Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010547.1

Orthogroup ID

OG0012696

Physical Location & Seq

Genomic Coordinates Forward (+)

43429 .. 45698

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010547.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgcgaccgatatggagatcaccggtgttggagtcgtcaatggtcttggtgtaccagtcaaggccgtcggagcaaaactacttgctagaggttgtacgcggctatgtccgacccaaaagagatgaaatgataatggcactgcactcgattctcactcaacgcagccatcaactcatcatgtccacattttatgacccagaggaagaagctaagatcttccttaggcttacgattctgagagagaacaaaaaggtcttgtttgccgaagcaaacaaagatttcgtcgacaacctgctcggattaatgattttccccgtctcttcaatgattccttttatcccagaagcttttgggagtctaactaatgtgaggaagagcatcgagaagatggcaaaatatcacaatccgatgaaggaattgcttctgaatactaagccaccagctcatcgaaattgtaaaaacaggggtgcacatataaatcatcgcctgagtcatagatttgttgaagatggcaaaatatcacaatccgatgaaggaattgcttgtgaactcgcccttttacgtggccgaagaccctacagttttgtgcctttcttgcaacaaatctatgactcaggctgcaaattattgtggcaccgcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

214

Amino Acids

25.0

Weight (kDa)

9.65

Isoelectric Point (pI)

68.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012696)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0247061
rosa_laevigata	RLG00000015225 RLG00000015226 RLG00000015501
rosa_multiflora	Rmu_sc0002476.1_g000006 Rmu_sc0004311.1_g000039 Rmu_sc0010547.1_g000014
rosa_roxburghii	Rroxscaffold_4G00291050 Rroxscaffold_7G00214380
rosa_rugosa	Rorug01G0322800
rosa_samantha	Rh1BG293200 Rh1DG325000 Rh4CG322800 Rh6BG031700 Rh6CG032500 Rh6CG032900 Rh6DG030300 Rh6DG030700
rosa_wichuraiana	Rw6G003170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	99, 637
AcoI	YGGCCR	1 cut(s)	565
AfaI	GTAC	2 cut(s)	53, 96
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	324, 506
AluBI	AGCT	3 cut(s)	209, 347, 443
AluI	AGCT	3 cut(s)	209, 347, 443
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	1 cut(s)	322
Alw44I	GTGCAC	1 cut(s)	468
AoxI	GGCC	2 cut(s)	62, 565
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	162, 618
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AseI	ATTAAT	1 cut(s)	302
AsiGI	ACCGGT	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	420
AsuHPI	GGTGA	1 cut(s)	12
AxyI	CCTNAGG	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	633
BbsI	GAAGAC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	174, 605
BccI	CCATC	3 cut(s)	174, 382, 503
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	577
BfuAI	ACCTGC	1 cut(s)	300
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	3 cut(s)	100, 163, 619
BlsI	GCNGC	3 cut(s)	101, 164, 620
BmiI	GGNNCC	1 cut(s)	635
BmsI	GCATC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	577
BsaAI	YACGTR	1 cut(s)	563
BsaWI	WCCGGW	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	55
Bse21I	CCTNAGG	1 cut(s)	221
BseMII	CTCAG	3 cut(s)	227, 479, 627
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	2 cut(s)	174, 605
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	64, 567
BshNI	GGYRCC	1 cut(s)	633
BshTI	ACCGGT	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	322
BsmBI	CGTCTC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	64, 567
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	17, 213
BspACI	CCGC	2 cut(s)	99, 637
BspANI	GGCC	2 cut(s)	64, 567
BspCNI	CTCAG	3 cut(s)	228, 480, 626
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	635
BspMI	ACCTGC	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	633
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	2 cut(s)	17, 213
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	2 cut(s)	325, 368
BstBAI	YACGTR	1 cut(s)	563
BstDEI	CTNAG	6 cut(s)	210, 221, 236, 432, 488, 613
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	20, 216
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	2 cut(s)	17, 213
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 595
BstSFI	CTRYAG	1 cut(s)	577
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	174, 605
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	64, 567
BtgZI	GCGATG	1 cut(s)	467
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	52, 95
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	1 cut(s)	178
CviQI	GTAC	2 cut(s)	52, 95
DdeI	CTNAG	6 cut(s)	210, 221, 236, 432, 488, 613
DpnI	GATC	2 cut(s)	19, 215
DpnII	GATC	2 cut(s)	17, 213
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	2 cut(s)	325, 368
EarI	CTCTTC	2 cut(s)	325, 368
Eco81I	CCTNAGG	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	1 cut(s)	181
FaiI	YATR	8 cut(s)	13, 105, 179, 192, 474, 476, 495, 609
FatI	CATG	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	100, 163, 619
Fsp4HI	GCNGC	3 cut(s)	100, 163, 619
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	3 cut(s)	100, 163, 619
HaeIII	GGCC	2 cut(s)	64, 567
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	7 cut(s)	32, 148, 232, 328, 355, 490, 611
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	5 cut(s)	52, 183, 286, 470, 548
Hpy188I	TCNGA	7 cut(s)	70, 110, 237, 299, 408, 426, 529
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	5 cut(s)	52, 183, 286, 470, 548
Hpy99I	CGWCG	2 cut(s)	70, 287
HpyAV	CCTTC	2 cut(s)	406, 527
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	4 cut(s)	142, 470, 598, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 595
HpyF3I	CTNAG	6 cut(s)	210, 221, 236, 432, 488, 613
HpySE526I	ACGT	1 cut(s)	562
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	17, 213
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	9 cut(s)	36, 68, 210, 305, 354, 448, 453, 500, 600
Lsp1109I	GCAGC	2 cut(s)	174, 605
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	562
MalI	GATC	2 cut(s)	19, 215
MboI	GATC	2 cut(s)	17, 213
MboII	GAAGA	7 cut(s)	208, 215, 312, 385, 397, 518, 582
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	4 cut(s)	416, 451, 537, 623
MlyI	GAGTC	4 cut(s)	41, 364, 499, 605
MmeI	TCCRAC	3 cut(s)	9, 48, 133
MnlI	CCTC	3 cut(s)	82, 193, 363
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	1 cut(s)	302
MspI	CCGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	70, 595
NdeII	GATC	2 cut(s)	17, 213
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	635
PciSI	GCTCTTC	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	148, 232, 328
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	101, 164, 620
PleI	GAGTC	4 cut(s)	40, 363, 498, 605
PpsI	GAGTC	4 cut(s)	40, 363, 498, 605
Ppu21I	YACGTR	1 cut(s)	563
PshBI	ATTAAT	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	2 cut(s)	53, 96
RsaNI	GTAC	2 cut(s)	52, 95
SalI	GTCGAC	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	3 cut(s)	100, 163, 619
Sau3AI	GATC	2 cut(s)	17, 213
SchI	GAGTC	4 cut(s)	41, 364, 499, 605
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	7 cut(s)	93, 211, 255, 294, 349, 445, 565
SfaNI	GCATC	1 cut(s)	387
SfcI	CTRYAG	1 cut(s)	577
SgrAI	CRCCGGYG	1 cut(s)	22
Sse9I	AATT	4 cut(s)	416, 451, 537, 623
SsiI	CCGC	2 cut(s)	99, 637
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	4 cut(s)	146, 285, 381, 448
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	4 cut(s)	416, 451, 537, 623
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	3 cut(s)	148, 232, 328
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	2 cut(s)	162, 618
TspDTI	ATGAA	3 cut(s)	138, 425, 546
TspRI	CASTG	1 cut(s)	144
VneI	GTGCAC	1 cut(s)	468
VspI	ATTAAT	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.