Rmu_sc0002475.1_g000023

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002475.1
OG0014879
Physical Location & Seq
Reverse (-)
106012 .. 106608
597 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 597 bp
atgagcaaaagtttatttcatcaaattgcggaagccgtcaaagatcacaacaatttctttgtgcaacaacgcgatggaattggtaagctcggattatcatctttgcaaaaatttacagctgtttttcgaatgcttgcatatggtgtaccagctgatgctcttgatgaatatttaaaaattggtgagtctactgcaattcgatgtatgaaaaggttttgtcgagctgttatagaggtctttggaaaccgctatctaagaacacctaatgccgaggatgttgcgagacttttgtatataggtgaagaacgtgggttcccaggaatgttagggagcttagattgcatgcattggcgttggaaaaattgtcctacagcttgggcaggaatgtatgcagggcgtagtagatcaccaactattatcctcgaggcagtagctgattatgaactttggatctggcatgcacattttggtttaccaggctccaacaacaacatcaatgtgcttgaagcatctcacctatttgcaaatcttgcggaaggtaaatctcctcccgttaattataagattctagaaaaagattatgacaccggttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

198

Amino Acids

22.41

Weight (kDa)

7.7

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 83 - 198 7.9e-55 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
AbsI CCTCGAGG 1 cut(s) 422
AccI GTMKAC 1 cut(s) 188
AccII CGCG 1 cut(s) 72
AciI CCGC 3 cut(s) 29, 247, 533
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 1 cut(s) 147
AgeI ACCGGT 1 cut(s) 587
AgsI TTSAA 1 cut(s) 506
AjnI CCWGG 2 cut(s) 316, 475
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 7 cut(s) 88, 119, 152, 224, 333, 374, 434
AluI AGCT 7 cut(s) 88, 119, 152, 224, 333, 374, 434
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 458
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 422
ApoI RAATTY 1 cut(s) 110
AsiGI ACCGGT 1 cut(s) 587
AsuHPI GGTGA 4 cut(s) 194, 311, 399, 506
AsuII TTCGAA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 422
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 318, 477
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 1 cut(s) 369
Bme1390I CCNGG 2 cut(s) 318, 477
BmeT110I CYCGRG 1 cut(s) 422
BmiI GGNNCC 2 cut(s) 314, 481
BmrFI CCNGG 2 cut(s) 318, 477
BmsI GCATC 2 cut(s) 145, 518
Bpu14I TTCGAA 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 270, 316
BsaWI WCCGGW 1 cut(s) 587
Bse118I RCCGGY 1 cut(s) 587
Bse8I GATNNNNATC 1 cut(s) 97
BseBI CCWGG 2 cut(s) 318, 477
BseDI CCNNGG 2 cut(s) 270, 316
BseGI GGATG 1 cut(s) 280
BseJI GATNNNNATC 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 537
Bsh1236I CGCG 1 cut(s) 72
BshTI ACCGGT 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 588
BsmAI GTCTC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 127
Bsp143I GATC 3 cut(s) 43, 404, 450
BspACI CCGC 3 cut(s) 29, 247, 533
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 314, 481
BspPI GGATC 1 cut(s) 458
BspT104I TTCGAA 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 587
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 2 cut(s) 270, 316
BssMI GATC 3 cut(s) 43, 404, 450
Bst2UI CCWGG 2 cut(s) 318, 477
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 135, 344, 459
BstDEI CTNAG 2 cut(s) 254, 334
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 3 cut(s) 46, 407, 453
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 3 cut(s) 43, 404, 450
BstMWI GCNNNNNNNGC 2 cut(s) 339, 530
BstNI CCWGG 2 cut(s) 318, 477
BstNSI RCATGY 2 cut(s) 346, 461
BstSCI CCNGG 2 cut(s) 316, 475
BstSFI CTRYAG 1 cut(s) 369
BstUI CGCG 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 280
Cac8I GCNNGC 3 cut(s) 135, 344, 459
CaiI CAGNNNCTG 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 587
Csp6I GTAC 1 cut(s) 146
CspAI ACCGGT 1 cut(s) 587
CviAII CATG 2 cut(s) 343, 458
CviJI RGCY 9 cut(s) 35, 88, 119, 152, 224, 333, 374, 434, 480
CviKI_1 RGCY 9 cut(s) 35, 88, 119, 152, 224, 333, 374, 434, 480
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 2 cut(s) 254, 334
DpnI GATC 3 cut(s) 45, 406, 452
DpnII GATC 3 cut(s) 43, 404, 450
DraI TTTAAA 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 316, 475
EcoT22I ATGCAT 1 cut(s) 348
FaeI CATG 2 cut(s) 346, 461
FatI CATG 2 cut(s) 342, 457
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 188
FokI GGATG 1 cut(s) 287
FspBI CTAG 1 cut(s) 569
HapII CCGG 1 cut(s) 588
Hin1II CATG 2 cut(s) 346, 461
HinfI GANTC 2 cut(s) 185, 565
HpaII CCGG 1 cut(s) 588
HphI GGTGA 4 cut(s) 194, 311, 399, 506
Hpy166II GTNNAC 3 cut(s) 146, 189, 473
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 161, 569
Hpy8I GTNNAC 3 cut(s) 146, 189, 473
HpyAV CCTTC 1 cut(s) 530
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 9 cut(s) 64, 106, 137, 194, 342, 346, 392, 461, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 530
HpyF3I CTNAG 2 cut(s) 254, 334
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 2 cut(s) 346, 461
Kzo9I GATC 3 cut(s) 43, 404, 450
LmnI GCTCC 2 cut(s) 330, 485
LpnPI CCDG 8 cut(s) 162, 303, 330, 366, 378, 439, 462, 489
LweI GCATC 2 cut(s) 145, 518
MaeI CTAG 1 cut(s) 569
MaeII ACGT 1 cut(s) 307
MalI GATC 3 cut(s) 45, 406, 452
MboI GATC 3 cut(s) 43, 404, 450
MboII GAAGA 1 cut(s) 314
MflI RGATCY 1 cut(s) 450
MluCI AATT 8 cut(s) 24, 52, 78, 110, 177, 195, 361, 556
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 2 cut(s) 335, 507
MnlI CCTC 5 cut(s) 226, 265, 418, 431, 558
Mph1103I ATGCAT 1 cut(s) 348
MseI TTAA 3 cut(s) 173, 555, 595
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 2 cut(s) 119, 152
MspI CCGG 1 cut(s) 588
MspR9I CCNGG 2 cut(s) 318, 477
Mva1269I GAATGC 1 cut(s) 135
MvaI CCWGG 2 cut(s) 318, 477
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 339, 530
NdeI CATATG 1 cut(s) 139
NdeII GATC 3 cut(s) 43, 404, 450
NlaIII CATG 2 cut(s) 346, 461
NlaIV GGNNCC 2 cut(s) 314, 481
NmeAIII GCCGAG 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 2 cut(s) 346, 461
NspV TTCGAA 1 cut(s) 127
PaeI GCATGC 2 cut(s) 346, 461
PaeR7I CTCGAG 1 cut(s) 422
PctI GAATGC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 565
PinAI ACCGGT 1 cut(s) 587
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PsiI TTATAA 1 cut(s) 561
Psp6I CCWGG 2 cut(s) 316, 475
PspGI CCWGG 2 cut(s) 316, 475
PspN4I GGNNCC 2 cut(s) 314, 481
PspXI VCTCGAGB 1 cut(s) 422
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 450
PvuII CAGCTG 2 cut(s) 119, 152
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 3 cut(s) 173, 555, 595
Sau3AI GATC 3 cut(s) 43, 404, 450
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 318, 477
SfaNI GCATC 2 cut(s) 145, 518
SfcI CTRYAG 1 cut(s) 369
Sfr274I CTCGAG 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
SphI GCATGC 2 cut(s) 346, 461
Sse9I AATT 8 cut(s) 24, 52, 78, 110, 177, 195, 361, 556
SsiI CCGC 3 cut(s) 29, 247, 533
SspI AATATT 1 cut(s) 170
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 2 cut(s) 316, 475
TaiI ACGT 1 cut(s) 310
TaqI TCGA 4 cut(s) 127, 199, 220, 423
TasI AATT 8 cut(s) 24, 52, 78, 110, 177, 195, 361, 556
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 3 cut(s) 173, 555, 595
Tru9I TTAA 3 cut(s) 173, 555, 595
TspDTI ATGAA 4 cut(s) 8, 180, 221, 456
XapI RAATTY 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 568
XceI RCATGY 2 cut(s) 346, 461
XhoI CTCGAG 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 1 cut(s) 569
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.