Rmu_sc0002538.1_g000021

Bromodomain extra-terminal - transcription regulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002538.1
OG0006261
Physical Location & Seq
Forward (+)
79146 .. 82906
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1095 bp
ctgccggaatttctctttcaaattccgtctccggctgaccgcctcgccccagctcgccgccggtcacacacgtatgagttgctagggttcttgcatttgagctttcgatgccggaaaaggtgtgtgaccttagtggttacttggcagagaagaagatttgctgcagtagaagtgttgttctggcatagctgttacgtttgtgttgttatgtcagaagctgcaaaagatttggttggttcgagtaaacgccaaaaattaggaccagactactttggttactatacacatgaagtggtagagttgttgtcacaaaatgaagatgtttcacctttttcttccgaatcctcagatatatctcgaagcagatatgtggaggttaggggcaaggataggattgagcatagtaatggtgtgtatggttcgttgtttagtaacagcctagggaatgagctctcagatttcagaaaagaaagattgaagttgttgctcagacagggtgttaaagttcttgcaccagaagttgatgagatgatagaacctgttgtagctatgagccagttaaaatcacagctagagagcagaaagtgtttatcaagaggtgcagcaagtgatgttgatgcagggaaagcaccttctcctaagaaactaaagagatcttcatgctcttctagtagcctctctgcactttctagtcccaccaattccgaatcaaacagagaggtcgatgatgactggcagttccttatagagaacaacagcttgcaggttgaggagacagtaaaaaaatattgtgatcaatattatgcaaaactagggcacatggagcagcagcttgagaaaattcttgatactgtgatgtccaagtgcaggccaatgaccatccatgagaagcacaagcttggaaaacagattcagaagttaccaccagaaaaccttggccgtgttatggaaattatccagaatagcaacgcagcttatacgaattcctcggatgaagtttcggtggatcttgaaaaggagtctaatgttaccctttggagattgtttcattacgtagaagcagttgagaatgctagaaagctcgcaagtagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET GATA

Protein Analysis

364

Amino Acids

41.42

Weight (kDa)

8.33

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BET PF17035 291 - 353 3.9e-20 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 754
AciI CCGC 2 cut(s) 40, 58
AclWI GGATC 1 cut(s) 1014
AcoI YGGCCR 1 cut(s) 937
AcsI RAATTY 4 cut(s) 8, 21, 840, 982
AfiI CCNNNNNNNGG 2 cut(s) 867, 946
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 3 cut(s) 20, 478, 1013
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 2 cut(s) 33, 767
AlwI GGATC 1 cut(s) 1014
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 2 cut(s) 869, 937
ApeKI GCWGC 6 cut(s) 161, 218, 602, 826, 829, 971
ApoI RAATTY 4 cut(s) 8, 21, 840, 982
AspA2I CCTAGG 1 cut(s) 439
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 318
AvaII GGWCC 1 cut(s) 260
AvrII CCTAGG 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 819
BanII GRGCYC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 6 cut(s) 148, 205, 614, 838, 841, 983
BccI CCATC 1 cut(s) 887
BceAI ACGGC 1 cut(s) 924
BclI TGATCA 1 cut(s) 793
BcoDI GTCTC 2 cut(s) 33, 767
BfaI CTAG 7 cut(s) 83, 440, 572, 669, 690, 812, 1074
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 754
BglII AGATCT 1 cut(s) 653
BisI GCNGC 7 cut(s) 58, 162, 219, 603, 827, 830, 972
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 7 cut(s) 59, 163, 220, 604, 828, 831, 973
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmsI GCATC 2 cut(s) 98, 607
BpuEI CTTGAG 1 cut(s) 854
BsaAI YACGTR 2 cut(s) 72, 1054
BsaJI CCNNGG 3 cut(s) 439, 934, 987
Bsc4I CCNNNNNNNGG 2 cut(s) 867, 946
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 2 cut(s) 556, 737
BseDI CCNNGG 3 cut(s) 439, 934, 987
BseGI GGATG 2 cut(s) 879, 997
BseLI CCNNNNNNNGG 2 cut(s) 867, 946
BseMII CTCAG 3 cut(s) 360, 468, 502
BseNI ACTGG 2 cut(s) 556, 737
BseRI GAGGAG 1 cut(s) 785
BseSI GKGCMC 1 cut(s) 819
BseXI GCAGC 6 cut(s) 148, 205, 614, 838, 841, 983
BseYI CCCAGC 1 cut(s) 49
BsgI GTGCAG 3 cut(s) 621, 666, 886
BshFI GGCC 2 cut(s) 871, 939
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 4 cut(s) 5, 32, 61, 112
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 2 cut(s) 867, 946
BsmAI GTCTC 2 cut(s) 33, 767
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 678
BsmI GAATGC 1 cut(s) 1075
BsnI GGCC 2 cut(s) 871, 939
Bsp1286I GDGCHC 2 cut(s) 453, 819
Bsp143I GATC 3 cut(s) 653, 793, 1006
BspACI CCGC 2 cut(s) 40, 58
BspANI GGCC 2 cut(s) 871, 939
BspCNI CTCAG 3 cut(s) 359, 467, 501
BspMAI CTGCAG 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 754
BspPI GGATC 1 cut(s) 1014
BspQI GCTCTTC 1 cut(s) 670
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 2 cut(s) 556, 737
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 439, 934, 987
BssMI GATC 3 cut(s) 653, 793, 1006
BssT1I CCWWGG 2 cut(s) 439, 934
Bst4CI ACNGT 2 cut(s) 778, 853
Bst6I CTCTTC 1 cut(s) 670
BstBAI YACGTR 2 cut(s) 72, 1054
BstC8I GCNNGC 4 cut(s) 55, 761, 869, 1083
BstDEI CTNAG 5 cut(s) 130, 346, 454, 488, 639
BstF5I GGATG 2 cut(s) 879, 997
BstKTI GATC 3 cut(s) 656, 796, 1009
BstMAI GTCTC 2 cut(s) 33, 767
BstMBI GATC 3 cut(s) 653, 793, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 108, 626, 823
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 819
BstSNI TACGTA 1 cut(s) 1054
BstV1I GCAGC 6 cut(s) 148, 205, 614, 838, 841, 983
BstX2I RGATCY 2 cut(s) 653, 1006
BstYI RGATCY 2 cut(s) 653, 1006
BsuRI GGCC 2 cut(s) 871, 939
BtsCI GGATG 2 cut(s) 879, 997
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 4 cut(s) 55, 761, 869, 1083
CaiI CAGNNNCTG 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 260
CviAII CATG 4 cut(s) 287, 660, 820, 884
DdeI CTNAG 5 cut(s) 130, 346, 454, 488, 639
DpnI GATC 3 cut(s) 655, 795, 1008
DpnII GATC 3 cut(s) 653, 793, 1006
EaeI YGGCCR 1 cut(s) 937
Eam1104I CTCTTC 1 cut(s) 670
EarI CTCTTC 1 cut(s) 670
Ecl136II GAGCTC 1 cut(s) 451
Eco105I TACGTA 1 cut(s) 1054
Eco130I CCWWGG 2 cut(s) 439, 934
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 982
EcoT14I CCWWGG 2 cut(s) 439, 934
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 2 cut(s) 439, 934
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 4 cut(s) 290, 663, 823, 887
FaqI GGGAC 1 cut(s) 678
FatI CATG 4 cut(s) 286, 659, 819, 883
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 7 cut(s) 58, 162, 219, 603, 827, 830, 972
FokI GGATG 2 cut(s) 866, 1004
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 7 cut(s) 58, 162, 219, 603, 827, 830, 972
FspBI CTAG 7 cut(s) 83, 440, 572, 669, 690, 812, 1074
GluI GCNGC 7 cut(s) 58, 162, 219, 603, 827, 830, 972
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 871, 939
HapII CCGG 4 cut(s) 5, 32, 61, 112
Hin1II CATG 4 cut(s) 290, 663, 823, 887
HindIII AAGCTT 1 cut(s) 896
HinfI GANTC 4 cut(s) 341, 707, 910, 1019
HpaII CCGG 4 cut(s) 5, 32, 61, 112
HphI GGTGA 1 cut(s) 318
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 9 cut(s) 214, 340, 349, 457, 464, 491, 706, 915, 991
Hpy188III TCNNGA 5 cut(s) 357, 594, 845, 958, 1010
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 642
HpyCH4III ACNGT 2 cut(s) 778, 853
HpyCH4IV ACGT 3 cut(s) 71, 195, 1053
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 626, 823
HpyF3I CTNAG 5 cut(s) 130, 346, 454, 488, 639
HpySE526I ACGT 3 cut(s) 71, 195, 1053
Hsp92II CATG 4 cut(s) 290, 663, 823, 887
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 3 cut(s) 653, 793, 1006
LguI GCTCTTC 1 cut(s) 670
LmnI GCTCC 1 cut(s) 823
Lsp1109I GCAGC 6 cut(s) 148, 205, 614, 838, 841, 983
LweI GCATC 2 cut(s) 98, 607
MaeI CTAG 7 cut(s) 83, 440, 572, 669, 690, 812, 1074
MaeII ACGT 3 cut(s) 71, 195, 1053
MaeIII GTNAC 9 cut(s) 63, 124, 136, 191, 275, 306, 431, 918, 1027
MalI GATC 3 cut(s) 655, 795, 1008
MboI GATC 3 cut(s) 653, 793, 1006
MboII GAAGA 6 cut(s) 162, 165, 327, 329, 648, 657
MflI RGATCY 2 cut(s) 653, 1006
MhlI GDGCHC 2 cut(s) 453, 819
MluCI AATT 7 cut(s) 8, 21, 254, 700, 840, 951, 982
MlyI GAGTC 1 cut(s) 1028
MnlI CCTC 8 cut(s) 53, 355, 367, 590, 686, 712, 763, 997
MseI TTAA 2 cut(s) 501, 560
MslI CAYNNNNRTG 2 cut(s) 72, 405
MspI CCGG 4 cut(s) 5, 32, 61, 112
Mva1269I GAATGC 1 cut(s) 1075
MwoI GCNNNNNNNGC 3 cut(s) 108, 626, 823
NdeII GATC 3 cut(s) 653, 793, 1006
NlaIII CATG 4 cut(s) 290, 663, 823, 887
NmuCI GTSAC 3 cut(s) 63, 124, 306
PciSI GCTCTTC 1 cut(s) 670
PctI GAATGC 1 cut(s) 1075
PfeI GAWTC 3 cut(s) 341, 707, 910
PkrI GCNGC 7 cut(s) 59, 163, 220, 604, 828, 831, 973
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
Ppu21I YACGTR 2 cut(s) 72, 1054
Psp124BI GAGCTC 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 2 cut(s) 653, 1006
RseI CAYNNNNRTG 2 cut(s) 72, 405
SacI GAGCTC 1 cut(s) 453
SapI GCTCTTC 1 cut(s) 670
SaqAI TTAA 2 cut(s) 501, 560
SatI GCNGC 7 cut(s) 58, 162, 219, 603, 827, 830, 972
Sau3AI GATC 3 cut(s) 653, 793, 1006
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 1028
SduI GDGCHC 2 cut(s) 453, 819
SfaNI GCATC 2 cut(s) 98, 607
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 72, 405
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
SnaBI TACGTA 1 cut(s) 1054
Sse9I AATT 7 cut(s) 8, 21, 254, 700, 840, 951, 982
SsiI CCGC 2 cut(s) 40, 58
SspI AATATT 2 cut(s) 788, 800
SspMI CTAG 7 cut(s) 83, 440, 572, 669, 690, 812, 1074
SstI GAGCTC 1 cut(s) 453
StyI CCWWGG 2 cut(s) 439, 934
TaaI ACNGT 2 cut(s) 778, 853
TaiI ACGT 3 cut(s) 74, 198, 1056
TaqI TCGA 4 cut(s) 106, 239, 358, 723
TasI AATT 7 cut(s) 8, 21, 254, 700, 840, 951, 982
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 3 cut(s) 341, 707, 910
Tru1I TTAA 2 cut(s) 501, 560
Tru9I TTAA 2 cut(s) 501, 560
TseFI GTSAC 3 cut(s) 63, 124, 306
TseI GCWGC 6 cut(s) 161, 218, 602, 826, 829, 971
Tsp45I GTSAC 3 cut(s) 63, 124, 306
TspDTI ATGAA 5 cut(s) 303, 330, 648, 1008, 1037
TspGWI ACGGA 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 4 cut(s) 8, 21, 840, 982
XmaJI CCTAGG 1 cut(s) 439
XspI CTAG 7 cut(s) 83, 440, 572, 669, 690, 812, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.