Rh1BG293200
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012696
Physical Location & Seq
Forward (+)
42895082 .. 42914570
19489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG293200.1

Sequence Viewer

Length: 1113 bp
ATGATTGAGAGACTCGTAAGATGCGAGGCTTCTGGTTATCAAAAGCTTTTGATGAAGAGGGTAGAGGAAAATCTGGATTCAATTACTAATTTAAAGGCCCGGTCAGTGCACAACTCTGTTATGGAGCTTCAAAATATATGCAATCATCCATATCTCAGCCAGCTTCATGTAGAGGAGGTTGATAACTTAATACCAAAGCACTATCTACCACCAATCATAAGGCTTTATGGGAAGCTTGAGATGTTAGATCGATTATTTCCCAAGCTAAAAGCAACAAACATACGGCTACTCGATGTCATGGAGGAATATCTCAGCTTTAAGCAGTATTGGTACCGTAGGTTGGATGGACATACATCTGGTGGTGATCATGGTTCCCTTATTGATATATTCAATAAACCAGATTCTCCTTTTTTTTCCTATTTCTTCTCAGGGTTGGAAGAGCACTCTTTTACTGGTTCAGTGAGACTGCTATTAAAGATCCATTCTCTAAGCCTCCGGTCATTTGACTCAATGGAGGTCTTTCAACATGTCTTTTGCTGGGTTAATTTGCAGTCCAACTTTTTCAGACATCAAGATGAACTCCCGTGGCAAAAACCACTGAGGAGGAGGCTGCTTTCTAACTGTGTCGTGGCTAATGAACTGGTTGTACAGTGCTGTAACACCTTGGCATATCACTTGCAGCTCAAAGCAGTATTCATCATGTCCACATTCATAGATGCACAAAGAGAAACCGACATCTTCTTGAAGCTTACAATTGACCGAGAGAACAGGAAGGTATTGTTTGCAGAAGCAAACAAGGACTTTGTTGACAATCTGGTGGGATTCATGACTTTTCCTACCTCTGCCATGATTAAGCTTAGCCCTGAGCCTTTTGGCAAGCTAAAAAATGTTAAAAATAGCATTGAGAACATGACCGAGTATTACAATCCGATGAAGGCTTCTCTCCTGAATACAATGCCACCGGCTCACCGCAATCCCTGTGTCCCCTTGATCCCTCATCACTTGAGAATATGCCCTTTTATGTATGTGAAGAGTGTATTACTACCCGAGGTAAGCCCTATTATGTGGCCAACGATCCCACAGTCTTGTGCCCTACTTGTAACCATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

370

Amino Acids

43.08

Weight (kDa)

8.48

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 243 - 305 4.8e-10 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 330
AciI CCGC 1 cut(s) 970
AclWI GGATC 3 cut(s) 472, 985, 1069
AcoI YGGCCR 1 cut(s) 1067
AfaI GTAC 2 cut(s) 332, 648
AfiI CCNNNNNNNGG 1 cut(s) 340
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 5 cut(s) 81, 131, 391, 524, 745
Alw21I GWGCWC 2 cut(s) 111, 444
Alw26I GTCTC 2 cut(s) 4, 457
Alw44I GTGCAC 1 cut(s) 107
AlwI GGATC 3 cut(s) 472, 985, 1069
Ama87I CYCGRG 1 cut(s) 1046
AoxI GGCC 2 cut(s) 96, 1067
ApaLI GTGCAC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 610, 679
Asp718I GGTACC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 374, 959
AvaI CYCGRG 1 cut(s) 1046
BaeGI GKGCMC 2 cut(s) 111, 1093
BalI TGGCCA 1 cut(s) 1069
BanI GGYRCC 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 111, 444
BbvI GCAGC 2 cut(s) 597, 691
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 299
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 4, 457
BisI GCNGC 2 cut(s) 611, 680
BlpI GCTNAGC 1 cut(s) 857
BlsI GCNGC 2 cut(s) 612, 681
Bme1390I CCNGG 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 1046
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 332, 373
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 2 cut(s) 11, 706
Bpu10I CCTNAGC 1 cut(s) 864
Bpu1102I GCTNAGC 1 cut(s) 857
BpuEI CTTGAG 2 cut(s) 257, 1024
BpuMI CCSGG 1 cut(s) 100
Bsa29I ATCGAT 1 cut(s) 250
BsaJI CCNNGG 3 cut(s) 584, 663, 1047
BsaWI WCCGGW 1 cut(s) 495
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 1 cut(s) 961
Bse1I ACTGG 2 cut(s) 457, 645
BseCI ATCGAT 1 cut(s) 250
BseDI CCNNGG 3 cut(s) 584, 663, 1047
BseGI GGATG 2 cut(s) 145, 349
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 5 cut(s) 169, 325, 441, 590, 855
BseNI ACTGG 2 cut(s) 457, 645
BseRI GAGGAG 3 cut(s) 188, 616, 619
BseSI GKGCMC 2 cut(s) 111, 1093
BseXI GCAGC 2 cut(s) 597, 691
BseYI CCCAGC 1 cut(s) 537
BshFI GGCC 2 cut(s) 98, 1069
BshNI GGYRCC 1 cut(s) 330
BshVI ATCGAT 1 cut(s) 250
BsiHKAI GWGCWC 2 cut(s) 111, 444
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 3 cut(s) 100, 496, 962
BslFI GGGAC 1 cut(s) 968
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 2 cut(s) 4, 457
BsmFI GGGAC 1 cut(s) 968
BsnI GGCC 2 cut(s) 98, 1069
BsoBI CYCGRG 1 cut(s) 1046
Bsp1286I GDGCHC 3 cut(s) 111, 444, 1093
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 5 cut(s) 247, 364, 477, 990, 1074
Bsp1720I GCTNAGC 1 cut(s) 857
BspACI CCGC 1 cut(s) 970
BspANI GGCC 2 cut(s) 98, 1069
BspCNI CTCAG 5 cut(s) 168, 324, 440, 591, 856
BspDI ATCGAT 1 cut(s) 250
BspHI TCATGA 1 cut(s) 825
BspLI GGNNCC 2 cut(s) 332, 373
BspPI GGATC 3 cut(s) 472, 985, 1069
BspQI GCTCTTC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 961
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 2 cut(s) 457, 645
BssAI RCCGGY 1 cut(s) 961
BssECI CCNNGG 3 cut(s) 584, 663, 1047
BssMI GATC 5 cut(s) 247, 364, 477, 990, 1074
BssT1I CCWWGG 1 cut(s) 663
Bst4CI ACNGT 4 cut(s) 335, 623, 651, 1083
Bst6I CTCTTC 3 cut(s) 50, 432, 1025
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 2 cut(s) 161, 878
BstDEI CTNAG 7 cut(s) 155, 311, 427, 488, 599, 857, 864
BstDSI CCRYGG 1 cut(s) 584
BstF5I GGATG 2 cut(s) 145, 349
BstKTI GATC 5 cut(s) 250, 367, 480, 993, 1077
BstMAI GTCTC 2 cut(s) 4, 457
BstMBI GATC 5 cut(s) 247, 364, 477, 990, 1074
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 98
BstSLI GKGCMC 2 cut(s) 111, 1093
BstV1I GCAGC 2 cut(s) 597, 691
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
Bsu15I ATCGAT 1 cut(s) 250
BsuRI GGCC 2 cut(s) 98, 1069
BsuTUI ATCGAT 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 584
BtsCI GGATG 2 cut(s) 145, 349
BtsIMutI CAGTG 4 cut(s) 111, 465, 596, 656
Cac8I GCNNGC 2 cut(s) 161, 878
CciI TCATGA 1 cut(s) 825
Cfr10I RCCGGY 1 cut(s) 961
Cfr13I GGNCC 1 cut(s) 97
ClaI ATCGAT 1 cut(s) 250
Csp6I GTAC 2 cut(s) 331, 647
CviQI GTAC 2 cut(s) 331, 647
DdeI CTNAG 7 cut(s) 155, 311, 427, 488, 599, 857, 864
DpnI GATC 5 cut(s) 249, 366, 479, 992, 1076
DpnII GATC 5 cut(s) 247, 364, 477, 990, 1074
DraI TTTAAA 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 1067
Eam1104I CTCTTC 3 cut(s) 50, 432, 1025
EarI CTCTTC 3 cut(s) 50, 432, 1025
Eco130I CCWWGG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 1046
EcoT14I CCWWGG 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 663
FaqI GGGAC 1 cut(s) 968
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 611, 680
FokI GGATG 2 cut(s) 132, 356
Fsp4HI GCNGC 2 cut(s) 611, 680
GluI GCNGC 2 cut(s) 611, 680
GsaI CCCAGC 1 cut(s) 541
HaeIII GGCC 2 cut(s) 98, 1069
HapII CCGG 3 cut(s) 100, 496, 962
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 4 cut(s) 44, 233, 746, 854
HinfI GANTC 5 cut(s) 12, 77, 401, 506, 822
HpaII CCGG 3 cut(s) 100, 496, 962
HphI GGTGA 2 cut(s) 374, 959
Hpy166II GTNNAC 3 cut(s) 109, 705, 808
Hpy188I TCNGA 2 cut(s) 566, 930
Hpy188III TCNNGA 5 cut(s) 74, 572, 742, 826, 946
Hpy8I GTNNAC 3 cut(s) 109, 705, 808
HpyAV CCTTC 2 cut(s) 766, 928
HpyCH4III ACNGT 4 cut(s) 335, 623, 651, 1083
HpyCH4V TGCA 6 cut(s) 109, 141, 550, 679, 719, 785
HpyF3I CTNAG 7 cut(s) 155, 311, 427, 488, 599, 857, 864
KpnI GGTACC 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 5 cut(s) 247, 364, 477, 990, 1074
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 2 cut(s) 597, 691
LweI GCATC 2 cut(s) 11, 706
MaeIII GTNAC 2 cut(s) 656, 1099
MalI GATC 5 cut(s) 249, 366, 479, 992, 1076
MboI GATC 5 cut(s) 247, 364, 477, 990, 1074
MboII GAAGA 5 cut(s) 67, 415, 449, 730, 1042
MfeI CAATTG 1 cut(s) 753
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 3 cut(s) 111, 444, 1093
MlsI TGGCCA 1 cut(s) 1069
MluCI AATT 4 cut(s) 81, 88, 544, 753
MluNI TGGCCA 1 cut(s) 1069
MlyI GAGTC 2 cut(s) 6, 500
MmeI TCCRAC 3 cut(s) 321, 414, 579
Mox20I TGGCCA 1 cut(s) 1069
MscI TGGCCA 1 cut(s) 1069
MseI TTAA 7 cut(s) 92, 188, 318, 473, 543, 852, 891
MslI CAYNNNNRTG 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 1069
MspI CCGG 3 cut(s) 100, 496, 962
MspR9I CCNGG 1 cut(s) 100
MunI CAATTG 1 cut(s) 753
NciI CCSGG 1 cut(s) 100
NdeII GATC 5 cut(s) 247, 364, 477, 990, 1074
NlaIV GGNNCC 2 cut(s) 332, 373
NspI RCATGY 1 cut(s) 530
PagI TCATGA 1 cut(s) 825
PciI ACATGT 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 432
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 3 cut(s) 77, 401, 822
PkrI GCNGC 2 cut(s) 612, 681
PleI GAGTC 2 cut(s) 6, 500
PpsI GAGTC 2 cut(s) 6, 500
PscI ACATGT 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 537
PspN4I GGNNCC 2 cut(s) 332, 373
PspPI GGNCC 1 cut(s) 97
PsrI GAACNNNNNNTAC 2 cut(s) 630, 662
PsuI RGATCY 1 cut(s) 477
RsaI GTAC 2 cut(s) 332, 648
RsaNI GTAC 2 cut(s) 331, 647
RseI CAYNNNNRTG 1 cut(s) 573
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 7 cut(s) 92, 188, 318, 473, 543, 852, 891
SatI GCNGC 2 cut(s) 611, 680
Sau3AI GATC 5 cut(s) 247, 364, 477, 990, 1074
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 2 cut(s) 6, 500
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 3 cut(s) 111, 444, 1093
SfaNI GCATC 2 cut(s) 11, 706
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 236, 1003
SmoI CTYRAG 2 cut(s) 236, 1003
Sse9I AATT 4 cut(s) 81, 88, 544, 753
SsiI CCGC 1 cut(s) 970
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 4 cut(s) 335, 623, 651, 1083
TaqI TCGA 2 cut(s) 250, 291
TaqII GACCGA 2 cut(s) 774, 929
TasI AATT 4 cut(s) 81, 88, 544, 753
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 3 cut(s) 77, 401, 822
Tru1I TTAA 7 cut(s) 92, 188, 318, 473, 543, 852, 891
Tru9I TTAA 7 cut(s) 92, 188, 318, 473, 543, 852, 891
TscAI CASTG 4 cut(s) 111, 465, 603, 656
TseI GCWGC 2 cut(s) 610, 679
TspDTI ATGAA 8 cut(s) 68, 155, 591, 651, 685, 700, 814, 947
TspRI CASTG 4 cut(s) 111, 465, 603, 656
VneI GTGCAC 1 cut(s) 107
XceI RCATGY 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.