Rmu_sc0002772.1_g000015

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002772.1
OG0013655
Physical Location & Seq
Reverse (-)
59600 .. 60031
432 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
atggatcaagctaacaccaatgatcagaagggaaaggctctgtctttcgccggcgtcagtatggccatagataatcggatgtttctcggcgatgtgagcgacatggacttggatcttctcgagcagatcttacctcacagtttcaagacgcagttgatccatataaagaagtccacaacagacagagatctgagtccagtgactaataagttgtggaagagcttctatgagaagatcgaatcaatctattcagtttcagagataatgaaggagtggaatctcaaatttaagtggtcggagttgtaccaggagaaatcaaaaagagtgaaagaggctgagaagaaagaagatgacaggaaactgagccagcaagttagggtttgcaagaaggttccaccatcttcaagcgacaaaagaaacaggccaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

143

Amino Acids

16.71

Weight (kDa)

9.23

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 30 - 126 1.6e-11 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 12, 120, 151
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 1 cut(s) 305
AgsI TTSAA 2 cut(s) 145, 405
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 2 cut(s) 11, 222
AluI AGCT 2 cut(s) 11, 222
AlwI GGATC 3 cut(s) 12, 120, 151
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 2 cut(s) 63, 422
ApoI RAATTY 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 65
BccI CCATC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 308
BclI TGATCA 1 cut(s) 22
BglII AGATCT 2 cut(s) 126, 187
Bme1390I CCNGG 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 84
BseMII CTCAG 3 cut(s) 182, 327, 353
BseNI ACTGG 1 cut(s) 197
BshFI GGCC 2 cut(s) 65, 424
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 51
BsnI GGCC 2 cut(s) 65, 424
BsoBI CYCGRG 1 cut(s) 119
Bsp143I GATC 7 cut(s) 4, 22, 112, 126, 156, 187, 234
BspANI GGCC 2 cut(s) 65, 424
BspCNI CTCAG 3 cut(s) 183, 328, 354
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 3 cut(s) 12, 120, 151
BspQI GCTCTTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 50
BssMI GATC 7 cut(s) 4, 22, 112, 126, 156, 187, 234
BssNI GRCGYC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 52, 368
BstDEI CTNAG 3 cut(s) 191, 336, 362
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 7 cut(s) 7, 25, 115, 129, 159, 190, 237
BstMBI GATC 7 cut(s) 4, 22, 112, 126, 156, 187, 234
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstX2I RGATCY 3 cut(s) 112, 126, 187
BstYI RGATCY 3 cut(s) 112, 126, 187
BsuRI GGCC 2 cut(s) 65, 424
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 2 cut(s) 52, 368
Cfr10I RCCGGY 1 cut(s) 50
CseI GACGC 2 cut(s) 43, 157
Csp6I GTAC 1 cut(s) 304
CviAII CATG 1 cut(s) 103
CviJI RGCY 7 cut(s) 11, 38, 65, 222, 335, 366, 424
CviKI_1 RGCY 7 cut(s) 11, 38, 65, 222, 335, 366, 424
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 3 cut(s) 191, 336, 362
DpnI GATC 7 cut(s) 6, 24, 114, 128, 158, 189, 236
DpnII GATC 7 cut(s) 4, 22, 112, 126, 156, 187, 234
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 106
FaiI YATR 6 cut(s) 62, 68, 104, 162, 164, 228
FatI CATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 22
FokI GGATG 1 cut(s) 91
HaeIII GGCC 2 cut(s) 65, 424
HapII CCGG 1 cut(s) 51
HgaI GACGC 2 cut(s) 43, 157
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 106
HinfI GANTC 3 cut(s) 193, 239, 277
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 5 cut(s) 27, 78, 192, 259, 298
Hpy188III TCNNGA 2 cut(s) 119, 145
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 3 cut(s) 22, 262, 382
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 3 cut(s) 191, 336, 362
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 106
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 7 cut(s) 4, 22, 112, 126, 156, 187, 234
LguI GCTCTTC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 64, 210, 293, 320, 340, 380, 406
MaeIII GTNAC 1 cut(s) 199
MalI GATC 7 cut(s) 6, 24, 114, 128, 158, 189, 236
MboI GATC 7 cut(s) 4, 22, 112, 126, 156, 187, 234
MboII GAAGA 6 cut(s) 107, 229, 244, 352, 359, 393
MflI RGATCY 3 cut(s) 112, 126, 187
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 284, 427
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 2 cut(s) 144, 325
Mox20I TGGCCA 1 cut(s) 65
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 221
MscI TGGCCA 1 cut(s) 65
MseI TTAA 2 cut(s) 288, 430
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 96
NaeI GCCGGC 1 cut(s) 52
NdeII GATC 7 cut(s) 4, 22, 112, 126, 156, 187, 234
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 393
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 212
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 239, 277
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 393
PsuI RGATCY 3 cut(s) 112, 126, 187
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 288, 430
Sau3AI GATC 7 cut(s) 4, 22, 112, 126, 156, 187, 234
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 308
SetI ASST 4 cut(s) 13, 136, 224, 393
Sfr274I CTCGAG 1 cut(s) 119
SgrAI CRCCGGYG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 284, 427
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 2 cut(s) 120, 237
TasI AATT 2 cut(s) 284, 427
TfiI GAWTC 2 cut(s) 239, 277
Tru1I TTAA 2 cut(s) 288, 430
Tru9I TTAA 2 cut(s) 288, 430
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 281
TspRI CASTG 1 cut(s) 204
XapI RAATTY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.