Rmu_sc0002859.1_g000007

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002859.1
OG0012723
Physical Location & Seq
Reverse (-)
53416 .. 53925
510 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
atgaagagagagattgatcacactcgcattgttctcatactcttcttttgcctcggcactgctactactgcgcaagaaccccatattttacacaatgcaggcttaacagactaccacatcaagcaaaggcggatccttaatgatggttccagaggtgagacagtcacgatgtcaccctcgcttatttttcccagcccgagaatcaagactgcctacattgccctccaagcgtggaagcaagccatgctctcagaccccctgggacacacagccaactgggttggatccaatgtctgcaactacactggagtcttctgtgctgaagctctcgacgacccaacaatagaaacagtcgctggcatcgatctaaaccatgctgacattgccgggtacctcccagaagagcttggccatcttatattctccaactccaccacctactccagcatgagattgcctgttgccaccaattattgccatcatggggcaccacctccaccattttactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

169

Amino Acids

18.67

Weight (kDa)

6.1

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 74 - 106 4.9e-07 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012723)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25550
fragaria_vesca FvH4_2g30240
malus_domestica MD08G1135200.v1.1 MD15G1114000.v1.1
prunus_persica Prupe.1G465200_v2.0.a1
pyrus_communis pycom08g11410 pycom15g10230
rosa_chinensis RchiOBHm_Chr6g0312631
rosa_laevigata RLG00000010309
rosa_multiflora Rmu_sc0002859.1_g000007 Rmu_sc0034244.1_g000001 Rmu_ssc0000412.1_g000003
rosa_roxburghii Rroxscaffold_7G00156630
rosa_rugosa Rorug06G0398000
rosa_samantha Rh6AG515300 Rh6BG524800 Rh6CG530200
rosa_wichuraiana Rw6G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 2 cut(s) 390, 487
AciI CCGC 1 cut(s) 130
AclWI GGATC 4 cut(s) 127, 140, 279, 292
AcoI YGGCCR 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 484
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 2 cut(s) 326, 406
AluI AGCT 2 cut(s) 326, 406
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 4 cut(s) 127, 140, 279, 292
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 1 cut(s) 409
Asp718I GGTACC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 165, 167
AvaI CYCGRG 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 411
BamHI GGATCC 2 cut(s) 132, 284
BanI GGYRCC 2 cut(s) 390, 487
BbsI GAAGAC 1 cut(s) 304
BccI CCATC 3 cut(s) 137, 420, 486
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 508
Bme1390I CCNGG 2 cut(s) 260, 388
BmeT110I CYCGRG 1 cut(s) 196
BmiI GGNNCC 5 cut(s) 134, 148, 286, 392, 489
BmrFI CCNGG 2 cut(s) 260, 388
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 2 cut(s) 327, 427
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 363
BsaJI CCNNGG 3 cut(s) 52, 258, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 281, 310
Bse3DI GCAATG 2 cut(s) 216, 381
BseBI CCWGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 52, 258, 259
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 2 cut(s) 216, 381
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 281, 310
BseSI GKGCMC 1 cut(s) 490
BseYI CCCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 411
BshNI GGYRCC 2 cut(s) 390, 487
BshVI ATCGAT 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 411
BsoBI CYCGRG 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 4 cut(s) 16, 132, 284, 364
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 263
BspDI ATCGAT 1 cut(s) 363
BspLI GGNNCC 5 cut(s) 134, 148, 286, 392, 489
BspPI GGATC 4 cut(s) 127, 140, 279, 292
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 2 cut(s) 390, 487
BsrDI GCAATG 2 cut(s) 216, 381
BsrI ACTGG 2 cut(s) 281, 310
BssECI CCNNGG 3 cut(s) 52, 258, 259
BssMI GATC 4 cut(s) 16, 132, 284, 364
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 163, 352
Bst6I CTCTTC 2 cut(s) 47, 396
BstAPI GCANNNNNTGC 1 cut(s) 244
BstC8I GCNNGC 3 cut(s) 100, 240, 358
BstDEI CTNAG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 19, 135, 287, 367
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 16, 132, 284, 364
BstMWI GCNNNNNNNGC 5 cut(s) 68, 218, 227, 244, 383
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 258, 386
BstSLI GKGCMC 1 cut(s) 490
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 132, 284
BstYI RGATCY 2 cut(s) 132, 284
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 1 cut(s) 411
BsuTUI ATCGAT 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 303
Cac8I GCNNGC 3 cut(s) 100, 240, 358
CaiI CAGNNNCTG 1 cut(s) 356
CfoI GCGC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 1 cut(s) 391
CviAII CATG 4 cut(s) 244, 374, 448, 482
CviJI RGCY 7 cut(s) 102, 195, 242, 272, 326, 406, 411
CviKI_1 RGCY 7 cut(s) 102, 195, 242, 272, 326, 406, 411
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 250
DpnI GATC 4 cut(s) 18, 134, 286, 366
DpnII GATC 4 cut(s) 16, 132, 284, 364
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 47, 396
EarI CTCTTC 2 cut(s) 47, 396
EciI GGCGGA 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 247, 377, 451, 485
FaiI YATR 7 cut(s) 38, 84, 245, 375, 419, 449, 483
FaqI GGGAC 1 cut(s) 276
FatI CATG 4 cut(s) 243, 373, 447, 481
FbaI TGATCA 1 cut(s) 16
FspBI CTAG 1 cut(s) 508
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 2 cut(s) 327, 427
HaeIII GGCC 1 cut(s) 411
HapII CCGG 1 cut(s) 387
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 247, 377, 451, 485
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 2 cut(s) 201, 309
HpaII CCGG 1 cut(s) 387
HphI GGTGA 2 cut(s) 165, 167
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 4 cut(s) 150, 166, 205, 329
Hpy99I CGWCG 1 cut(s) 335
HpyCH4III ACNGT 2 cut(s) 163, 352
HpyCH4V TGCA 2 cut(s) 98, 297
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 218, 227, 244, 383
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 4 cut(s) 247, 377, 451, 485
HspAI GCGC 1 cut(s) 71
KpnI GGTACC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 4 cut(s) 16, 132, 284, 364
LguI GCTCTTC 1 cut(s) 396
LweI GCATC 1 cut(s) 369
MaeI CTAG 1 cut(s) 508
MaeIII GTNAC 2 cut(s) 163, 171
MalI GATC 4 cut(s) 18, 134, 286, 366
MboI GATC 4 cut(s) 16, 132, 284, 364
MboII GAAGA 4 cut(s) 16, 34, 304, 413
MflI RGATCY 2 cut(s) 132, 284
MhlI GDGCHC 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 1 cut(s) 469
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 2 cut(s) 262, 450
MnlI CCTC 6 cut(s) 62, 146, 187, 233, 404, 504
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 2 cut(s) 104, 138
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 2 cut(s) 260, 388
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 5 cut(s) 68, 218, 227, 244, 383
NciI CCSGG 1 cut(s) 388
NdeII GATC 4 cut(s) 16, 132, 284, 364
NlaIII CATG 4 cut(s) 247, 377, 451, 485
NlaIV GGNNCC 5 cut(s) 134, 148, 286, 392, 489
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 163, 171
NsbI TGCGCA 1 cut(s) 72
PasI CCCWGGG 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 1 cut(s) 201
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 5 cut(s) 134, 148, 286, 392, 489
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 2 cut(s) 132, 284
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 104, 138
Sau3AI GATC 4 cut(s) 16, 132, 284, 364
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 2 cut(s) 260, 388
SduI GDGCHC 1 cut(s) 490
SetI ASST 6 cut(s) 157, 328, 396, 408, 440, 496
SfaNI GCATC 1 cut(s) 369
Sse9I AATT 1 cut(s) 469
SsiI CCGC 1 cut(s) 130
SspMI CTAG 1 cut(s) 508
StyD4I CCNGG 2 cut(s) 258, 386
TaaI ACNGT 2 cut(s) 163, 352
TaqI TCGA 2 cut(s) 330, 363
TasI AATT 1 cut(s) 469
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 2 cut(s) 104, 138
Tru9I TTAA 2 cut(s) 104, 138
TscAI CASTG 2 cut(s) 64, 310
TseFI GTSAC 2 cut(s) 163, 171
Tsp45I GTSAC 2 cut(s) 163, 171
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 64, 310
XspI CTAG 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.