Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002779.1

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Forward (+)

55550 .. 58677

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgacgccatctaactccacgatcccaacccctctgggcttcgccggttttgttcgtcagatgtccgggaagctctccacgccgaaatcgggtgcgggtttggtcaagaaaaaaggcttcaaaggatcctttgcagaagcaggatcttatgctaagacatttgcagttttgtctggagtgcacagtttggttgtctgcattttgaagaggcttcgaggaaaggatgatgtcattaatgcaggagtagctggatgttgtaccggtctcgcccttagttttccaggtgcaccccagcaacttctacaaagttgtctcacttttggggccttttcatttattcttgaaggctttaataagcagcagccagctctggcacaatcatttcctctgagaatcaaaagtgaagaacgtccttcattggtgctccctcttcaactatcacttactggggaactgaaagagggtttcaccgctttctgtaactccttgaaaaatcacaagggcactcgcacagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

172

Amino Acids

18.14

Weight (kDa)

9.89

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	20 - 111	7e-17	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 471
AclWI	GGATC	4 cut(s)	16, 120, 133, 151
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	5 cut(s)	121, 205, 344, 434, 490
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	3 cut(s)	73, 248, 368
AluI	AGCT	3 cut(s)	73, 248, 368
Alw21I	GWGCWC	3 cut(s)	183, 289, 426
Alw26I	GTCTC	2 cut(s)	269, 317
Alw44I	GTGCAC	2 cut(s)	179, 285
AlwI	GGATC	4 cut(s)	16, 120, 133, 151
AoxI	GGCC	1 cut(s)	324
ApaLI	GTGCAC	2 cut(s)	179, 285
ApeKI	GCWGC	2 cut(s)	358, 361
AseI	ATTAAT	1 cut(s)	234
AsiGI	ACCGGT	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	460
BaeGI	GKGCMC	3 cut(s)	183, 289, 506
BamHI	GGATCC	1 cut(s)	125
Bbv12I	GWGCWC	3 cut(s)	183, 289, 426
BbvI	GCAGC	2 cut(s)	370, 373
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	269, 317
BisI	GCNGC	2 cut(s)	359, 362
BlsI	GCNGC	2 cut(s)	360, 363
Bme1390I	CCNGG	2 cut(s)	67, 282
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	127, 325
BmrFI	CCNGG	2 cut(s)	67, 282
BmrI	ACTGGG	1 cut(s)	456
BmuI	ACTGGG	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	2 cut(s)	44, 260
Bse1I	ACTGG	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	229, 257
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	451
BseSI	GKGCMC	3 cut(s)	183, 289, 506
BseXI	GCAGC	2 cut(s)	370, 373
BseYI	CCCAGC	1 cut(s)	291
BshFI	GGCC	1 cut(s)	326
BshTI	ACCGGT	1 cut(s)	260
BsiHKAI	GWGCWC	3 cut(s)	183, 289, 426
BsiSI	CCGG	3 cut(s)	45, 66, 261
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	269, 317
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	4 cut(s)	183, 289, 426, 506
Bsp143I	GATC	3 cut(s)	21, 125, 143
BspACI	CCGC	2 cut(s)	95, 471
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	127, 325
BspPI	GGATC	4 cut(s)	16, 120, 133, 151
BspTNI	GGTCTC	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	44, 260
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	2 cut(s)	44, 260
BssMI	GATC	3 cut(s)	21, 125, 143
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	2 cut(s)	200, 435
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	3 cut(s)	153, 272, 389
BstF5I	GGATG	2 cut(s)	229, 257
BstKTI	GATC	3 cut(s)	24, 128, 146
BstMAI	GTCTC	2 cut(s)	269, 317
BstMBI	GATC	3 cut(s)	21, 125, 143
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 245
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	65, 280
BstSLI	GKGCMC	3 cut(s)	183, 289, 506
BstV1I	GCAGC	2 cut(s)	370, 373
BstX2I	RGATCY	2 cut(s)	125, 143
BstYI	RGATCY	2 cut(s)	125, 143
BsuRI	GGCC	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	229, 257
Cac8I	GCNNGC	1 cut(s)	366
Cfr10I	RCCGGY	2 cut(s)	44, 260
Cfr13I	GGNCC	1 cut(s)	324
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	258
CspAI	ACCGGT	1 cut(s)	260
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	3 cut(s)	153, 272, 389
DpnI	GATC	3 cut(s)	23, 127, 145
DpnII	GATC	3 cut(s)	21, 125, 143
Eam1104I	CTCTTC	2 cut(s)	200, 435
EarI	CTCTTC	2 cut(s)	200, 435
Eco31I	GGTCTC	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	280
FaiI	YATR	1 cut(s)	150
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	359, 362
FokI	GGATG	2 cut(s)	236, 264
Fsp4HI	GCNGC	2 cut(s)	359, 362
GluI	GCNGC	2 cut(s)	359, 362
GsaI	CCCAGC	1 cut(s)	295
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	3 cut(s)	45, 66, 261
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	393
HpaII	CCGG	3 cut(s)	45, 66, 261
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	2 cut(s)	181, 287
Hpy188I	TCNGA	2 cut(s)	60, 390
Hpy188III	TCNNGA	3 cut(s)	106, 174, 341
Hpy8I	GTNNAC	2 cut(s)	181, 287
HpyAV	CCTTC	2 cut(s)	338, 423
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	6 cut(s)	134, 164, 181, 198, 239, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 245
HpyF3I	CTNAG	3 cut(s)	153, 272, 389
HpySE526I	ACGT	1 cut(s)	409
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	21, 125, 143
LmnI	GCTCC	1 cut(s)	429
Lsp1109I	GCAGC	2 cut(s)	370, 373
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	3 cut(s)	23, 127, 145
MboI	GATC	3 cut(s)	21, 125, 143
MboII	GAAGA	3 cut(s)	217, 416, 422
MflI	RGATCY	2 cut(s)	125, 143
MhlI	GDGCHC	4 cut(s)	183, 289, 426, 506
MnlI	CCTC	6 cut(s)	42, 201, 209, 396, 438, 454
MseI	TTAA	2 cut(s)	234, 351
MspI	CCGG	3 cut(s)	45, 66, 261
MspR9I	CCNGG	2 cut(s)	67, 282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	79, 245
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	21, 125, 143
NlaIV	GGNNCC	2 cut(s)	127, 325
PfeI	GAWTC	1 cut(s)	393
PfoI	TCCNGGA	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	360, 363
PshBI	ATTAAT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	127, 325
PspPI	GGNCC	1 cut(s)	324
PsuI	RGATCY	2 cut(s)	125, 143
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	234, 351
SatI	GCNGC	2 cut(s)	359, 362
Sau3AI	GATC	3 cut(s)	21, 125, 143
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	67, 282
SduI	GDGCHC	4 cut(s)	183, 289, 426, 506
SetI	ASST	5 cut(s)	75, 250, 286, 370, 412
SsiI	CCGC	2 cut(s)	95, 471
StyD4I	CCNGG	2 cut(s)	65, 280
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	2 cut(s)	234, 351
Tru9I	TTAA	2 cut(s)	234, 351
TseI	GCWGC	2 cut(s)	358, 361
TspDTI	ATGAA	2 cut(s)	321, 405
VneI	GTGCAC	2 cut(s)	179, 285
VspI	ATTAAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.