Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002571.1

Orthogroup ID

OG0012561

Physical Location & Seq

Genomic Coordinates Reverse (-)

60813 .. 62423

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgcattgtgctaggcctatgttgctgcaacacgtgtcttgcatgtcagcttccagctatatatgctgtcgctcaaactgttatcgtcttcaaggcacccaccaatttcatagtgagttcactcaattttcatcccaaccaagctacccaccaccaccaccaccaccaccatccgaaacaatcatcaatgggtatgtttttcctcaccagtttccacatctttctgcaaatcgcactcagttgagcgctaattcatttccgcccccgcctcctccttctgcccaccatattatcattttcagcagcctacaccacctatacctccaggccactatcaaccacctccgcctcttgttccgaactgccaatactttgttttgcacctgcaatagccactatattagcaccaacctccggtcatattcagacaccccacaacgcctctctcacctctaccttcttatcattgttttcagcgatgatagagactgtactcctgcaatcaacaagctcaaaccgattcggtccgcggaacccgatgctttcgttgagacatctcttactgccattcccgtgataatagttgcagttgtgattgaatgccaaaaccagaaatcaacatcaaagcaccttaagcagaaaacccatctgggtaatcatgtagacatgctcaaactcaactctaaactgaagcagtttctcaaaatttgtaacgttaaagactcccggaagatgttcgataaaaggcctaagagagatgcagtttcatggaccgggtacttggcgaaatcgggtattgtgaactctgtcattgtgggaagtgctcttcttgacttgtatatgaaggttgttgggattgagaatggttgtatagttttcgataaaatgctgctaagaaatgtggtgtctgggactaccattatcactggtgaaattggtgagcaagttcaaattgttggtgataatctccttgttacaaacccaaagcgaggggagaaagcaatcaaagagaagagttgtaatgcccttcttttcaaggtgaatcaaattggttcagtaaccaaaagtgttgaagtgtcaaaacgtgatggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

364

Amino Acids

40.65

Weight (kDa)

9.38

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Enolase_C	PF00113	274 - 360	1.3e-17	Enolase, C-terminal TIM barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12840
malus_domestica	MD15G1256900.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871
rosa_multiflora	Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313860
rosa_rugosa	Rorug02G0091200
rosa_samantha	Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	1 cut(s)	530
AciI	CCGC	5 cut(s)	260, 266, 346, 528, 530
AclI	AACGTT	1 cut(s)	714
AcsI	RAATTY	1 cut(s)	705
AcuI	CTGAAG	1 cut(s)	710
AcvI	CACGTG	1 cut(s)	34
AfaI	GTAC	2 cut(s)	493, 779
AfeI	AGCGCT	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	414, 989
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	2 cut(s)	31, 33
AgsI	TTSAA	5 cut(s)	92, 599, 950, 1036, 1073
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	4 cut(s)	50, 57, 144, 511
AluI	AGCT	4 cut(s)	50, 57, 144, 511
Alw21I	GWGCWC	1 cut(s)	826
Alw26I	GTCTC	2 cut(s)	480, 545
Aor51HI	AGCGCT	1 cut(s)	247
AoxI	GGCC	3 cut(s)	14, 327, 746
ApeKI	GCWGC	3 cut(s)	25, 303, 889
ApoI	RAATTY	1 cut(s)	705
Asp700I	GAANNNNTTC	1 cut(s)	734
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	525, 771
AsuC2I	CCSGG	2 cut(s)	727, 775
AsuHPI	GGTGA	6 cut(s)	197, 440, 941, 950, 971, 1051
AvaII	GGWCC	2 cut(s)	525, 771
BanI	GGYRCC	1 cut(s)	95
BbrPI	CACGTG	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	826
BbvI	GCAGC	3 cut(s)	12, 315, 876
BccI	CCATC	3 cut(s)	178, 654, 1082
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	2 cut(s)	727, 775
BcoDI	GTCTC	2 cut(s)	480, 545
BfaI	CTAG	2 cut(s)	12, 1093
BfoI	RGCGCY	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	392
BisI	GCNGC	3 cut(s)	26, 304, 890
BlsI	GCNGC	3 cut(s)	27, 305, 891
Bme1390I	CCNGG	3 cut(s)	326, 727, 775
Bme18I	GGWCC	2 cut(s)	525, 771
BmgT120I	GGNCC	2 cut(s)	525, 771
BmiI	GGNNCC	2 cut(s)	97, 534
BmrFI	CCNGG	3 cut(s)	326, 727, 775
BmsI	GCATC	2 cut(s)	529, 748
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	727, 775
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 989
Bse1I	ACTGG	2 cut(s)	208, 931
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	131, 170
BseLI	CCNNNNNNNGG	2 cut(s)	414, 989
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	208, 931
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	12, 315, 876
Bsh1236I	CGCG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	16, 329, 748
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	826
BsiSI	CCGG	3 cut(s)	415, 727, 774
BslFI	GGGAC	1 cut(s)	925
BslI	CCNNNNNNNGG	2 cut(s)	414, 989
BsmAI	GTCTC	2 cut(s)	480, 545
BsmFI	GGGAC	1 cut(s)	925
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	3 cut(s)	16, 329, 748
Bsp1286I	GDGCHC	1 cut(s)	826
BspACI	CCGC	5 cut(s)	260, 266, 346, 528, 530
BspANI	GGCC	3 cut(s)	16, 329, 748
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	2 cut(s)	97, 534
BspMI	ACCTGC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	831
BspT107I	GGYRCC	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	208, 931
BssECI	CCNNGG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	80, 491
Bst6I	CTCTTC	2 cut(s)	831, 1007
BstAFI	CTTAAG	1 cut(s)	632
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	3 cut(s)	237, 750, 893
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	131, 170
BstFNI	CGCG	1 cut(s)	530
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstMAI	GTCTC	2 cut(s)	480, 545
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 63, 634
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	2 cut(s)	46, 670
BstSCI	CCNGG	3 cut(s)	324, 725, 773
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	3 cut(s)	12, 315, 876
BstV2I	GAAGAC	1 cut(s)	80
BsuRI	GGCC	3 cut(s)	16, 329, 748
BtgI	CCRYGG	1 cut(s)	528
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	131, 170
BtsIMutI	CAGTG	1 cut(s)	924
BveI	ACCTGC	1 cut(s)	392
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	525, 771
Cfr42I	CCGCGG	1 cut(s)	531
CpoI	CGGWCCG	1 cut(s)	525
Csp6I	GTAC	2 cut(s)	492, 778
CspI	CGGWCCG	1 cut(s)	525
CviAII	CATG	4 cut(s)	43, 659, 667, 768
CviQI	GTAC	2 cut(s)	492, 778
DdeI	CTNAG	3 cut(s)	237, 750, 893
Eam1104I	CTCTTC	2 cut(s)	831, 1007
EarI	CTCTTC	2 cut(s)	831, 1007
EciI	GGCGGA	2 cut(s)	249, 335
Eco147I	AGGCCT	2 cut(s)	16, 748
Eco47I	GGWCC	2 cut(s)	525, 771
Eco47III	AGCGCT	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	710
Eco72I	CACGTG	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	324
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	46, 662, 670, 771
FaqI	GGGAC	1 cut(s)	925
FatI	CATG	4 cut(s)	42, 658, 666, 767
FauI	CCCGC	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	3 cut(s)	26, 304, 890
FokI	GGATG	2 cut(s)	118, 157
Fsp4HI	GCNGC	3 cut(s)	26, 304, 890
FspBI	CTAG	2 cut(s)	12, 1093
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	3 cut(s)	26, 304, 890
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	16, 329, 748
HapII	CCGG	3 cut(s)	415, 727, 774
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	46, 662, 670, 771
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	520, 722, 1042
HpaII	CCGG	3 cut(s)	415, 727, 774
HphI	GGTGA	6 cut(s)	197, 440, 941, 950, 971, 1051
Hpy166II	GTNNAC	3 cut(s)	120, 664, 802
Hpy188I	TCNGA	3 cut(s)	175, 359, 427
Hpy188III	TCNNGA	1 cut(s)	830
Hpy8I	GTNNAC	3 cut(s)	120, 664, 802
HpyAV	CCTTC	4 cut(s)	285, 467, 838, 1037
HpyCH4III	ACNGT	2 cut(s)	80, 491
HpyCH4IV	ACGT	3 cut(s)	33, 714, 1084
HpyCH4V	TGCA	9 cut(s)	4, 28, 42, 227, 381, 387, 500, 587, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 63, 634
HpyF3I	CTNAG	3 cut(s)	237, 750, 893
HpySE526I	ACGT	3 cut(s)	33, 714, 1084
Hsp92II	CATG	4 cut(s)	46, 662, 670, 771
HspAI	GCGC	1 cut(s)	246
KspI	CCGCGG	1 cut(s)	531
LguI	GCTCTTC	1 cut(s)	831
Lsp1109I	GCAGC	3 cut(s)	12, 315, 876
LweI	GCATC	2 cut(s)	529, 748
MaeI	CTAG	2 cut(s)	12, 1093
MaeII	ACGT	3 cut(s)	33, 714, 1084
MaeIII	GTNAC	3 cut(s)	710, 973, 1057
MboII	GAAGA	4 cut(s)	80, 742, 818, 1024
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	7 cut(s)	104, 125, 250, 705, 933, 951, 1047
MlyI	GAGTC	1 cut(s)	716
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	734
MseI	TTAA	2 cut(s)	633, 717
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	3 cut(s)	415, 727, 774
MspR9I	CCNGG	3 cut(s)	326, 727, 775
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	3 cut(s)	22, 63, 634
NciI	CCSGG	2 cut(s)	727, 775
NlaIII	CATG	4 cut(s)	46, 662, 670, 771
NlaIV	GGNNCC	2 cut(s)	97, 534
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	46, 670
PaqCI	CACCTGC	1 cut(s)	392
PceI	AGGCCT	2 cut(s)	16, 748
PciSI	GCTCTTC	1 cut(s)	831
PctI	GAATGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	2 cut(s)	520, 1042
PfoI	TCCNGGA	1 cut(s)	725
PkrI	GCNGC	3 cut(s)	27, 305, 891
PleI	GAGTC	1 cut(s)	716
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	716
Ppu21I	YACGTR	1 cut(s)	34
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	324
PspCI	CACGTG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	97, 534
PspPI	GGNCC	2 cut(s)	525, 771
PsrI	GAACNNNNNNTAC	2 cut(s)	352, 384
RsaI	GTAC	2 cut(s)	493, 779
RsaNI	GTAC	2 cut(s)	492, 778
RseI	CAYNNNNRTG	1 cut(s)	572
Rsr2I	CGGWCCG	1 cut(s)	525
RsrII	CGGWCCG	1 cut(s)	525
SacII	CCGCGG	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	2 cut(s)	633, 717
SatI	GCNGC	3 cut(s)	26, 304, 890
Sau96I	GGNCC	2 cut(s)	525, 771
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	3 cut(s)	326, 727, 775
SduI	GDGCHC	1 cut(s)	826
SfaNI	GCATC	2 cut(s)	529, 748
Sfr303I	CCGCGG	1 cut(s)	531
SgrBI	CCGCGG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	525, 771
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	7 cut(s)	104, 125, 250, 705, 933, 951, 1047
SseBI	AGGCCT	2 cut(s)	16, 748
SsiI	CCGC	5 cut(s)	260, 266, 346, 528, 530
SspMI	CTAG	2 cut(s)	12, 1093
StuI	AGGCCT	2 cut(s)	16, 748
StyD4I	CCNGG	3 cut(s)	324, 725, 773
TaaI	ACNGT	2 cut(s)	80, 491
TaiI	ACGT	3 cut(s)	36, 717, 1087
TaqI	TCGA	2 cut(s)	738, 879
TaqII	GACCGA	1 cut(s)	513
TasI	AATT	7 cut(s)	104, 125, 250, 705, 933, 951, 1047
TatI	WGTACW	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	520, 1042
Tru1I	TTAA	2 cut(s)	633, 717
Tru9I	TTAA	2 cut(s)	633, 717
TscAI	CASTG	1 cut(s)	931
TseI	GCWGC	3 cut(s)	25, 303, 889
TspDTI	ATGAA	5 cut(s)	98, 120, 243, 756, 857
TspRI	CASTG	1 cut(s)	931
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	2 cut(s)	525, 771
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	2 cut(s)	46, 670
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	734
XspI	CTAG	2 cut(s)	12, 1093
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.