Rmu_sc0002909.1_g000002

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002909.1
OG0012769
Physical Location & Seq
Reverse (-)
14293 .. 15664
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
atggctccaagtttcaatgatgaaaactcactattcaactttgttgtcagggatggcaatggtgtgaagggcatggtggacttaggcctatccaaagtacctgaacaatacatacaaccacctcatgagcgtatactgaagcttaatgcaagctcactaaatgagctcagaccaatcgatctgtctaagcttgatgcggttgatcatgaacaagtggctaatgagatcgttaatgctgccgagtcactgaaagatgctgcaaacaatttcttcgagcaagcgccggagaagaaagctgcttaccgaaaaggtgtgagcccgagccgatacgtgaagtatggaacgagttttgtgccggagaaagagaaggctttggagtggaaggactatgttagcatggtgtactctagtgatgctgatgctctcagtcactggcctaacgagtgcaaggaagttgcacttgagtaccttaaaacatcaatgcatatggtaaagcaaatagtgaaaactttgattgagaagctcggagtgacacttgaggactcaaaactagatggactcgttgggttaaagatggttgaagaagacatgaatgctggaaagaaaggagagtggatcgagatccgtcctatccctggagctttggtcatcaacattggtgatacattacagatacttagtaatgggagatataaaagtgccgaacacagagttcgaactacaaacgctcaagtgtctgtttcgatatttaccattccaaatccaacagaaataattgggccgctgccggaggtggtggcgcctgatggagaggctcgttaccgtgacatggtttttggagattatatgaacaactttttcggcaatgcacatgagggcaagaagtctctggattatgcccagattaataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01110 map00940 map01110
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

304

Amino Acids

33.94

Weight (kDa)

5.31

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 200 - 250 1.3e-13 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12900
fragaria_vesca FvH4_3g15580
malus_domestica MD00G1188900.v1.1 MD05G1221300.v1.1
prunus_persica Prupe.4G138300_v2.0.a1
pyrus_communis pycom05g20470
rosa_chinensis RchiOBHm_Chr5g0026211
rosa_laevigata RLG00000032912
rosa_multiflora Rmu_co8420971.1_g000001 Rmu_sc0002909.1_g000002 Rmu_sc0005061.1_g000001
rosa_roxburghii Rroxscaffold_1G00053100
rosa_rugosa Rorug05G0091600
rosa_samantha Rh5AG184500 Rh5BG181400 Rh5CG200500 Rh5DG183100
rosa_wichuraiana Rw5G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 799
AccI GTMKAC 1 cut(s) 133
AciI CCGC 2 cut(s) 197, 782
AclWI GGATC 2 cut(s) 616, 623
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 800
AfaI GTAC 3 cut(s) 99, 404, 467
AfiI CCNNNNNNNGG 2 cut(s) 635, 829
AgsI TTSAA 3 cut(s) 16, 37, 581
AjnI CCWGG 1 cut(s) 634
AluBI AGCT 7 cut(s) 142, 153, 166, 190, 296, 523, 641
AluI AGCT 7 cut(s) 142, 153, 166, 190, 296, 523, 641
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 891
AlwI GGATC 2 cut(s) 616, 623
AlwNI CAGNNNCTG 1 cut(s) 432
Ama87I CYCGRG 1 cut(s) 319
AoxI GGCC 3 cut(s) 85, 434, 779
ApeKI GCWGC 4 cut(s) 236, 257, 296, 784
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
AseI ATTAAT 1 cut(s) 906
AspLEI GCGC 2 cut(s) 283, 802
AspS9I GGNCC 1 cut(s) 779
AsuHPI GGTGA 1 cut(s) 671
AsuII TTCGAA 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 319
BaeI ACNNNNGTAYC 2 cut(s) 449, 482
BanI GGYRCC 1 cut(s) 799
BanII GRGCYC 2 cut(s) 168, 320
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 4 cut(s) 223, 244, 283, 771
BccI CCATC 4 cut(s) 47, 548, 568, 800
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 636
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 891
BfaI CTAG 2 cut(s) 408, 551
BfoI RGCGCY 2 cut(s) 284, 803
BisI GCNGC 5 cut(s) 237, 258, 297, 782, 785
BlsI GCNGC 5 cut(s) 238, 259, 298, 783, 786
Bme1390I CCNGG 1 cut(s) 636
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 779
BmiI GGNNCC 2 cut(s) 6, 801
BmrFI CCNGG 1 cut(s) 636
BmsI GCATC 4 cut(s) 184, 244, 403, 409
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 1 cut(s) 657
Bpu14I TTCGAA 1 cut(s) 715
BpuEI CTTGAG 3 cut(s) 482, 557, 714
Bsa29I ATCGAT 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 620
BsaHI GRCGYC 1 cut(s) 800
BsaJI CCNNGG 1 cut(s) 634
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 635, 829
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 2 cut(s) 64, 871
Bse8I GATNNNNATC 1 cut(s) 620
BseBI CCWGG 1 cut(s) 636
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 634
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 620
BseLI CCNNNNNNNGG 2 cut(s) 635, 829
BseMI GCAATG 2 cut(s) 64, 871
BseMII CTCAG 2 cut(s) 181, 439
BseNI ACTGG 1 cut(s) 437
BseXI GCAGC 4 cut(s) 223, 244, 283, 771
BshFI GGCC 3 cut(s) 87, 436, 781
BshNI GGYRCC 1 cut(s) 799
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 3 cut(s) 284, 356, 788
BslI CCNNNNNNNGG 2 cut(s) 635, 829
BsmAI GTCTC 1 cut(s) 891
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 3 cut(s) 87, 436, 781
BsoBI CYCGRG 1 cut(s) 319
Bsp119I TTCGAA 1 cut(s) 715
Bsp1286I GDGCHC 2 cut(s) 168, 320
Bsp143I GATC 5 cut(s) 178, 202, 225, 615, 621
BspACI CCGC 2 cut(s) 197, 782
BspANI GGCC 3 cut(s) 87, 436, 781
BspCNI CTCAG 2 cut(s) 180, 438
BspDI ATCGAT 1 cut(s) 177
BspHI TCATGA 2 cut(s) 124, 205
BspLI GGNNCC 2 cut(s) 6, 801
BspPI GGATC 2 cut(s) 616, 623
BspT104I TTCGAA 1 cut(s) 715
BspT107I GGYRCC 1 cut(s) 799
BsrDI GCAATG 2 cut(s) 64, 871
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 634
BssMI GATC 5 cut(s) 178, 202, 225, 615, 621
BssNAI GTATAC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 800
Bst1107I GTATAC 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 1 cut(s) 824
BstACI GRCGYC 1 cut(s) 800
BstBAI YACGTR 1 cut(s) 331
BstBI TTCGAA 1 cut(s) 715
BstC8I GCNNGC 2 cut(s) 151, 279
BstDEI CTNAG 5 cut(s) 82, 167, 186, 425, 677
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 2 cut(s) 284, 803
BstHHI GCGC 2 cut(s) 283, 802
BstKTI GATC 5 cut(s) 181, 205, 228, 618, 624
BstMAI GTCTC 1 cut(s) 891
BstMBI GATC 5 cut(s) 178, 202, 225, 615, 621
BstNI CCWGG 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 634
BstV1I GCAGC 4 cut(s) 223, 244, 283, 771
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
BstZ17I GTATAC 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 3 cut(s) 87, 436, 781
BsuTUI ATCGAT 1 cut(s) 177
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 2 cut(s) 245, 430
Cac8I GCNNGC 2 cut(s) 151, 279
CaiI CAGNNNCTG 1 cut(s) 432
CciI TCATGA 2 cut(s) 124, 205
CfoI GCGC 2 cut(s) 283, 802
Cfr13I GGNCC 1 cut(s) 779
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 3 cut(s) 98, 403, 466
CviAII CATG 7 cut(s) 73, 125, 206, 397, 589, 829, 872
CviQI GTAC 3 cut(s) 98, 403, 466
DdeI CTNAG 5 cut(s) 82, 167, 186, 425, 677
DinI GGCGCC 1 cut(s) 801
DpnI GATC 5 cut(s) 180, 204, 227, 617, 623
DpnII GATC 5 cut(s) 178, 202, 225, 615, 621
Ecl136II GAGCTC 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 87
Eco24I GRGCYC 2 cut(s) 168, 320
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 634
EcoT22I ATGCAT 1 cut(s) 486
EcoT38I GRGCYC 2 cut(s) 168, 320
EgeI GGCGCC 1 cut(s) 801
EheI GGCGCC 1 cut(s) 801
FaeI CATG 7 cut(s) 76, 128, 209, 400, 592, 832, 875
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 7 cut(s) 72, 124, 205, 396, 588, 828, 871
FauNDI CATATG 1 cut(s) 486
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 5 cut(s) 237, 258, 297, 782, 785
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 2 cut(s) 168, 320
Fsp4HI GCNGC 5 cut(s) 237, 258, 297, 782, 785
FspBI CTAG 2 cut(s) 408, 551
GlaI GCGC 2 cut(s) 282, 801
GluI GCNGC 5 cut(s) 237, 258, 297, 782, 785
GsuI CTGGAG 1 cut(s) 657
HaeII RGCGCY 2 cut(s) 284, 803
HaeIII GGCC 3 cut(s) 87, 436, 781
HapII CCGG 3 cut(s) 284, 356, 788
HhaI GCGC 2 cut(s) 283, 802
Hin1I GRCGYC 1 cut(s) 800
Hin1II CATG 7 cut(s) 76, 128, 209, 400, 592, 832, 875
Hin6I GCGC 2 cut(s) 281, 800
HinP1I GCGC 2 cut(s) 281, 800
HindIII AAGCTT 2 cut(s) 140, 188
HinfI GANTC 3 cut(s) 242, 542, 558
HpaII CCGG 3 cut(s) 284, 356, 788
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 3 cut(s) 79, 134, 403
Hpy188I TCNGA 2 cut(s) 170, 527
Hpy188III TCNNGA 4 cut(s) 125, 206, 619, 890
Hpy8I GTNNAC 3 cut(s) 79, 134, 403
HpyAV CCTTC 3 cut(s) 61, 361, 376
HpyCH4III ACNGT 1 cut(s) 824
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 6 cut(s) 149, 260, 447, 458, 484, 869
HpyF3I CTNAG 5 cut(s) 82, 167, 186, 425, 677
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 800
Hsp92II CATG 7 cut(s) 76, 128, 209, 400, 592, 832, 875
HspAI GCGC 2 cut(s) 281, 800
KasI GGCGCC 1 cut(s) 799
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 5 cut(s) 178, 202, 225, 615, 621
LmnI GCTCC 2 cut(s) 10, 638
Lsp1109I GCAGC 4 cut(s) 223, 244, 283, 771
LweI GCATC 4 cut(s) 184, 244, 403, 409
MaeI CTAG 2 cut(s) 408, 551
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 5 cut(s) 243, 428, 529, 818, 824
MalI GATC 5 cut(s) 180, 204, 227, 617, 623
MboI GATC 5 cut(s) 178, 202, 225, 615, 621
MboII GAAGA 4 cut(s) 262, 301, 593, 596
MflI RGATCY 1 cut(s) 621
MhlI GDGCHC 2 cut(s) 168, 320
MluCI AATT 3 cut(s) 265, 774, 910
Mly113I GGCGCC 1 cut(s) 800
MlyI GAGTC 3 cut(s) 251, 536, 552
MmeI TCCRAC 1 cut(s) 788
MnlI CCTC 5 cut(s) 132, 532, 784, 805, 868
Mph1103I ATGCAT 1 cut(s) 486
MseI TTAA 5 cut(s) 144, 231, 471, 569, 906
MspA1I CMGCKG 1 cut(s) 784
MspI CCGG 3 cut(s) 284, 356, 788
MspR9I CCNGG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 1 cut(s) 636
NarI GGCGCC 1 cut(s) 800
NdeI CATATG 1 cut(s) 486
NdeII GATC 5 cut(s) 178, 202, 225, 615, 621
NlaIII CATG 7 cut(s) 76, 128, 209, 400, 592, 832, 875
NlaIV GGNNCC 2 cut(s) 6, 801
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 4 cut(s) 243, 428, 529, 824
NsiI ATGCAT 1 cut(s) 486
NspV TTCGAA 1 cut(s) 715
PagI TCATGA 2 cut(s) 124, 205
PceI AGGCCT 1 cut(s) 87
PctI GAATGC 1 cut(s) 598
PkrI GCNGC 5 cut(s) 238, 259, 298, 783, 786
PleI GAGTC 3 cut(s) 250, 536, 552
PluTI GGCGCC 1 cut(s) 803
PpsI GAGTC 3 cut(s) 250, 536, 552
Ppu21I YACGTR 1 cut(s) 331
PshBI ATTAAT 1 cut(s) 906
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 634
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 2 cut(s) 6, 801
PspPI GGNCC 1 cut(s) 779
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
PstNI CAGNNNCTG 1 cut(s) 432
PsuI RGATCY 1 cut(s) 621
RsaI GTAC 3 cut(s) 99, 404, 467
RsaNI GTAC 3 cut(s) 98, 403, 466
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 5 cut(s) 144, 231, 471, 569, 906
SatI GCNGC 5 cut(s) 237, 258, 297, 782, 785
Sau3AI GATC 5 cut(s) 178, 202, 225, 615, 621
Sau96I GGNCC 1 cut(s) 779
SchI GAGTC 3 cut(s) 251, 536, 552
ScrFI CCNGG 1 cut(s) 636
SduI GDGCHC 2 cut(s) 168, 320
SfaNI GCATC 4 cut(s) 184, 244, 403, 409
SfoI GGCGCC 1 cut(s) 801
SfuI TTCGAA 1 cut(s) 715
SmlI CTYRAG 3 cut(s) 461, 536, 729
SmoI CTYRAG 3 cut(s) 461, 536, 729
Sse9I AATT 3 cut(s) 265, 774, 910
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 2 cut(s) 197, 782
SspDI GGCGCC 1 cut(s) 799
SspMI CTAG 2 cut(s) 408, 551
SstI GAGCTC 1 cut(s) 168
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 634
TaaI ACNGT 1 cut(s) 824
TaiI ACGT 1 cut(s) 333
TaqI TCGA 5 cut(s) 177, 273, 618, 715, 743
TasI AATT 3 cut(s) 265, 774, 910
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 784
Tru1I TTAA 5 cut(s) 144, 231, 471, 569, 906
Tru9I TTAA 5 cut(s) 144, 231, 471, 569, 906
TscAI CASTG 2 cut(s) 252, 437
TseFI GTSAC 4 cut(s) 243, 428, 529, 824
TseI GCWGC 4 cut(s) 236, 257, 296, 784
Tsp45I GTSAC 4 cut(s) 243, 428, 529, 824
TspDTI ATGAA 4 cut(s) 36, 222, 605, 863
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 2 cut(s) 252, 437
VspI ATTAAT 1 cut(s) 906
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 2 cut(s) 408, 551
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.