Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012696

Physical Location & Seq

Genomic Coordinates Reverse (-)

2926090 .. 2928261

Gene Structure 2172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG030300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCCACATTTTATGACCCAGAGGAAGAAGCTAAGATCTTCCTTACGCTTACGATTCTGAGAGAGAACAAAAAGGTCTTGTTTGCCGAAGCAAACAAAGATTTCGTCGACAACCTGCTCGGATTAATGACTTTCCCCGTCTCTTCAATGATTCCTTTTATCCCCGAAGCTTTTGGGAGTCTAACTAATGTGAGGAAGAGCATCGAGAAGATGGCAAAATATCACAATCCGATGAAGGAATTGCTTCTGAATACTAAGCCACCAGCTCATCGTTACTCTCATGAGAATGTCTTGTTTTCTCCAGAACATCAGCCCACTGAAAGTGAAAGTCAGCCTGTGGATCAGCCTACTGAAATTGAAAGTCAGCCTACGGGTCAGCGTACTGAAATTGGAAGTCAGATTGCTGATTTCTCATCGACAGTGAACTCGCCCTTTTACGTGTGTGAAGCTTGTGCTGAGACAGGAGATAAGCCTTTTTACGTGGCCGAAGACCCTACAGCTTTGTGCCTTTCTTGCAACAAACCTATGACTCAGGCTGCAAGTTATTGCGGCACCGCAACTGAAAGAGCAAATAAGGAAGGGGGTTTCGTCTTGTATGAGTCGAAATATATTATCACTGATGATTTACATGTGCACCCCCTGTTCACAGTTTCTCTCATGAAAAATATAGCTCCTGGATGGAATTCTCCAAATGCTGAAGAAATCACTGTGGATGTCTCTCACAAGAAACTGGTGATAATGGGACTGCTGAAAAGATCCATGCAAAGCAACACAGTGTTGTCGGATCTGTTCTTTTCCGATGGATTGCTTGAGAGGGTCACTCGTACCAATGGTGATCAGGGTGGTGATATGGGACTGAGCACTACTGAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

291

Amino Acids

32.38

Weight (kDa)

4.95

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	9 - 106	3.3e-09	Protein of unknown function (DUF674)
DUF674	PF05056	142 - 275	4.4e-11	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012696)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0247061
rosa_laevigata	RLG00000015225 RLG00000015226 RLG00000015501
rosa_multiflora	Rmu_sc0002476.1_g000006 Rmu_sc0004311.1_g000039 Rmu_sc0010547.1_g000014
rosa_roxburghii	Rroxscaffold_4G00291050 Rroxscaffold_7G00214380
rosa_rugosa	Rorug01G0322800
rosa_samantha	Rh1BG293200 Rh1DG325000 Rh4CG322800 Rh6BG031700 Rh6CG032500 Rh6CG032900 Rh6DG030300 Rh6DG030700
rosa_wichuraiana	Rw6G003170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	2 cut(s)	549, 555
AclWI	GGATC	3 cut(s)	348, 750, 792
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	682
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	2 cut(s)	382, 826
AflIII	ACRYGT	2 cut(s)	438, 628
AgsI	TTSAA	2 cut(s)	147, 359
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	6 cut(s)	32, 170, 266, 449, 500, 671
AluI	AGCT	6 cut(s)	32, 170, 266, 449, 500, 671
Alw21I	GWGCWC	2 cut(s)	636, 863
Alw26I	GTCTC	3 cut(s)	145, 452, 721
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	3 cut(s)	348, 750, 792
AoxI	GGCC	1 cut(s)	483
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	682
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AseI	ATTAAT	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	243
AsuHPI	GGTGA	3 cut(s)	745, 845, 857
BaeGI	GKGCMC	1 cut(s)	636
BanI	GGYRCC	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	2 cut(s)	636, 863
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	3 cut(s)	205, 672, 794
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	3 cut(s)	145, 452, 721
BfmI	CTRYAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	2 cut(s)	537, 550
BlsI	GCNGC	2 cut(s)	538, 551
Bme1390I	CCNGG	1 cut(s)	675
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	495
BplI	GAGNNNNNCTC	2 cut(s)	805, 837
BpmI	CTGGAG	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	830
BsaAI	YACGTR	2 cut(s)	439, 481
Bse1I	ACTGG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	675
BseGI	GGATG	2 cut(s)	683, 718
BseMII	CTCAG	5 cut(s)	50, 447, 545, 848, 858
BseNI	ACTGG	1 cut(s)	735
BseSI	GKGCMC	1 cut(s)	636
BseXI	GCAGC	1 cut(s)	523
BshFI	GGCC	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	551
BsiHKAI	GWGCWC	2 cut(s)	636, 863
BslFI	GGGAC	2 cut(s)	756, 867
BsmAI	GTCTC	3 cut(s)	145, 452, 721
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	2 cut(s)	756, 867
BsnI	GGCC	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	636, 863
Bsp143I	GATC	5 cut(s)	36, 340, 755, 784, 835
BspACI	CCGC	2 cut(s)	549, 555
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	5 cut(s)	51, 448, 544, 849, 859
BspHI	TCATGA	2 cut(s)	280, 657
BspLI	GGNNCC	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	3 cut(s)	348, 750, 792
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	735
BssMI	GATC	5 cut(s)	36, 340, 755, 784, 835
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	4 cut(s)	421, 649, 709, 775
Bst6I	CTCTTC	2 cut(s)	148, 191
BstBAI	YACGTR	2 cut(s)	439, 481
BstDEI	CTNAG	7 cut(s)	33, 59, 255, 456, 531, 857, 867
BstF5I	GGATG	2 cut(s)	683, 718
BstKTI	GATC	5 cut(s)	39, 343, 758, 787, 838
BstMAI	GTCTC	3 cut(s)	145, 452, 721
BstMBI	GATC	5 cut(s)	36, 340, 755, 784, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	636
BstV1I	GCAGC	1 cut(s)	523
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	3 cut(s)	36, 755, 784
BstYI	RGATCY	3 cut(s)	36, 755, 784
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	683, 718
BtsIMutI	CAGTG	5 cut(s)	315, 426, 615, 705, 780
BveI	ACCTGC	1 cut(s)	123
CciI	TCATGA	2 cut(s)	280, 657
Csp6I	GTAC	2 cut(s)	381, 825
CviAII	CATG	4 cut(s)	281, 629, 658, 760
CviQI	GTAC	2 cut(s)	381, 825
DdeI	CTNAG	7 cut(s)	33, 59, 255, 456, 531, 857, 867
DpnI	GATC	5 cut(s)	38, 342, 757, 786, 837
DpnII	GATC	5 cut(s)	36, 340, 755, 784, 835
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	2 cut(s)	148, 191
EarI	CTCTTC	2 cut(s)	148, 191
Eco57I	CTGAAG	1 cut(s)	717
EcoRI	GAATTC	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	673
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	4 cut(s)	284, 632, 661, 763
FaqI	GGGAC	2 cut(s)	756, 867
FatI	CATG	4 cut(s)	280, 628, 657, 759
FbaI	TGATCA	1 cut(s)	835
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	537, 550
FokI	GGATG	2 cut(s)	690, 725
Fsp4HI	GCNGC	2 cut(s)	537, 550
GluI	GCNGC	2 cut(s)	537, 550
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	485
Hin1II	CATG	4 cut(s)	284, 632, 661, 763
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	2 cut(s)	168, 447
HinfI	GANTC	5 cut(s)	55, 151, 178, 529, 599
HphI	GGTGA	3 cut(s)	745, 845, 857
Hpy166II	GTNNAC	5 cut(s)	6, 109, 424, 634, 645
Hpy188I	TCNGA	7 cut(s)	60, 122, 231, 249, 399, 784, 799
Hpy188III	TCNNGA	4 cut(s)	205, 281, 302, 658
Hpy8I	GTNNAC	5 cut(s)	6, 109, 424, 634, 645
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	229, 572
HpyCH4III	ACNGT	4 cut(s)	421, 649, 709, 775
HpyCH4IV	ACGT	2 cut(s)	438, 480
HpyCH4V	TGCA	4 cut(s)	516, 539, 634, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	7 cut(s)	33, 59, 255, 456, 531, 857, 867
HpySE526I	ACGT	2 cut(s)	438, 480
Hsp92II	CATG	4 cut(s)	284, 632, 661, 763
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	36, 340, 755, 784, 835
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	1 cut(s)	210
MaeII	ACGT	2 cut(s)	438, 480
MaeIII	GTNAC	2 cut(s)	272, 817
MalI	GATC	5 cut(s)	38, 342, 757, 786, 837
MboI	GATC	5 cut(s)	36, 340, 755, 784, 835
MboII	GAAGA	7 cut(s)	31, 38, 135, 208, 220, 500, 710
MflI	RGATCY	3 cut(s)	36, 755, 784
MhlI	GDGCHC	2 cut(s)	636, 863
MluCI	AATT	4 cut(s)	239, 354, 387, 682
MlyI	GAGTC	3 cut(s)	187, 523, 608
MmeI	TCCRAC	1 cut(s)	762
MnlI	CCTC	3 cut(s)	16, 186, 807
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	513
NdeII	GATC	5 cut(s)	36, 340, 755, 784, 835
NlaIII	CATG	4 cut(s)	284, 632, 661, 763
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	817
NspI	RCATGY	1 cut(s)	632
PagI	TCATGA	2 cut(s)	280, 657
PciI	ACATGT	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	55, 151
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	2 cut(s)	538, 551
PleI	GAGTC	3 cut(s)	186, 523, 607
PpsI	GAGTC	3 cut(s)	186, 523, 607
Ppu21I	YACGTR	2 cut(s)	439, 481
PscI	ACATGT	1 cut(s)	628
PshBI	ATTAAT	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	553
PsuI	RGATCY	3 cut(s)	36, 755, 784
RsaI	GTAC	2 cut(s)	382, 826
RsaNI	GTAC	2 cut(s)	381, 825
RseI	CAYNNNNRTG	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	537, 550
Sau3AI	GATC	5 cut(s)	36, 340, 755, 784, 835
SchI	GAGTC	3 cut(s)	187, 523, 608
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	2 cut(s)	636, 863
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	4 cut(s)	239, 354, 387, 682
SsiI	CCGC	2 cut(s)	549, 555
StyD4I	CCNGG	1 cut(s)	673
TaaI	ACNGT	4 cut(s)	421, 649, 709, 775
TaiI	ACGT	2 cut(s)	441, 483
TaqI	TCGA	4 cut(s)	108, 204, 416, 602
TasI	AATT	4 cut(s)	239, 354, 387, 682
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	2 cut(s)	55, 151
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	5 cut(s)	322, 426, 622, 712, 780
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	2 cut(s)	248, 674
TspRI	CASTG	5 cut(s)	322, 426, 622, 712, 780
VneI	GTGCAC	1 cut(s)	632
VspI	ATTAAT	1 cut(s)	125
XapI	RAATTY	1 cut(s)	682
XceI	RCATGY	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.