Rmu_sc0002895.1_g000001

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002895.1
OG0009882
Physical Location & Seq
Reverse (-)
1 .. 4165
4165 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2805 bp
atggctagccggcaagcgacgaagctcagcaaatcggcgatggttttggcggccatgaacggcgcctccaaaacctcaacaagttccctctctcggtgtcgtgaaactgcggtggctgcctccaagttttccatgggcggctccgtggctcccttcaatgtcgtttgggatcgaaatcatgtcgtttcggccaagtatgtggcaaacactctcagtcggagctttcactcttcgggtcctcgtttcaactccgccggcagcgctgctcaggtcaccaccaaatgccctgcggtggctgcctccaagttttccatgggcggctccgtggctcccttcaatgtcgtttgggatcgaaatcatgtcgtttctgtggcaaacactctcagtcggagctttcactcttcgggtcctcgtttcaactccgccagcagcgctgctcaggctcagcagaatgagttcactgagatggcatgggagggcataattggggctgtggaagccgccagaaatagcaagcaacaagtggtggaatctgagcacttgatgaaagctatcttggagcagaaggatggtttggcgaggagaatcttcaccaaggctggtgtagacgacaccactgttctccaggccaccgatgacttcattgctcagcaacccaaggtgatgggtgcgaccagtggacctataataggcacgcatctcggcgctctgttggagaatgcccgaaggcagaagaaagaaatgaatgatgattttgtgtctgtggagcaccttgtgttggcgtttcagtccgacacacggtttggccagcaattgttcaaaaacctccagcttactgacaaggatttgaaggaggctgttaaacatgttcgtgggaatcagagagtcactgatcaaaatcctgaagggaaatatgaggctttgactaaatatgggaacgacttgactgagctcgccagtcgtggcaaacttgatccagttattggacgggatgatgaaatacgccgttgtatccaaatactgtccaggagaacaaaaaataatcccgttattattggagagcctggtgtcggaaaaactgcaatcgctgaaggattagcacaacggattgtgcgtggggatgttccggaacccctattgaacagaaagttgatttctttagatatgggttcattggtcgctggagccaagtttcgtggtgactttgaggaaagattgaaagctgtattgaaggaagttactgcttcaaatggacagatcatattattcattgatgagattcatactgttgtaggagcaggggctacaagtggtgcaatggatgctgggaacttgttgaaaccaatgcttgggcggggtgaactacggtgtataggagcaaccacgttgaatgagtacagaaaatacattgagaaggatcctgcactggagcgtaggtttcagcaggttttttgtggtcagccatctgtcgaagacacgatatccattcttcgtgggttgcgtgagcggtacgagctgcatcatggtgtgaaaatatcagatagtgcccttgtttctgcagcagttctttctgacagatacattacagaacgatttttgcctgacaaagccattgatcttgttgatgaagctgctgcaaagctgaaaatggagatcacatccaagccaactgagttagatgaggtagacagagctgtactgaagttggagatggagaagctatctttgcaaaatgacacagataaatcatcgaaagaaaggttaagcaagctggagagtgacctcgcattgctcaaacagaaacaaaaagaatttaatgaacagtgggatcttgagaaggctctcatgactcgaatacgatcaattaaagaagagattgatagagtaaaccaagagatggaagctgctgaacgtgcctatgacctaagtcgtgctgctgagctcaaatatggaactctaatgtccctgcaacgccagttagaagaggcggagaaaaacctttctgagtaccagaaatctggaaaatctttcctacgagaagaagtcaccgatcttgatattgctgagattgtaagcaaatggactggtatacccttgtcaaaccttcaacagtcggaaagagacaagctagtcatgctagaacaggtacttcataagagggtagtgggtcaagatatagccgtgaagtcggtagctgatgcaatcagacgttcaagggctggtctatcagacccaaaccgacctattgcaagtttcatgtttttgggacctactggtgtggggaaaacagagcttgcaaaggccttggccagctatctcttcaacacagaaaatgctctggttaggattgatatgagtgagtacatggaaaagcatgcagtttcacgtttggtgggtgctccgcctggttatgttggttatgaagaaggtggacaactaacagaagtggttcgtcgaagaccctattgtgtagtgctattcgatgaaatagagaaagcacatcaggacgtgttcaatattttgttacaattgctggatgatggaaggataactgactcacaaggaaggactgtaagcttcaccaattgtgttgtgataatgacctcaaatcttggttcccactatatacttgaaactcttcgtaatactcaagacagcaaggatgcagtatatgagttgatgaaaagacaagtggttgaattggcgagacagactttccgccctgagtttttgaatcgcgttgatgagtttatcgtgttccagcctttggactccaaagagatctgtaacattgttgagatacag

Protein Analysis

935

Amino Acids

103.83

Weight (kDa)

6.98

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 152 - 275 8.1e-29 Clp repeat (R) N-terminal domain
NBD_SMAX1 PF23569 332 - 432 1.2e-06 SMAX1 nucleotide binding domain
AAA PF00004 351 - 482 7.6e-13 ATPase family associated with various cellular activities (AAA)
AAA_lid_9 PF17871 489 - 591 5.5e-35 AAA lid domain
AAA_2 PF07724 747 - 916 6.3e-69 AAA domain (Cdc48 subfamily)
AAA_5 PF07728 752 - 873 3.3e-12 AAA domain (dynein-related subfamily)
AAA PF00004 753 - 875 2.9e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25140
fragaria_vesca FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 FvH4_2g40970
malus_domestica MD08G1058100.v1.1 MD15G1038200.v1.1
prunus_persica Prupe.1G392200_v2.0.a1
pyrus_communis pycom08g04820 pycom15g03540
rosa_chinensis RchiOBHm_Chr6g0299601
rosa_laevigata RLG00000011406
rosa_multiflora Rmu_sc0002895.1_g000001
rosa_roxburghii Rroxscaffold_7G00168520
rosa_rugosa Rorug06G0290800 Rorug06G0290900
rosa_samantha Rh6AG401700 Rh6BG410100 Rh6CG415700 Rh6DG402900
rosa_wichuraiana Rw6G035150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2129
Acc36I ACCTGC 1 cut(s) 1435
AccB1I GGYRCC 1 cut(s) 62
AccB7I CCANNNNNTGG 4 cut(s) 983, 1349, 1897, 2767
AccBSI CCGCTC 1 cut(s) 1507
AccI GTMKAC 3 cut(s) 606, 1686, 2089
AccII CGCG 1 cut(s) 2739
AccIII TCCGGA 1 cut(s) 1126
AclWI GGATC 6 cut(s) 177, 357, 968, 1412, 1425, 1836
AcoI YGGCCR 4 cut(s) 51, 189, 805, 2307
AcsI RAATTY 1 cut(s) 1811
AcuI CTGAAG 3 cut(s) 924, 1110, 1721
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 775
AfaI GTAC 6 cut(s) 1397, 1511, 1698, 2009, 2148, 2363
AfeI AGCGCT 2 cut(s) 262, 433
AflIII ACRYGT 2 cut(s) 865, 2508
AjiI CACGTC 1 cut(s) 2509
AjnI CCWGG 4 cut(s) 624, 1025, 1063, 2404
AjuI GAANNNNNNNTTGG 4 cut(s) 539, 557, 571, 589
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
Alw21I GWGCWC 5 cut(s) 540, 771, 954, 1944, 2401
Alw26I GTCTC 2 cut(s) 2115, 2701
AlwI GGATC 6 cut(s) 177, 357, 968, 1412, 1425, 1836
Aor13HI TCCGGA 1 cut(s) 1126
Aor51HI AGCGCT 2 cut(s) 262, 433
AoxI GGCC 6 cut(s) 51, 189, 627, 805, 2301, 2307
ApoI RAATTY 1 cut(s) 1811
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
Asp700I GAANNNNTTC 3 cut(s) 455, 2448, 2637
AspLEI GCGC 4 cut(s) 65, 263, 434, 707
AspS9I GGNCC 4 cut(s) 236, 407, 680, 2267
AsuHPI GGTGA 7 cut(s) 265, 583, 673, 1211, 1370, 2038, 2572
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 4 cut(s) 236, 407, 680, 2267
BaeGI GKGCMC 1 cut(s) 1549
BalI TGGCCA 2 cut(s) 807, 2309
BamHI GGATCC 1 cut(s) 1417
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 2 cut(s) 954, 1944
BbsI GAAGAC 2 cut(s) 1479, 2464
Bbv12I GWGCWC 5 cut(s) 540, 771, 954, 1944, 2401
BccI CCATC 8 cut(s) 34, 460, 563, 658, 1471, 1705, 1891, 2534
BceAI ACGGC 3 cut(s) 76, 990, 2165
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciT130I CCWGG 4 cut(s) 626, 1027, 1065, 2406
BciVI GTATCC 1 cut(s) 1022
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 2 cut(s) 2115, 2701
BfaI CTAG 3 cut(s) 6, 2129, 2138
BfmI CTRYAG 1 cut(s) 1557
BfoI RGCGCY 4 cut(s) 66, 264, 435, 708
BfuAI ACCTGC 1 cut(s) 1435
BfuI GTATCC 1 cut(s) 1022
BglII AGATCT 1 cut(s) 2781
BlpI GCTNAGC 4 cut(s) 26, 444, 648, 1938
Bme1390I CCNGG 4 cut(s) 626, 1027, 1065, 2406
Bme18I GGWCC 4 cut(s) 236, 407, 680, 2267
BmgBI CACGTC 1 cut(s) 2509
BmgT120I GGNCC 4 cut(s) 236, 407, 680, 2267
BmrFI CCNGG 4 cut(s) 626, 1027, 1065, 2406
BmsI GCATC 5 cut(s) 706, 1312, 1528, 2188, 2653
BmtI GCTAGC 1 cut(s) 9
BoxI GACNNNNGTC 1 cut(s) 1926
BpiI GAAGAC 2 cut(s) 1479, 2464
BpmI CTGGAG 5 cut(s) 608, 812, 1203, 1448, 1793
Bpu10I CCTNAGC 2 cut(s) 267, 438
Bpu1102I GCTNAGC 4 cut(s) 26, 444, 648, 1938
BpuEI CTTGAG 2 cut(s) 1853, 2634
BsaBI GATNNNNATC 3 cut(s) 174, 354, 897
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 7 cut(s) 132, 144, 312, 324, 594, 657, 2304
BsaWI WCCGGW 1 cut(s) 1126
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 1421, 1451
Bse118I RCCGGY 2 cut(s) 9, 254
Bse1I ACTGG 7 cut(s) 675, 957, 977, 1431, 1975, 2089, 2278
Bse3DI GCAATG 3 cut(s) 642, 1323, 1787
Bse8I GATNNNNATC 3 cut(s) 174, 354, 897
BseAI TCCGGA 1 cut(s) 1126
BseBI CCWGG 4 cut(s) 626, 1027, 1065, 2406
BseDI CCNNGG 7 cut(s) 132, 144, 312, 324, 594, 657, 2304
BseGI GGATG 7 cut(s) 574, 997, 1126, 1327, 1658, 2542, 2668
BseJI GATNNNNATC 3 cut(s) 174, 354, 897
BseMI GCAATG 3 cut(s) 642, 1323, 1787
BseNI ACTGG 7 cut(s) 675, 957, 977, 1431, 1975, 2089, 2278
BseRI GAGGAG 1 cut(s) 595
BseSI GKGCMC 1 cut(s) 1549
BseYI CCCAGC 1 cut(s) 1325
BsgI GTGCAG 1 cut(s) 1407
Bsh1236I CGCG 1 cut(s) 2739
BshFI GGCC 6 cut(s) 53, 191, 629, 807, 2303, 2309
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 5 cut(s) 540, 771, 954, 1944, 2401
BsiSI CCGG 3 cut(s) 10, 255, 1127
BslFI GGGAC 2 cut(s) 1948, 2280
BsmAI GTCTC 2 cut(s) 2115, 2701
BsmFI GGGAC 2 cut(s) 1948, 2280
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 6 cut(s) 53, 191, 629, 807, 2303, 2309
Bsp1286I GDGCHC 6 cut(s) 540, 771, 954, 1549, 1944, 2401
Bsp13I TCCGGA 1 cut(s) 1126
Bsp1720I GCTNAGC 4 cut(s) 26, 444, 648, 1938
Bsp19I CCATGG 2 cut(s) 132, 312
BspANI GGCC 6 cut(s) 53, 191, 629, 807, 2303, 2309
BspEI TCCGGA 1 cut(s) 1126
BspFNI CGCG 1 cut(s) 2739
BspHI TCATGA 1 cut(s) 1845
BspMAI CTGCAG 1 cut(s) 1561
BspMI ACCTGC 1 cut(s) 1435
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 6 cut(s) 177, 357, 968, 1412, 1425, 1836
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 1507
BsrDI GCAATG 3 cut(s) 642, 1323, 1787
BsrFI RCCGGY 2 cut(s) 9, 254
BsrI ACTGG 7 cut(s) 675, 957, 977, 1431, 1975, 2089, 2278
BssAI RCCGGY 2 cut(s) 9, 254
BssECI CCNNGG 7 cut(s) 132, 144, 312, 324, 594, 657, 2304
BssNAI GTATAC 1 cut(s) 2090
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 5 cut(s) 132, 312, 594, 657, 2304
Bst1107I GTATAC 1 cut(s) 2090
Bst2UI CCWGG 4 cut(s) 626, 1027, 1065, 2406
Bst4CI ACNGT 8 cut(s) 619, 801, 1023, 1288, 1368, 1824, 2112, 2572
Bst6I CTCTTC 6 cut(s) 235, 406, 1866, 1977, 2324, 2643
BstACI GRCGYC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 1322
BstDSI CCRYGG 4 cut(s) 132, 144, 312, 324
BstEII GGTNACC 1 cut(s) 271
BstENI CCTNNNNNAGG 1 cut(s) 687
BstF5I GGATG 7 cut(s) 574, 997, 1126, 1327, 1658, 2542, 2668
BstFNI CGCG 1 cut(s) 2739
BstH2I RGCGCY 4 cut(s) 66, 264, 435, 708
BstHHI GCGC 4 cut(s) 65, 263, 434, 707
BstMAI GTCTC 2 cut(s) 2115, 2701
BstNI CCWGG 4 cut(s) 626, 1027, 1065, 2406
BstNSI RCATGY 2 cut(s) 869, 2378
BstPAI GACNNNNGTC 1 cut(s) 1926
BstPI GGTNACC 1 cut(s) 271
BstSCI CCNGG 4 cut(s) 624, 1025, 1063, 2404
BstSFI CTRYAG 1 cut(s) 1557
BstSLI GKGCMC 1 cut(s) 1549
BstUI CGCG 1 cut(s) 2739
BstV2I GAAGAC 2 cut(s) 1479, 2464
BstX2I RGATCY 3 cut(s) 1417, 1828, 2781
BstXI CCANNNNNNTGG 3 cut(s) 199, 664, 2018
BstYI RGATCY 3 cut(s) 1417, 1828, 2781
BstZ17I GTATAC 1 cut(s) 2090
BsuI GTATCC 1 cut(s) 1022
BsuRI GGCC 6 cut(s) 53, 191, 629, 807, 2303, 2309
BtgI CCRYGG 4 cut(s) 132, 144, 312, 324
BtgZI GCGATG 1 cut(s) 53
BtrI CACGTC 1 cut(s) 2509
BtsCI GGATG 7 cut(s) 574, 997, 1126, 1327, 1658, 2542, 2668
BtsIMutI CAGTG 6 cut(s) 459, 615, 682, 888, 1424, 1829
BveI ACCTGC 1 cut(s) 1435
CciI TCATGA 1 cut(s) 1845
CfoI GCGC 4 cut(s) 65, 263, 434, 707
Cfr10I RCCGGY 2 cut(s) 9, 254
Cfr13I GGNCC 4 cut(s) 236, 407, 680, 2267
Csp6I GTAC 6 cut(s) 1396, 1510, 1697, 2008, 2147, 2362
CspCI CAANNNNNGTGG 2 cut(s) 1177, 1212
CviQI GTAC 6 cut(s) 1396, 1510, 1697, 2008, 2147, 2362
DinI GGCGCC 1 cut(s) 64
DraIII CACNNNGTG 1 cut(s) 775
DrdI GACNNNNNNGTC 1 cut(s) 2129
DseDI GACNNNNNNGTC 1 cut(s) 2129
EaeI YGGCCR 4 cut(s) 51, 189, 805, 2307
Eam1104I CTCTTC 6 cut(s) 235, 406, 1866, 1977, 2324, 2643
EarI CTCTTC 6 cut(s) 235, 406, 1866, 1977, 2324, 2643
EciI GGCGGA 5 cut(s) 241, 412, 2003, 2391, 2708
Ecl136II GAGCTC 2 cut(s) 952, 1942
Eco130I CCWWGG 5 cut(s) 132, 312, 594, 657, 2304
Eco147I AGGCCT 1 cut(s) 2303
Eco24I GRGCYC 2 cut(s) 954, 1944
Eco32I GATATC 1 cut(s) 1482
Eco47I GGWCC 4 cut(s) 236, 407, 680, 2267
Eco47III AGCGCT 2 cut(s) 262, 433
Eco53kI GAGCTC 2 cut(s) 952, 1942
Eco57I CTGAAG 3 cut(s) 924, 1110, 1721
Eco91I GGTNACC 1 cut(s) 271
EcoICRI GAGCTC 2 cut(s) 952, 1942
EcoNI CCTNNNNNAGG 1 cut(s) 687
EcoO109I RGGNCCY 3 cut(s) 236, 407, 2267
EcoO65I GGTNACC 1 cut(s) 271
EcoRII CCWGG 4 cut(s) 624, 1025, 1063, 2404
EcoRV GATATC 1 cut(s) 1482
EcoT14I CCWWGG 5 cut(s) 132, 312, 594, 657, 2304
EcoT38I GRGCYC 2 cut(s) 954, 1944
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 5 cut(s) 132, 312, 594, 657, 2304
FaqI GGGAC 2 cut(s) 1948, 2280
FauI CCCGC 1 cut(s) 1347
FbaI TGATCA 1 cut(s) 892
FblI GTMKAC 3 cut(s) 606, 1686, 2089
FokI GGATG 7 cut(s) 581, 1004, 1133, 1334, 1645, 2549, 2675
FriOI GRGCYC 2 cut(s) 954, 1944
FspBI CTAG 3 cut(s) 6, 2129, 2138
GlaI GCGC 4 cut(s) 64, 262, 433, 706
GsaI CCCAGC 1 cut(s) 1329
GsuI CTGGAG 5 cut(s) 608, 812, 1203, 1448, 1793
HaeII RGCGCY 4 cut(s) 66, 264, 435, 708
HaeIII GGCC 6 cut(s) 53, 191, 629, 807, 2303, 2309
HapII CCGG 3 cut(s) 10, 255, 1127
HhaI GCGC 4 cut(s) 65, 263, 434, 707
Hin1I GRCGYC 1 cut(s) 63
Hin6I GCGC 4 cut(s) 63, 261, 432, 705
HinP1I GCGC 4 cut(s) 63, 261, 432, 705
HindIII AAGCTT 1 cut(s) 2575
HinfI GANTC 9 cut(s) 530, 585, 877, 885, 1279, 1849, 2555, 2734, 2771
HpaII CCGG 3 cut(s) 10, 255, 1127
HphI GGTGA 7 cut(s) 265, 583, 673, 1211, 1370, 2038, 2572
Hpy166II GTNNAC 8 cut(s) 459, 607, 680, 1361, 1687, 1888, 2090, 2432
Hpy8I GTNNAC 8 cut(s) 459, 607, 680, 1361, 1687, 1888, 2090, 2432
Hpy99I CGWCG 2 cut(s) 22, 2457
HpyCH4III ACNGT 8 cut(s) 619, 801, 1023, 1288, 1368, 1824, 2112, 2572
HpyCH4IV ACGT 5 cut(s) 1385, 1912, 2209, 2386, 2508
HpySE526I ACGT 5 cut(s) 1385, 1912, 2209, 2386, 2508
Hsp92I GRCGYC 1 cut(s) 63
HspAI GCGC 4 cut(s) 63, 261, 432, 705
KasI GGCGCC 1 cut(s) 62
Kpn2I TCCGGA 1 cut(s) 1126
KroI GCCGGC 2 cut(s) 9, 254
KroNI GCCGGC 2 cut(s) 11, 256
Ksp22I TGATCA 1 cut(s) 892
LweI GCATC 5 cut(s) 706, 1312, 1528, 2188, 2653
MaeI CTAG 3 cut(s) 6, 2129, 2138
MaeII ACGT 5 cut(s) 1385, 1912, 2209, 2386, 2508
MaeIII GTNAC 8 cut(s) 271, 886, 1199, 1237, 1778, 2044, 2523, 2786
MbiI CCGCTC 1 cut(s) 1507
MfeI CAATTG 3 cut(s) 812, 2528, 2584
MflI RGATCY 3 cut(s) 1417, 1828, 2781
MhlI GDGCHC 6 cut(s) 540, 771, 954, 1549, 1944, 2401
MlsI TGGCCA 2 cut(s) 807, 2309
MluCI AATT 7 cut(s) 483, 812, 1811, 1863, 2528, 2584, 2699
MluNI TGGCCA 2 cut(s) 807, 2309
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 4 cut(s) 894, 1843, 2549, 2765
MmeI TCCRAC 7 cut(s) 197, 368, 693, 816, 1051, 1686, 2094
Mox20I TGGCCA 2 cut(s) 807, 2309
MroI TCCGGA 1 cut(s) 1126
MroNI GCCGGC 2 cut(s) 9, 254
MroXI GAANNNNTTC 3 cut(s) 455, 2448, 2637
MscI TGGCCA 2 cut(s) 807, 2309
MseI TTAA 4 cut(s) 861, 1763, 1815, 1866
MslI CAYNNNNRTG 3 cut(s) 464, 870, 1524
Msp20I TGGCCA 2 cut(s) 807, 2309
MspI CCGG 3 cut(s) 10, 255, 1127
MspR9I CCNGG 4 cut(s) 626, 1027, 1065, 2406
MunI CAATTG 3 cut(s) 812, 2528, 2584
Mva1269I GAATGC 1 cut(s) 724
MvaI CCWGG 4 cut(s) 626, 1027, 1065, 2406
MvnI CGCG 1 cut(s) 2739
NaeI GCCGGC 2 cut(s) 11, 256
NarI GGCGCC 1 cut(s) 63
NcoI CCATGG 2 cut(s) 132, 312
NgoMIV GCCGGC 2 cut(s) 9, 254
NheI GCTAGC 1 cut(s) 5
NmeAIII GCCGAG 1 cut(s) 681
NmuCI GTSAC 5 cut(s) 271, 886, 1199, 1778, 2044
NspI RCATGY 2 cut(s) 869, 2378
PaeI GCATGC 1 cut(s) 2378
PagI TCATGA 1 cut(s) 1845
PceI AGGCCT 1 cut(s) 2303
PciI ACATGT 1 cut(s) 865
PcsI WCGNNNNNNNCGW 2 cut(s) 1111, 1498
PctI GAATGC 1 cut(s) 724
PdiI GCCGGC 2 cut(s) 11, 256
PdmI GAANNNNTTC 3 cut(s) 455, 2448, 2637
PfeI GAWTC 5 cut(s) 530, 585, 877, 1279, 2734
PflMI CCANNNNNTGG 4 cut(s) 983, 1349, 1897, 2767
PfoI TCCNGGA 1 cut(s) 1025
PleI GAGTC 4 cut(s) 893, 1843, 2549, 2765
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 4 cut(s) 893, 1843, 2549, 2765
PpuMI RGGWCCY 3 cut(s) 236, 407, 2267
PscI ACATGT 1 cut(s) 865
PshAI GACNNNNGTC 1 cut(s) 1926
Psp124BI GAGCTC 2 cut(s) 954, 1944
Psp5II RGGWCCY 3 cut(s) 236, 407, 2267
Psp6I CCWGG 4 cut(s) 624, 1025, 1063, 2404
PspEI GGTNACC 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 1325
PspGI CCWGG 4 cut(s) 624, 1025, 1063, 2404
PspPI GGNCC 4 cut(s) 236, 407, 680, 2267
PspPPI RGGWCCY 3 cut(s) 236, 407, 2267
PstI CTGCAG 1 cut(s) 1561
PsuI RGATCY 3 cut(s) 1417, 1828, 2781
RsaI GTAC 6 cut(s) 1397, 1511, 1698, 2009, 2148, 2363
RsaNI GTAC 6 cut(s) 1396, 1510, 1697, 2008, 2147, 2362
RseI CAYNNNNRTG 3 cut(s) 464, 870, 1524
SacI GAGCTC 2 cut(s) 954, 1944
SaqAI TTAA 4 cut(s) 861, 1763, 1815, 1866
Sau96I GGNCC 4 cut(s) 236, 407, 680, 2267
SchI GAGTC 4 cut(s) 894, 1843, 2549, 2765
ScrFI CCNGG 4 cut(s) 626, 1027, 1065, 2406
SduI GDGCHC 6 cut(s) 540, 771, 954, 1549, 1944, 2401
SfaNI GCATC 5 cut(s) 706, 1312, 1528, 2188, 2653
SfcI CTRYAG 1 cut(s) 1557
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 4 cut(s) 236, 407, 680, 2267
SmiMI CAYNNNNRTG 3 cut(s) 464, 870, 1524
SmlI CTYRAG 2 cut(s) 1832, 2649
SmoI CTYRAG 2 cut(s) 1832, 2649
SphI GCATGC 1 cut(s) 2378
Sse9I AATT 7 cut(s) 483, 812, 1811, 1863, 2528, 2584, 2699
SseBI AGGCCT 1 cut(s) 2303
SspDI GGCGCC 1 cut(s) 62
SspI AATATT 1 cut(s) 2518
SspMI CTAG 3 cut(s) 6, 2129, 2138
SstI GAGCTC 2 cut(s) 954, 1944
StuI AGGCCT 1 cut(s) 2303
StyD4I CCNGG 4 cut(s) 624, 1025, 1063, 2404
StyI CCWWGG 5 cut(s) 132, 312, 594, 657, 2304
TaaI ACNGT 8 cut(s) 619, 801, 1023, 1288, 1368, 1824, 2112, 2572
TaiI ACGT 5 cut(s) 1388, 1915, 2212, 2389, 2511
TaqI TCGA 7 cut(s) 172, 352, 1470, 1751, 1852, 2455, 2481
TasI AATT 7 cut(s) 483, 812, 1811, 1863, 2528, 2584, 2699
TatI WGTACW 3 cut(s) 1395, 1696, 2361
TauI GCSGC 4 cut(s) 53, 141, 321, 503
TfiI GAWTC 5 cut(s) 530, 585, 877, 1279, 2734
Tru1I TTAA 4 cut(s) 861, 1763, 1815, 1866
Tru9I TTAA 4 cut(s) 861, 1763, 1815, 1866
TscAI CASTG 6 cut(s) 466, 622, 682, 895, 1431, 1829
TseFI GTSAC 5 cut(s) 271, 886, 1199, 1778, 2044
Tsp45I GTSAC 5 cut(s) 271, 886, 1199, 1778, 2044
TspGWI ACGGA 3 cut(s) 133, 313, 1120
TspRI CASTG 6 cut(s) 466, 622, 682, 895, 1431, 1829
Van91I CCANNNNNTGG 4 cut(s) 983, 1349, 1897, 2767
VpaK11BI GGWCC 4 cut(s) 236, 407, 680, 2267
XagI CCTNNNNNAGG 1 cut(s) 687
XapI RAATTY 1 cut(s) 1811
XceI RCATGY 2 cut(s) 869, 2378
XcmI CCANNNNNNNNNTGG 2 cut(s) 130, 310
XmiI GTMKAC 3 cut(s) 606, 1686, 2089
XmnI GAANNNNTTC 3 cut(s) 455, 2448, 2637
XspI CTAG 3 cut(s) 6, 2129, 2138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.