s)	46, 256
PpsI	GAGTC	2 cut(s)	46, 256
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	147, 277
PstI	CTGCAG	1 cut(s)	21
RsaI	GTAC	2 cut(s)	62, 218
RsaNI	GTAC	2 cut(s)	61, 217
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	14, 17, 167
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	2 cut(s)	147, 277
SchI	GAGTC	2 cut(s)	47, 256
SetI	ASST	5 cut(s)	84, 99, 160, 234, 239
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	17
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	147, 277
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	6 cut(s)	14, 48, 166, 175, 223, 266
SspMI	CTAG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	41
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	2 cut(s)	16, 169
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	147, 277
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.