Rw6G003170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0012696
Physical Location & Seq
Reverse (-)
5090583 .. 5091055
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003170.1

Sequence Viewer

Length: 393 bp
ATGCTCTTCCTCACATTAGTTAGACTCCCAAAAGCTTCGGGGATAAAAGGAATCATTGAAGAGACGGGGAAAGTCATTAATCCGAGCAGGTTGTCGACGCCTTTCTTGCAACAAACCTATGACTCAGACTGCAAATTATTGTGGCACCGAGCTAATAAAGGAGATTTCGTCTTGTATGAATCCAAATATATTATCACCGATGATTTATATGTGCACCCCCTGTTTTCAGTTTCTCTCATGAAAAATATAGCTCCTGGATGCAATTCTCCAAATGCTGAAGAAATCACTGTGGATGTCTCTCATAAGAAACTGGTGATAATGGGACTGCTGAAAACATCCATGCAAAGCAACACAGTGTTGTCGGATCTGTTCTTTTCCGATGGATTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.53

Weight (kDa)

6.82

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 50 - 126 1.2e-06 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 95
AclWI GGATC 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 98
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 3 cut(s) 35, 152, 251
AluI AGCT 3 cut(s) 35, 152, 251
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 56, 301
Alw44I GTGCAC 1 cut(s) 212
AlwI GGATC 1 cut(s) 372
ApaLI GTGCAC 1 cut(s) 212
AseI ATTAAT 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 187, 325
BaeGI GKGCMC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 1 cut(s) 374
BcgI CGANNNNNNTGC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 56, 301
BfuAI ACCTGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bse1I ACTGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 255
BseGI GGATG 3 cut(s) 263, 298, 335
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 216
BslFI GGGAC 1 cut(s) 336
BsmAI GTCTC 2 cut(s) 56, 301
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 137
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 315
BssMI GATC 1 cut(s) 364
BssNI GRCGYC 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 289, 355
Bst6I CTCTTC 2 cut(s) 11, 54
BstACI GRCGYC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 3 cut(s) 263, 298, 335
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 2 cut(s) 56, 301
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BtsCI GGATG 3 cut(s) 263, 298, 335
BtsIMutI CAGTG 2 cut(s) 285, 360
BveI ACCTGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 237
CseI GACGC 1 cut(s) 106
CviAII CATG 2 cut(s) 238, 340
CviJI RGCY 3 cut(s) 35, 152, 251
CviKI_1 RGCY 3 cut(s) 35, 152, 251
DdeI CTNAG 1 cut(s) 124
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 11, 54
EarI CTCTTC 2 cut(s) 11, 54
Eco57I CTGAAG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 241, 343
FaiI YATR 9 cut(s) 120, 177, 189, 208, 210, 239, 248, 303, 341
FaqI GGGAC 1 cut(s) 336
FatI CATG 2 cut(s) 237, 339
FblI GTMKAC 1 cut(s) 95
FokI GGATG 3 cut(s) 270, 305, 322
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 2 cut(s) 241, 343
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 4 cut(s) 24, 51, 122, 179
HphI GGTGA 2 cut(s) 187, 325
Hpy166II GTNNAC 2 cut(s) 96, 214
Hpy188I TCNGA 4 cut(s) 84, 127, 364, 379
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 2 cut(s) 96, 214
Hpy99I CGWCG 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 289, 355
HpyCH4V TGCA 5 cut(s) 109, 132, 214, 261, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 2 cut(s) 241, 343
Kzo9I GATC 1 cut(s) 364
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 5 cut(s) 73, 233, 240, 267, 296
LweI GCATC 1 cut(s) 248
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 2 cut(s) 71, 290
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 2 cut(s) 134, 262
MlyI GAGTC 2 cut(s) 18, 116
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 1 cut(s) 20
MseI TTAA 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 1 cut(s) 364
NlaIII CATG 2 cut(s) 241, 343
NlaIV GGNNCC 1 cut(s) 146
PagI TCATGA 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 51, 179
PfoI TCCNGGA 1 cut(s) 253
PleI GAGTC 2 cut(s) 18, 116
PpsI GAGTC 2 cut(s) 18, 116
PshBI ATTAAT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 364
SalI GTCGAC 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 364
SchI GAGTC 2 cut(s) 18, 116
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 216
SetI ASST 5 cut(s) 37, 92, 119, 154, 253
SfaNI GCATC 1 cut(s) 248
Sse9I AATT 2 cut(s) 134, 262
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 289, 355
TaqI TCGA 1 cut(s) 95
TasI AATT 2 cut(s) 134, 262
TfiI GAWTC 2 cut(s) 51, 179
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 2 cut(s) 292, 360
TspDTI ATGAA 2 cut(s) 192, 254
TspRI CASTG 2 cut(s) 292, 360
VneI GTGCAC 1 cut(s) 212
VspI ATTAAT 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.