Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012696

Physical Location & Seq

Genomic Coordinates Forward (+)

44195134 .. 44195643

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0322800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAACAGAGTTTTGAACCGCAGCATTATGAGGTCCAGAAAGCTCTTCAGGTTCGTTTGAATGAATTATTGTCTGCTAATGAGATAGCTTCTAATAGAAGATGTCGAAACCGAGTTAAGGGTTTGGTAAACTCGGAAGAGCAGTGGACTACCAATCCGGAAGAAGTAAATGATCTTATTGTCAAGTACTATGAATCCATGTTCAGGGCAGGTAGTACTGATTCAGAAGCTTTGGAGATGGTTACTGCATGCTTGCAACCTAGGGTTTCCCCCACAATGAATGCTGACCTCAGTGCTCCTTATTCTGACGTGGAGATTAAGAAAGCTTTGTTCCAAATGCATCCTTCCAAATCTCCAGGGCCAAATGGGATGTCTCCTTGCTTCTTTCAGAGGTTTTGGAGTATTGTTGAACAGGACATCTGCATAGCTGTTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

145

Amino Acids

16.58

Weight (kDa)

5.72

Isoelectric Point (pI)

62.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012696)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0247061
rosa_laevigata	RLG00000015225 RLG00000015226 RLG00000015501
rosa_multiflora	Rmu_sc0002476.1_g000006 Rmu_sc0004311.1_g000039 Rmu_sc0010547.1_g000014
rosa_roxburghii	Rroxscaffold_4G00291050 Rroxscaffold_7G00214380
rosa_rugosa	Rorug01G0322800
rosa_samantha	Rh1BG293200 Rh1DG325000 Rh4CG322800 Rh6BG031700 Rh6CG032500 Rh6CG032900 Rh6DG030300 Rh6DG030700
rosa_wichuraiana	Rw6G003170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	2 cut(s)	188, 217
AfiI	CCNNNNNNNGG	2 cut(s)	118, 204
AgsI	TTSAA	3 cut(s)	17, 61, 410
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	5 cut(s)	44, 89, 230, 326, 428
AluI	AGCT	5 cut(s)	44, 89, 230, 326, 428
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	378
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	22
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspA2I	CCTAGG	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	34, 359
AvaII	GGWCC	1 cut(s)	34
AvrII	CCTAGG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	23
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	24
BmcAI	AGTACT	2 cut(s)	188, 217
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	34, 359
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	260, 356
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 204
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	260, 356
BseGI	GGATG	2 cut(s)	340, 375
BseLI	CCNNNNNNNGG	2 cut(s)	118, 204
BseMII	CTCAG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	118, 204
BsmAI	GTCTC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	200
BspQI	GCTCTTC	2 cut(s)	51, 132
BssECI	CCNNGG	2 cut(s)	260, 356
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	357
Bst6I	CTCTTC	2 cut(s)	51, 132
BstC8I	GCNNGC	2 cut(s)	250, 254
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	340, 375
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	361
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	340, 375
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	2 cut(s)	149, 298
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	250, 254
Cfr13I	GGNCC	2 cut(s)	34, 359
Csp6I	GTAC	2 cut(s)	187, 216
CviAII	CATG	2 cut(s)	199, 249
CviJI	RGCY	6 cut(s)	44, 89, 230, 326, 361, 428
CviKI_1	RGCY	6 cut(s)	44, 89, 230, 326, 361, 428
CviQI	GTAC	2 cut(s)	187, 216
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	51, 132
EarI	CTCTTC	2 cut(s)	51, 132
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	202, 252
FaiI	YATR	5 cut(s)	30, 192, 200, 250, 425
FatI	CATG	2 cut(s)	198, 248
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	2 cut(s)	327, 382
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	2 cut(s)	202, 252
HindIII	AAGCTT	2 cut(s)	228, 324
HinfI	GANTC	2 cut(s)	194, 221
HpaII	CCGG	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	130, 147
Hpy188I	TCNGA	4 cut(s)	136, 226, 307, 390
Hpy188III	TCNNGA	2 cut(s)	37, 158
Hpy8I	GTNNAC	2 cut(s)	130, 147
HpyAV	CCTTC	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	248, 256, 340, 423
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	202, 252
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	172
LguI	GCTCTTC	2 cut(s)	51, 132
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	8 cut(s)	35, 50, 171, 190, 195, 342, 369, 398
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	38, 111, 149, 173
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	1 cut(s)	65
MnlI	CCTC	3 cut(s)	25, 299, 384
Mph1103I	ATGCAT	1 cut(s)	342
MroI	TCCGGA	1 cut(s)	157
MseI	TTAA	2 cut(s)	117, 318
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	357
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	202, 252
NsiI	ATGCAT	1 cut(s)	342
NspI	RCATGY	1 cut(s)	252
PaeI	GCATGC	1 cut(s)	252
PciSI	GCTCTTC	2 cut(s)	51, 132
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	194, 221
PkrI	GCNGC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspPI	GGNCC	2 cut(s)	34, 359
RsaI	GTAC	2 cut(s)	188, 217
RsaNI	GTAC	2 cut(s)	187, 216
SapI	GCTCTTC	2 cut(s)	51, 132
SaqAI	TTAA	2 cut(s)	117, 318
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	34, 359
ScaI	AGTACT	2 cut(s)	188, 217
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	34
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	260
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	106
TasI	AATT	1 cut(s)	65
TatI	WGTACW	2 cut(s)	186, 215
TfiI	GAWTC	2 cut(s)	194, 221
Tru1I	TTAA	2 cut(s)	117, 318
Tru9I	TTAA	2 cut(s)	117, 318
TscAI	CASTG	2 cut(s)	149, 298
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	4 cut(s)	17, 78, 207, 293
TspRI	CASTG	2 cut(s)	149, 298
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	252
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	1 cut(s)	261
ZrmI	AGTACT	2 cut(s)	188, 217
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.