Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002476.1

Orthogroup ID

OG0012696

Physical Location & Seq

Genomic Coordinates Reverse (-)

13705 .. 14959

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002476.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcatcaagagccgggttggatcgggaaactaccgctgctccgctgcactcgattctcactcaacgcagccatcaactcatcatgtccacattttatgacccagaggaagaagctaagatcttccttaggcttacgattctgagagagaacaaaaaggtcttgtttgccgaagcaaacaaagatttcgtcgacaacctgctcggattaatgattttccccgtctcttcaatgattccttttatcccagaagcttttgggagtctaactaatgtgaggaagagcatcgagaagatggcaaaatatcacaatccgatgaaggaattgcttctgaatactaagccaccagctcatcgaaattgtaaaaacaggggtgcacatataaatcatcgcctgagtcatagatttgttgaagatggcaaaatatcacaatccgatgaaggaattgcttgtgaactcgcccttttacgtggccgaagaccctacagttttgtgcctttcttgcaacaaatctatgactcaggctgcaaattattgtggcaccgcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

183

Amino Acids

21.03

Weight (kDa)

9.57

Isoelectric Point (pI)

61.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012696)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0247061
rosa_laevigata	RLG00000015225 RLG00000015226 RLG00000015501
rosa_multiflora	Rmu_sc0002476.1_g000006 Rmu_sc0004311.1_g000039 Rmu_sc0010547.1_g000014
rosa_roxburghii	Rroxscaffold_4G00291050 Rroxscaffold_7G00214380
rosa_rugosa	Rorug01G0322800
rosa_samantha	Rh1BG293200 Rh1DG325000 Rh4CG322800 Rh6BG031700 Rh6CG032500 Rh6CG032900 Rh6DG030300 Rh6DG030700
rosa_wichuraiana	Rw6G003170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	3 cut(s)	36, 44, 544
AclWI	GGATC	1 cut(s)	30
AcoI	YGGCCR	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	231, 413
AluBI	AGCT	3 cut(s)	116, 254, 350
AluI	AGCT	3 cut(s)	116, 254, 350
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	472
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	4 cut(s)	38, 46, 69, 525
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AseI	ATTAAT	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	327
AsuC2I	CCSGG	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	4 cut(s)	25, 33, 81, 512
BccI	CCATC	3 cut(s)	81, 289, 410
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	484
BfuAI	ACCTGC	1 cut(s)	207
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	4 cut(s)	39, 47, 70, 526
BlsI	GCNGC	4 cut(s)	40, 48, 71, 527
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	542
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	14, 294
BpiI	GAAGAC	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse21I	CCTNAGG	1 cut(s)	128
BseMII	CTCAG	3 cut(s)	134, 386, 534
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	4 cut(s)	25, 33, 81, 512
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	474
BshNI	GGYRCC	1 cut(s)	540
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	229
BsmBI	CGTCTC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	22, 120
BspACI	CCGC	3 cut(s)	36, 44, 544
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	3 cut(s)	135, 387, 533
BspLI	GGNNCC	1 cut(s)	542
BspMI	ACCTGC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	540
BssMI	GATC	2 cut(s)	22, 120
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	2 cut(s)	232, 275
BstBAI	YACGTR	1 cut(s)	470
BstDEI	CTNAG	6 cut(s)	117, 128, 143, 339, 395, 520
BstKTI	GATC	2 cut(s)	25, 123
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	22, 120
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 502
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	4 cut(s)	25, 33, 81, 512
BstV2I	GAAGAC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	474
BtgZI	GCGATG	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	207
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	9 cut(s)	14, 72, 116, 133, 254, 343, 350, 474, 525
CviKI_1	RGCY	9 cut(s)	14, 72, 116, 133, 254, 343, 350, 474, 525
DdeI	CTNAG	6 cut(s)	117, 128, 143, 339, 395, 520
DpnI	GATC	2 cut(s)	24, 122
DpnII	GATC	2 cut(s)	22, 120
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	232, 275
EarI	CTCTTC	2 cut(s)	232, 275
Eco81I	CCTNAGG	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	1 cut(s)	88
FaiI	YATR	6 cut(s)	86, 99, 381, 383, 402, 516
FatI	CATG	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	39, 47, 70, 526
Fsp4HI	GCNGC	4 cut(s)	39, 47, 70, 526
GluI	GCNGC	4 cut(s)	39, 47, 70, 526
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	6 cut(s)	55, 139, 235, 262, 397, 518
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	4 cut(s)	90, 193, 377, 455
Hpy188I	TCNGA	5 cut(s)	144, 206, 315, 333, 436
Hpy188III	TCNNGA	3 cut(s)	9, 26, 289
Hpy8I	GTNNAC	4 cut(s)	90, 193, 377, 455
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	313, 434
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	4 cut(s)	49, 377, 505, 528
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 502
HpyF3I	CTNAG	6 cut(s)	117, 128, 143, 339, 395, 520
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	22, 120
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	28, 117, 212, 261, 355, 360, 407, 507
Lsp1109I	GCAGC	4 cut(s)	25, 33, 81, 512
LweI	GCATC	2 cut(s)	14, 294
MaeII	ACGT	1 cut(s)	469
MalI	GATC	2 cut(s)	24, 122
MboI	GATC	2 cut(s)	22, 120
MboII	GAAGA	7 cut(s)	115, 122, 219, 292, 304, 425, 489
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	4 cut(s)	323, 358, 444, 530
MlyI	GAGTC	3 cut(s)	271, 406, 512
MnlI	CCTC	2 cut(s)	100, 270
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	1 cut(s)	209
MspA1I	CMGCKG	2 cut(s)	38, 46
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	11, 502
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	22, 120
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	55, 139, 235
PkrI	GCNGC	4 cut(s)	40, 48, 71, 527
PleI	GAGTC	3 cut(s)	270, 405, 512
PpsI	GAGTC	3 cut(s)	270, 405, 512
Ppu21I	YACGTR	1 cut(s)	470
PshBI	ATTAAT	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	4 cut(s)	39, 47, 70, 526
Sau3AI	GATC	2 cut(s)	22, 120
SchI	GAGTC	3 cut(s)	271, 406, 512
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	6 cut(s)	118, 162, 201, 256, 352, 472
SfaNI	GCATC	2 cut(s)	14, 294
SfcI	CTRYAG	1 cut(s)	484
Sse9I	AATT	4 cut(s)	323, 358, 444, 530
SsiI	CCGC	3 cut(s)	36, 44, 544
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	4 cut(s)	53, 192, 288, 355
TasI	AATT	4 cut(s)	323, 358, 444, 530
TfiI	GAWTC	3 cut(s)	55, 139, 235
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	4 cut(s)	38, 46, 69, 525
TspDTI	ATGAA	2 cut(s)	332, 453
VneI	GTGCAC	1 cut(s)	375
VspI	ATTAAT	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.