Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004311.1

Orthogroup ID

OG0012696

Physical Location & Seq

Genomic Coordinates Reverse (-)

166581 .. 167278

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004311.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgtccacattcatagatgcacaaagagaaaccgacatcttcttgaagcttacaattggccgagagaacaggaaggtattgtttgcagaagcaaacaaggactttgttgacaatctggtgggattcatgacttttcctacctctgccatgattaagcttagccctgagccttttggcaagctaaacaatgttaaaaatagcattgagaacatgaccgagcattgcaatccgatgaaggcttctctcctgaatacaatgccaccggctcaccgcaatcggcacgagcatgctctgtgtccccttgatccctcatcacttgagaatatgcccttttatgtatgtgaagagtgtattactacccgagccaatgaagggagaggttttgttctacagcgagtgaaatacattattactgatgatttgaatgttcaccctcttctcacggcttctctcgtcagaaggataattcttggagctaattctcagcatgttgaagaggttaccgtgaacgtttcccataagaagctggccggtggtaagatatataacactattctgacatattttaagattatttcaactgagaattacttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

198

Amino Acids

22.49

Weight (kDa)

7.72

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012696)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0247061
rosa_laevigata	RLG00000015225 RLG00000015226 RLG00000015501
rosa_multiflora	Rmu_sc0002476.1_g000006 Rmu_sc0004311.1_g000039 Rmu_sc0010547.1_g000014
rosa_roxburghii	Rroxscaffold_4G00291050 Rroxscaffold_7G00214380
rosa_rugosa	Rorug01G0322800
rosa_samantha	Rh1BG293200 Rh1DG325000 Rh4CG322800 Rh6BG031700 Rh6CG032500 Rh6CG032900 Rh6DG030300 Rh6DG030700
rosa_wichuraiana	Rw6G003170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	271
AclI	AACGTT	1 cut(s)	510
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	2 cut(s)	58, 528
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	46, 424, 494, 579
AluBI	AGCT	5 cut(s)	49, 157, 181, 476, 526
AluI	AGCT	5 cut(s)	49, 157, 181, 476, 526
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	2 cut(s)	58, 528
AsuHPI	GGTGA	2 cut(s)	260, 422
AvaI	CYCGRG	1 cut(s)	360
BauI	CACGAG	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	389
BlpI	GCTNAGC	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	7
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse118I	RCCGGY	2 cut(s)	262, 530
Bse3DI	GCAATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	3 cut(s)	156, 497, 573
BshFI	GGCC	2 cut(s)	60, 530
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	263, 531
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	60, 530
BsoBI	CYCGRG	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	304
Bsp1720I	GCTNAGC	1 cut(s)	158
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	2 cut(s)	60, 530
BspCNI	CTCAG	3 cut(s)	157, 496, 574
BspHI	TCATGA	1 cut(s)	126
BspPI	GGATC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	2 cut(s)	262, 530
BssAI	RCCGGY	2 cut(s)	262, 530
BssMI	GATC	1 cut(s)	304
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	3 cut(s)	339, 441, 489
BstC8I	GCNNGC	3 cut(s)	179, 288, 528
BstDEI	CTNAG	4 cut(s)	158, 165, 483, 582
BstEII	GGTNACC	1 cut(s)	499
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstNSI	RCATGY	2 cut(s)	290, 491
BstPI	GGTNACC	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	60, 530
Cac8I	GCNNGC	3 cut(s)	179, 288, 528
CciI	TCATGA	1 cut(s)	126
Cfr10I	RCCGGY	2 cut(s)	262, 530
CviAII	CATG	5 cut(s)	127, 148, 211, 287, 488
DdeI	CTNAG	4 cut(s)	158, 165, 483, 582
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	2 cut(s)	58, 528
Eam1104I	CTCTTC	3 cut(s)	339, 441, 489
EarI	CTCTTC	3 cut(s)	339, 441, 489
Eco88I	CYCGRG	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	499
FaeI	CATG	5 cut(s)	130, 151, 214, 290, 491
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	5 cut(s)	126, 147, 210, 286, 487
HaeIII	GGCC	2 cut(s)	60, 530
HapII	CCGG	2 cut(s)	263, 531
Hin1II	CATG	5 cut(s)	130, 151, 214, 290, 491
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	2 cut(s)	47, 155
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	2 cut(s)	263, 531
HphI	GGTGA	2 cut(s)	260, 422
Hpy166II	GTNNAC	4 cut(s)	6, 109, 430, 508
Hpy188I	TCNGA	3 cut(s)	231, 458, 558
Hpy188III	TCNNGA	3 cut(s)	43, 127, 247
Hpy8I	GTNNAC	4 cut(s)	6, 109, 430, 508
HpyAV	CCTTC	4 cut(s)	67, 229, 365, 453
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	3 cut(s)	20, 86, 225
HpyF3I	CTNAG	4 cut(s)	158, 165, 483, 582
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	5 cut(s)	130, 151, 214, 290, 491
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	473
LpnPI	CCDG	7 cut(s)	55, 101, 177, 260, 276, 512, 544
LweI	GCATC	1 cut(s)	7
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	4 cut(s)	31, 356, 428, 506
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	4 cut(s)	54, 465, 478, 586
MnlI	CCTC	5 cut(s)	151, 319, 371, 444, 490
MseI	TTAA	3 cut(s)	153, 192, 567
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	2 cut(s)	263, 531
MunI	CAATTG	1 cut(s)	54
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	5 cut(s)	130, 151, 214, 290, 491
NmeAIII	GCCGAG	1 cut(s)	86
NspI	RCATGY	2 cut(s)	290, 491
PaeI	GCATGC	1 cut(s)	290
PagI	TCATGA	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	123
Psp1406I	AACGTT	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	153, 192, 567
Sau3AI	GATC	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	7
SfcI	CTRYAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	4 cut(s)	54, 465, 478, 586
SsiI	CCGC	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	513
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	4 cut(s)	54, 465, 478, 586
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	3 cut(s)	153, 192, 567
Tru9I	TTAA	3 cut(s)	153, 192, 567
TspDTI	ATGAA	3 cut(s)	115, 248, 384
XceI	RCATGY	2 cut(s)	290, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.